Wall clock time and date at job start Wed Apr 1 2020 04:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00001 * 2 1 4 4 C 1.38751 * 120.05689 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94480 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05327 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.11258 * 359.95851 * 6 5 4 8 8 C 1.50701 * 119.97006 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.46646 * 204.99503 * 8 7 6 10 10 O 1.42899 * 109.47083 * 324.99581 * 8 7 6 11 11 C 1.42901 * 113.99912 * 270.00101 * 10 8 7 12 12 C 1.50693 * 109.47517 * 85.00074 * 8 7 6 13 13 O 1.21281 * 120.00095 * 244.99904 * 12 8 7 14 14 N 1.34780 * 120.00182 * 64.99565 * 12 8 7 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 8 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.50699 * 109.46939 * 205.00060 * 15 14 12 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00384 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99644 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00636 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46664 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47482 * 119.99851 * 21 19 17 24 24 H 1.48497 * 109.47236 * 240.00229 * 21 19 17 25 25 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 26 26 F 1.39905 * 109.47157 * 59.99740 * 25 15 14 27 27 F 1.39900 * 109.47010 * 300.00131 * 25 15 14 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 15 14 29 29 C 1.38166 * 120.05649 * 0.27141 * 7 6 5 30 30 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47138 * 300.00183 * 1 2 3 32 32 H 1.09000 * 109.46440 * 60.00159 * 1 2 3 33 33 H 1.08003 * 120.02823 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97313 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.93968 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47289 * 60.00153 * 11 10 8 37 37 H 1.09002 * 109.46712 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.47252 * 300.00029 * 11 10 8 39 39 H 0.96994 * 120.00115 * 0.02562 * 14 12 8 40 40 H 0.97006 * 120.00331 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.03182 * 179.74016 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0007 8 6 5.5609 2.5981 -0.0007 9 1 5.9738 1.6872 -0.4343 10 8 5.9772 3.7251 -0.7744 11 6 6.1868 3.4350 -2.1578 12 6 6.0559 2.7498 1.4145 13 8 6.6226 3.7672 1.7529 14 7 5.8687 1.7548 2.3042 15 6 6.3494 1.9026 3.6802 16 1 7.2803 2.4695 3.6809 17 6 6.5906 0.5400 4.2770 18 1 6.4041 -0.3473 3.6902 19 6 7.0495 0.4260 5.5721 20 7 7.2771 1.5064 6.2865 21 14 7.3493 -1.2630 6.3117 22 1 7.0198 -2.3078 5.3092 23 1 8.7762 -1.3854 6.7042 24 1 6.4895 -1.4385 7.5097 25 6 5.2999 2.6444 4.5103 26 9 4.1050 1.9166 4.5093 27 9 5.0759 3.9093 3.9562 28 9 5.7587 2.7849 5.8244 29 6 3.4312 1.2848 -0.0050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 0.2129 2.3203 -0.0005 34 1 1.3341 4.5114 -0.0011 35 1 3.7923 4.6379 -0.0024 36 1 5.2589 3.0686 -2.5969 37 1 6.5003 4.3415 -2.6757 38 1 6.9607 2.6738 -2.2562 39 1 5.4157 0.9410 2.0335 40 1 7.5996 1.4263 7.1979 41 1 4.0207 0.3798 -0.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:49 Heat of formation + Delta-G solvation = -241.967514 kcal Electronic energy + Delta-G solvation = -32410.961401 eV Core-core repulsion = 27455.806441 eV Total energy + Delta-G solvation = -4955.154959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.43266 -48.06826 -47.74307 -41.55177 -40.61154 -38.96186 -37.87714 -36.48069 -34.55388 -33.06699 -31.41361 -30.45440 -28.67134 -28.06669 -26.73522 -26.44503 -23.80322 -23.51323 -22.53594 -21.48149 -19.60883 -19.03343 -18.90038 -18.62995 -18.47654 -17.94221 -17.34858 -17.08434 -16.85242 -16.64822 -16.58229 -16.51297 -16.06462 -15.44192 -15.10485 -14.97044 -14.80211 -14.69138 -14.49482 -14.45092 -14.31468 -14.22749 -14.04807 -13.91704 -13.68725 -13.43053 -13.08136 -12.85137 -12.76019 -12.68536 -12.64202 -12.29019 -12.18647 -12.01981 -11.84920 -11.56661 -11.18015 -10.70420 -10.69066 -10.12305 -9.87614 -9.18747 -8.21725 -6.52724 0.17586 0.44777 1.45580 1.47321 1.52451 1.60596 1.85134 2.34926 2.37797 2.51291 2.67084 2.93422 3.08535 3.51700 3.67534 3.80195 3.80509 3.87485 3.96543 4.13582 4.18485 4.31859 4.34037 4.43098 4.50754 4.54645 4.56618 4.60889 4.76564 4.85700 4.87741 4.96883 5.25566 5.34233 5.40795 5.50668 5.51995 5.63750 5.70490 6.03952 6.44382 6.51581 6.64484 7.14753 7.27088 8.71535 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004358 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.161331 B = 6424.005066 C = 7404.857580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.142 4.142 7 C -0.083 4.083 8 C 0.128 3.872 9 H 0.127 0.873 10 O -0.378 6.378 11 C 0.021 3.979 12 C 0.508 3.492 13 O -0.559 6.559 14 N -0.698 5.698 15 C 0.253 3.747 16 H 0.049 0.951 17 C -0.559 4.559 18 H 0.094 0.906 19 C 0.015 3.985 20 N -0.875 5.875 21 Si 0.984 3.016 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.282 1.282 25 C 0.414 3.586 26 F -0.203 7.203 27 F -0.220 7.220 28 F -0.150 7.150 29 C -0.148 4.148 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.117 0.883 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.269 0.731 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -3.489 -16.159 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.073 3.927 4 C -0.219 4.219 5 C -0.101 4.101 6 C -0.160 4.160 7 C -0.084 4.084 8 C 0.066 3.934 9 H 0.144 0.856 10 O -0.296 6.296 11 C -0.074 4.074 12 C 0.294 3.706 13 O -0.437 6.437 14 N -0.350 5.350 15 C 0.146 3.854 16 H 0.067 0.933 17 C -0.596 4.596 18 H 0.112 0.888 19 C -0.190 4.190 20 N -0.509 5.509 21 Si 0.807 3.193 22 H -0.177 1.177 23 H -0.202 1.202 24 H -0.207 1.207 25 C 0.358 3.642 26 F -0.185 7.185 27 F -0.202 7.202 28 F -0.131 7.131 29 C -0.167 4.167 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.283 -2.669 -15.658 19.483 hybrid contribution -0.329 -0.464 0.763 0.952 sum -11.612 -3.133 -14.896 19.145 Atomic orbital electron populations 1.23360 0.76423 1.05635 1.02254 1.86056 1.23477 1.26399 1.88616 1.19019 0.92175 0.85005 0.96453 1.21577 1.01396 0.91755 1.07134 1.21212 0.93794 0.98399 0.96744 1.21009 0.94574 0.98214 1.02217 1.19745 0.93856 0.93691 1.01126 1.20609 0.91109 0.92616 0.89020 0.85574 1.88025 1.87914 1.32070 1.21590 1.23142 1.00992 1.03479 0.79813 1.20917 0.78806 0.83033 0.87847 1.90691 1.43012 1.29830 1.80127 1.45807 1.59547 1.19702 1.09927 1.19365 0.89906 0.98030 0.78098 0.93345 1.21241 1.48279 0.90393 0.99683 0.88816 1.26013 0.94090 1.01892 0.97038 1.70542 1.40217 1.29656 1.10495 0.85100 0.77784 0.78121 0.78267 1.17724 1.20220 1.20748 1.23307 0.82853 0.76262 0.81820 1.92988 1.50631 1.78059 1.96817 1.93065 1.95610 1.45510 1.86026 1.93375 1.87343 1.95408 1.37013 1.20354 0.92434 0.97715 1.06150 0.86309 0.92211 0.91129 0.82741 0.83339 0.86512 0.92530 0.87797 0.92312 0.75124 0.92143 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.42 10.50 -92.40 -0.97 -8.39 16 3 C 0.12 2.92 6.69 22.51 0.15 3.07 16 4 C -0.20 -4.36 9.04 22.37 0.20 -4.16 16 5 C -0.08 -1.98 10.04 22.26 0.22 -1.76 16 6 C -0.14 -4.12 9.35 22.28 0.21 -3.91 16 7 C -0.08 -2.40 4.91 -19.88 -0.10 -2.49 16 8 C 0.13 3.93 2.73 29.10 0.08 4.01 16 9 H 0.13 2.96 7.69 -2.38 -0.02 2.95 16 10 O -0.38 -11.79 9.03 -129.99 -1.17 -12.96 16 11 C 0.02 0.43 10.81 113.37 1.23 1.65 16 12 C 0.51 21.15 6.70 87.65 0.59 21.74 16 13 O -0.56 -28.59 15.08 15.96 0.24 -28.35 16 14 N -0.70 -29.32 4.94 -446.10 -2.20 -31.52 16 15 C 0.25 12.99 2.21 44.24 0.10 13.09 16 16 H 0.05 2.86 7.58 -2.39 -0.02 2.84 16 17 C -0.56 -28.45 8.46 25.60 0.22 -28.23 16 18 H 0.09 4.37 7.74 -2.91 -0.02 4.35 16 19 C 0.01 0.77 5.20 84.65 0.44 1.21 16 20 N -0.88 -48.95 9.51 21.45 0.20 -48.75 16 21 Si 0.98 40.60 29.54 68.60 2.03 42.62 16 22 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.41 22.14 2.81 71.98 0.20 22.34 16 26 F -0.20 -10.32 16.94 44.97 0.76 -9.56 16 27 F -0.22 -11.90 15.68 44.97 0.71 -11.19 16 28 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 29 C -0.15 -3.83 9.47 22.37 0.21 -3.62 16 30 H 0.12 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 32 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 33 H 0.16 2.38 6.30 -2.91 -0.02 2.36 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.12 3.67 7.62 -2.91 -0.02 3.65 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 39 H 0.41 14.76 8.39 -92.71 -0.78 13.98 16 40 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 41 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.07 361.24 5.34 -66.73 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.31 Total: 25.15 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 4.86 Total: 24.30 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.00 Total: -80.27 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.90 Total: -49.70 kcal Atomic # 9 Polarization: -30.88 SS G_CDS: 2.05 Total: -28.83 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -72.07 5.34 -66.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.237 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds