Wall clock time and date at job start Wed Apr 1 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00146 * 2 1 4 4 C 1.38760 * 120.05183 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94012 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05769 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11039 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97168 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47412 * 90.00115 * 8 7 6 10 10 H 1.09002 * 109.47296 * 305.00382 * 9 8 7 11 11 O 1.42907 * 109.46898 * 64.99785 * 9 8 7 12 12 C 1.50695 * 109.47693 * 184.99953 * 9 8 7 13 13 O 1.21281 * 120.00297 * 245.00219 * 12 9 8 14 14 N 1.34777 * 119.99674 * 64.99782 * 12 9 8 15 15 C 1.46504 * 120.00073 * 180.02562 * 14 12 9 16 16 H 1.09003 * 109.46667 * 325.00157 * 15 14 12 17 17 C 1.50697 * 109.47403 * 205.00526 * 15 14 12 18 18 H 1.08003 * 119.99570 * 274.94233 * 17 15 14 19 19 C 1.37871 * 120.00352 * 94.93841 * 17 15 14 20 20 N 1.31515 * 119.99949 * 184.87687 * 19 17 15 21 21 Si 1.86797 * 120.00096 * 4.87987 * 19 17 15 22 22 H 1.48499 * 109.47102 * 84.80911 * 21 19 17 23 23 H 1.48501 * 109.47275 * 204.80985 * 21 19 17 24 24 H 1.48498 * 109.47132 * 324.81132 * 21 19 17 25 25 C 1.53003 * 109.46971 * 84.99955 * 15 14 12 26 26 F 1.39896 * 109.47185 * 54.94185 * 25 15 14 27 27 F 1.39899 * 109.46740 * 174.93854 * 25 15 14 28 28 F 1.39900 * 109.47172 * 294.93692 * 25 15 14 29 29 C 1.38167 * 120.05772 * 0.23852 * 7 6 5 30 30 H 1.08995 * 109.47063 * 299.99637 * 1 2 3 31 31 H 1.09003 * 109.46998 * 59.99830 * 1 2 3 32 32 H 1.09007 * 109.47426 * 179.97438 * 1 2 3 33 33 H 1.07992 * 120.03038 * 0.04238 * 4 3 2 34 34 H 1.07998 * 119.97010 * 179.97438 * 5 4 3 35 35 H 1.07993 * 119.94784 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.47155 * 329.99794 * 8 7 6 37 37 H 1.09001 * 109.47544 * 210.00575 * 8 7 6 38 38 H 0.96705 * 113.99603 * 60.00656 * 11 9 8 39 39 H 0.97001 * 120.00579 * 0.02562 * 14 12 9 40 40 H 0.97002 * 120.00199 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.03003 * 179.74146 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0021 8 6 5.5607 2.5981 -0.0045 9 6 6.0722 2.6263 1.4372 10 1 5.5938 3.4438 1.9766 11 8 5.7614 1.3870 2.0772 12 6 7.5653 2.8307 1.4366 13 8 8.2971 1.9576 1.8527 14 7 8.0873 3.9838 0.9737 15 6 9.5389 4.1824 0.9727 16 1 9.9725 3.6973 1.8472 17 6 9.8441 5.6576 1.0136 18 1 9.8703 6.2291 0.0975 19 6 10.0900 6.2775 2.2202 20 7 10.2614 7.5806 2.2671 21 14 10.1796 5.2667 3.7885 22 1 11.5512 4.7201 3.9474 23 1 9.8524 6.1288 4.9525 24 1 9.2066 4.1475 3.7124 25 6 10.1361 3.5729 -0.2973 26 9 9.4973 4.1129 -1.4187 27 9 11.5035 3.8626 -0.3550 28 9 9.9535 2.1860 -0.2794 29 6 3.4311 1.2848 -0.0061 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2128 2.3204 0.0016 34 1 1.3339 4.5114 0.0000 35 1 3.7922 4.6380 -0.0024 36 1 5.8749 3.5062 -0.5193 37 1 5.9707 1.7288 -0.5186 38 1 6.1551 0.6140 1.6498 39 1 7.5021 4.6823 0.6412 40 1 10.4340 8.0169 3.1161 41 1 4.0206 0.3799 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:56 Heat of formation + Delta-G solvation = -263.538245 kcal Electronic energy + Delta-G solvation = -31223.803713 eV Core-core repulsion = 26267.713376 eV Total energy + Delta-G solvation = -4956.090336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.11916 -46.64702 -46.59462 -40.39500 -39.55523 -37.86525 -36.34199 -34.80251 -32.97818 -32.44331 -30.78579 -29.83871 -28.16417 -27.45392 -25.02515 -24.51234 -22.68477 -21.51377 -21.11180 -20.10094 -18.57029 -17.98015 -17.61406 -17.25182 -16.74865 -16.53798 -16.49667 -16.21010 -16.01459 -15.88399 -15.50435 -14.85671 -14.36064 -14.07296 -13.97273 -13.59937 -13.55841 -13.50653 -13.20713 -13.16400 -13.06667 -12.81827 -12.80675 -12.73946 -12.61570 -12.23117 -11.98653 -11.84885 -11.66467 -11.58419 -11.30925 -11.19648 -10.98530 -10.79514 -10.61546 -10.18802 -9.87934 -9.33843 -9.02756 -8.82883 -8.51989 -8.32048 -6.58436 -4.73931 1.16958 1.33626 2.94327 3.06034 3.07980 3.17911 3.26708 3.51522 3.64954 3.87429 4.05927 4.34483 4.58833 4.64043 4.79068 4.81814 4.85185 4.87783 4.94259 4.97903 5.11215 5.12987 5.16748 5.20808 5.25094 5.35756 5.41144 5.55150 5.64019 5.83256 5.93249 6.15210 6.22841 6.29981 6.49197 6.61670 6.83058 7.02970 7.22336 7.59981 7.79466 8.19574 8.46317 8.69304 8.97385 10.49816 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002998 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.673112 B = 9337.889595 C = 9781.712992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.152 4.152 7 C -0.033 4.033 8 C -0.111 4.111 9 C 0.098 3.902 10 H 0.123 0.877 11 O -0.535 6.535 12 C 0.471 3.529 13 O -0.535 6.535 14 N -0.708 5.708 15 C 0.202 3.798 16 H 0.090 0.910 17 C -0.538 4.538 18 H 0.094 0.906 19 C 0.101 3.899 20 N -0.858 5.858 21 Si 0.866 3.134 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.254 1.254 25 C 0.438 3.562 26 F -0.192 7.192 27 F -0.181 7.181 28 F -0.197 7.197 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.380 0.620 39 H 0.401 0.599 40 H 0.276 0.724 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.136 -8.706 -4.810 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.170 4.170 7 C -0.033 4.033 8 C -0.149 4.149 9 C 0.035 3.965 10 H 0.141 0.859 11 O -0.339 6.339 12 C 0.256 3.744 13 O -0.412 6.412 14 N -0.361 5.361 15 C 0.099 3.901 16 H 0.107 0.893 17 C -0.576 4.576 18 H 0.112 0.888 19 C -0.110 4.110 20 N -0.490 5.490 21 Si 0.691 3.309 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.178 1.178 25 C 0.382 3.618 26 F -0.174 7.174 27 F -0.162 7.162 28 F -0.178 7.178 29 C -0.153 4.153 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.805 -8.980 -4.014 19.472 hybrid contribution -0.076 -0.263 0.078 0.285 sum -16.881 -9.244 -3.936 19.645 Atomic orbital electron populations 1.23028 0.78600 1.03791 1.01252 1.86072 1.21207 1.27092 1.88844 1.18991 0.92295 0.84064 0.96707 1.21195 0.99808 0.92523 1.09731 1.20894 0.94565 0.96906 0.97437 1.21032 0.93795 0.98210 1.03980 1.19436 0.94767 0.92354 0.96738 1.21316 0.91664 1.05148 0.96767 1.21871 0.91627 0.89545 0.93448 0.85937 1.86585 1.74979 1.15256 1.57110 1.21688 0.91295 0.83192 0.78218 1.90689 1.61366 1.42763 1.46421 1.47486 1.08955 1.16987 1.62666 1.20023 0.80473 0.99084 0.90563 0.89257 1.20715 1.51063 0.89037 0.96748 0.88800 1.24990 0.92072 0.94851 0.99058 1.69851 1.42945 1.08595 1.27645 0.86955 0.80502 0.80988 0.82434 1.19000 1.20422 1.17800 1.21711 0.76754 0.75295 0.88019 1.93066 1.81965 1.86015 1.56335 1.93111 1.33078 1.93269 1.96791 1.93139 1.95094 1.32669 1.96915 1.20257 0.91152 0.98233 1.05632 0.92706 0.92777 0.88367 0.85786 0.85782 0.85449 0.88663 0.89669 0.77201 0.76272 0.91371 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.48 10.50 -19.43 -0.20 -3.68 16 3 C 0.12 1.44 6.69 -39.21 -0.26 1.18 16 4 C -0.21 -2.15 9.04 -39.43 -0.36 -2.50 16 5 C -0.08 -0.79 10.04 -39.60 -0.40 -1.18 16 6 C -0.15 -1.63 9.70 -39.56 -0.38 -2.01 16 7 C -0.03 -0.38 4.96 -104.65 -0.52 -0.90 16 8 C -0.11 -1.30 5.00 -27.89 -0.14 -1.44 16 9 C 0.10 1.39 3.37 -27.89 -0.09 1.30 16 10 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 11 O -0.53 -7.91 12.50 -55.09 -0.69 -8.60 16 12 C 0.47 8.64 6.82 -10.99 -0.07 8.57 16 13 O -0.54 -11.70 14.90 -14.30 -0.21 -11.92 16 14 N -0.71 -13.37 4.81 -54.93 -0.26 -13.63 16 15 C 0.20 4.51 1.71 -69.08 -0.12 4.39 16 16 H 0.09 2.15 4.73 -51.93 -0.25 1.91 16 17 C -0.54 -13.34 8.52 -34.44 -0.29 -13.64 16 18 H 0.09 2.51 8.00 -52.48 -0.42 2.09 16 19 C 0.10 2.58 5.47 -17.82 -0.10 2.48 16 20 N -0.86 -23.11 13.96 55.43 0.77 -22.34 16 21 Si 0.87 19.94 26.99 -169.99 -4.59 15.35 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.25 -5.96 6.82 56.52 0.39 -5.58 16 25 C 0.44 9.46 2.83 37.16 0.11 9.57 16 26 F -0.19 -3.94 16.93 2.25 0.04 -3.90 16 27 F -0.18 -4.04 16.89 2.25 0.04 -4.01 16 28 F -0.20 -4.19 15.83 2.25 0.04 -4.15 16 29 C -0.13 -1.61 9.35 -39.43 -0.37 -1.98 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.12 0.96 6.30 -52.49 -0.33 0.62 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.09 1.03 7.71 -51.92 -0.40 0.63 16 37 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.38 4.78 8.79 45.56 0.40 5.18 16 39 H 0.40 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -30.91 363.65 -5.42 -36.32 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -3.82 Total: 10.07 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.01 Total: 5.01 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.51 Total: -35.97 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.11 Total: -24.20 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 0.11 Total: -12.06 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.59 Total: 15.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.91 -5.42 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.217 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds