Wall clock time and date at job start Wed Apr 1 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00146 * 2 1 4 4 C 1.38760 * 120.05183 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94012 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05769 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11039 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97168 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47412 * 90.00115 * 8 7 6 10 10 H 1.09002 * 109.47296 * 305.00382 * 9 8 7 11 11 O 1.42907 * 109.46898 * 64.99785 * 9 8 7 12 12 C 1.50695 * 109.47693 * 184.99953 * 9 8 7 13 13 O 1.21281 * 120.00297 * 245.00219 * 12 9 8 14 14 N 1.34777 * 119.99674 * 64.99782 * 12 9 8 15 15 C 1.46504 * 120.00073 * 180.02562 * 14 12 9 16 16 H 1.09003 * 109.46667 * 325.00157 * 15 14 12 17 17 C 1.50697 * 109.47403 * 205.00526 * 15 14 12 18 18 H 1.08003 * 119.99570 * 274.94233 * 17 15 14 19 19 C 1.37871 * 120.00352 * 94.93841 * 17 15 14 20 20 N 1.31515 * 119.99949 * 184.87687 * 19 17 15 21 21 Si 1.86797 * 120.00096 * 4.87987 * 19 17 15 22 22 H 1.48499 * 109.47102 * 84.80911 * 21 19 17 23 23 H 1.48501 * 109.47275 * 204.80985 * 21 19 17 24 24 H 1.48498 * 109.47132 * 324.81132 * 21 19 17 25 25 C 1.53003 * 109.46971 * 84.99955 * 15 14 12 26 26 F 1.39896 * 109.47185 * 54.94185 * 25 15 14 27 27 F 1.39899 * 109.46740 * 174.93854 * 25 15 14 28 28 F 1.39900 * 109.47172 * 294.93692 * 25 15 14 29 29 C 1.38167 * 120.05772 * 0.23852 * 7 6 5 30 30 H 1.08995 * 109.47063 * 299.99637 * 1 2 3 31 31 H 1.09003 * 109.46998 * 59.99830 * 1 2 3 32 32 H 1.09007 * 109.47426 * 179.97438 * 1 2 3 33 33 H 1.07992 * 120.03038 * 0.04238 * 4 3 2 34 34 H 1.07998 * 119.97010 * 179.97438 * 5 4 3 35 35 H 1.07993 * 119.94784 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.47155 * 329.99794 * 8 7 6 37 37 H 1.09001 * 109.47544 * 210.00575 * 8 7 6 38 38 H 0.96705 * 113.99603 * 60.00656 * 11 9 8 39 39 H 0.97001 * 120.00579 * 0.02562 * 14 12 9 40 40 H 0.97002 * 120.00199 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.03003 * 179.74146 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0021 8 6 5.5607 2.5981 -0.0045 9 6 6.0722 2.6263 1.4372 10 1 5.5938 3.4438 1.9766 11 8 5.7614 1.3870 2.0772 12 6 7.5653 2.8307 1.4366 13 8 8.2971 1.9576 1.8527 14 7 8.0873 3.9838 0.9737 15 6 9.5389 4.1824 0.9727 16 1 9.9725 3.6973 1.8472 17 6 9.8441 5.6576 1.0136 18 1 9.8703 6.2291 0.0975 19 6 10.0900 6.2775 2.2202 20 7 10.2614 7.5806 2.2671 21 14 10.1796 5.2667 3.7885 22 1 11.5512 4.7201 3.9474 23 1 9.8524 6.1288 4.9525 24 1 9.2066 4.1475 3.7124 25 6 10.1361 3.5729 -0.2973 26 9 9.4973 4.1129 -1.4187 27 9 11.5035 3.8626 -0.3550 28 9 9.9535 2.1860 -0.2794 29 6 3.4311 1.2848 -0.0061 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2128 2.3204 0.0016 34 1 1.3339 4.5114 0.0000 35 1 3.7922 4.6380 -0.0024 36 1 5.8749 3.5062 -0.5193 37 1 5.9707 1.7288 -0.5186 38 1 6.1551 0.6140 1.6498 39 1 7.5021 4.6823 0.6412 40 1 10.4340 8.0169 3.1161 41 1 4.0206 0.3799 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928806688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:55 Heat of formation + Delta-G solvation = -284.479739 kcal Electronic energy + Delta-G solvation = -31224.711804 eV Core-core repulsion = 26267.713376 eV Total energy + Delta-G solvation = -4956.998428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.87455 -48.38493 -48.36160 -41.33443 -40.80206 -38.76893 -37.53102 -36.48355 -34.60944 -33.63853 -31.71872 -31.18331 -29.32244 -28.07887 -26.90179 -25.62927 -23.46508 -23.18283 -21.98482 -21.59746 -20.22796 -19.36026 -19.07860 -18.62413 -18.46347 -18.24347 -17.58591 -17.14783 -16.90544 -16.85041 -16.58338 -16.26617 -15.77108 -15.30396 -15.28533 -15.19600 -14.93624 -14.84659 -14.81829 -14.56711 -14.51832 -14.50449 -14.47345 -14.10257 -13.70474 -13.52182 -13.09415 -12.98240 -12.87649 -12.66992 -12.58798 -12.41941 -12.07256 -12.01270 -11.85427 -11.73157 -11.71433 -11.05189 -10.64862 -10.17072 -9.72017 -9.10456 -8.56016 -6.73560 0.36168 0.54286 1.24541 1.31995 1.40798 1.47811 1.95244 2.14136 2.15793 2.40662 2.81205 2.91539 3.21710 3.31634 3.34222 3.47197 3.77462 3.89470 3.91106 4.01969 4.03394 4.23371 4.33088 4.40574 4.41331 4.47239 4.54098 4.60849 4.74002 4.80785 4.90387 4.94621 5.13949 5.38182 5.40460 5.53530 5.68363 5.86463 5.86724 6.43515 6.48499 6.50287 6.70938 6.99460 7.21236 8.56266 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002998 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.673112 B = 9337.889595 C = 9781.712992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.042 4.042 8 C -0.102 4.102 9 C 0.112 3.888 10 H 0.136 0.864 11 O -0.544 6.544 12 C 0.471 3.529 13 O -0.570 6.570 14 N -0.703 5.703 15 C 0.208 3.792 16 H 0.075 0.925 17 C -0.536 4.536 18 H 0.070 0.930 19 C 0.066 3.934 20 N -0.895 5.895 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.261 1.261 25 C 0.440 3.560 26 F -0.184 7.184 27 F -0.186 7.186 28 F -0.193 7.193 29 C -0.153 4.153 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.388 0.612 39 H 0.415 0.585 40 H 0.280 0.720 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.171 -9.001 -4.809 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.179 4.179 7 C -0.042 4.042 8 C -0.139 4.139 9 C 0.049 3.951 10 H 0.154 0.846 11 O -0.350 6.350 12 C 0.258 3.742 13 O -0.450 6.450 14 N -0.357 5.357 15 C 0.103 3.897 16 H 0.093 0.907 17 C -0.574 4.574 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.186 1.186 25 C 0.384 3.616 26 F -0.166 7.166 27 F -0.168 7.168 28 F -0.175 7.175 29 C -0.172 4.172 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.238 0.762 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.870 -9.275 -4.026 21.408 hybrid contribution 0.471 -0.249 0.002 0.532 sum -18.399 -9.524 -4.024 21.105 Atomic orbital electron populations 1.23311 0.76587 1.05390 1.02193 1.86042 1.23396 1.27129 1.88856 1.19189 0.92444 0.84879 0.97046 1.21503 1.01029 0.92086 1.08689 1.21244 0.94533 0.97847 0.96399 1.21298 0.94419 0.98471 1.03714 1.19400 0.94403 0.92668 0.97712 1.21223 0.92058 1.05762 0.94894 1.21843 0.88134 0.89786 0.95333 0.84625 1.86567 1.74874 1.15770 1.57763 1.22421 0.93052 0.82023 0.76719 1.90673 1.62741 1.43783 1.47784 1.47063 1.07635 1.18006 1.63004 1.19731 0.82160 0.97381 0.90434 0.90724 1.20654 1.51026 0.89944 0.95729 0.91223 1.25486 0.92005 0.95372 1.01206 1.69912 1.44823 1.09753 1.28510 0.86197 0.80058 0.79577 0.80217 1.19080 1.19460 1.18559 1.21567 0.76506 0.75432 0.88057 1.93080 1.81758 1.85920 1.55829 1.93101 1.33549 1.93328 1.96825 1.93147 1.95052 1.32340 1.96914 1.20388 0.91822 0.98409 1.06589 0.91871 0.91615 0.86616 0.83545 0.83288 0.84036 0.87609 0.89585 0.76242 0.74677 0.90979 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.05 10.50 -92.44 -0.97 -8.02 16 3 C 0.11 2.39 6.69 22.51 0.15 2.54 16 4 C -0.21 -3.81 9.04 22.37 0.20 -3.61 16 5 C -0.08 -1.40 10.04 22.26 0.22 -1.17 16 6 C -0.16 -3.06 9.70 22.28 0.22 -2.85 16 7 C -0.04 -0.90 4.96 -19.88 -0.10 -1.00 16 8 C -0.10 -2.20 5.00 29.85 0.15 -2.05 16 9 C 0.11 2.98 3.37 29.84 0.10 3.08 16 10 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 11 O -0.54 -15.41 12.50 -129.99 -1.62 -17.03 16 12 C 0.47 16.68 6.82 87.66 0.60 17.28 16 13 O -0.57 -24.50 14.90 15.96 0.24 -24.26 16 14 N -0.70 -25.75 4.81 -446.09 -2.14 -27.89 16 15 C 0.21 9.17 1.71 44.24 0.08 9.25 16 16 H 0.08 3.56 4.73 -2.39 -0.01 3.55 16 17 C -0.54 -26.56 8.52 25.60 0.22 -26.34 16 18 H 0.07 3.77 8.00 -2.91 -0.02 3.74 16 19 C 0.07 3.38 5.47 84.65 0.46 3.84 16 20 N -0.90 -48.39 13.96 21.45 0.30 -48.09 16 21 Si 0.92 40.90 26.99 68.60 1.85 42.75 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.26 -11.89 6.82 99.48 0.68 -11.21 16 25 C 0.44 18.71 2.83 71.98 0.20 18.92 16 26 F -0.18 -7.37 16.93 44.97 0.76 -6.61 16 27 F -0.19 -8.26 16.89 44.97 0.76 -7.50 16 28 F -0.19 -8.05 15.83 44.97 0.71 -7.34 16 29 C -0.15 -3.54 9.35 22.37 0.21 -3.33 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.59 16 31 H 0.07 0.58 7.66 -2.39 -0.02 0.57 16 32 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.11 2.06 7.71 -2.38 -0.02 2.04 16 37 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 38 H 0.39 9.47 8.79 -74.05 -0.65 8.82 16 39 H 0.42 13.04 8.30 -92.71 -0.77 12.27 16 40 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -65.33 363.65 3.37 -61.96 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.33 Total: 26.16 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 3.82 Total: 15.89 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.85 Total: -75.99 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -2.36 Total: -49.31 kcal Atomic # 9 Polarization: -23.68 SS G_CDS: 2.23 Total: -21.45 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.85 Total: 42.75 kcal Total: -65.33 3.37 -61.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.525 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds