Wall clock time and date at job start Wed Apr 1 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99878 * 2 1 4 4 C 1.53000 * 109.46589 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47632 * 65.00020 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46811 * 34.99484 * 13 12 10 15 15 C 1.50695 * 109.47248 * 155.00091 * 13 12 10 16 16 H 1.08003 * 119.99760 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00158 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00059 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 120.00269 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46988 * 89.99695 * 19 17 15 21 21 H 1.48499 * 109.47031 * 209.99894 * 19 17 15 22 22 H 1.48495 * 109.47015 * 329.99741 * 19 17 15 23 23 C 1.52997 * 109.46852 * 274.99883 * 13 12 10 24 24 F 1.39899 * 109.47395 * 59.99869 * 23 13 12 25 25 F 1.39903 * 109.47063 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47463 * 299.99839 * 23 13 12 27 27 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 28 28 C 1.37709 * 119.90833 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47025 * 299.99823 * 1 2 3 31 31 H 1.09005 * 109.47163 * 59.99621 * 1 2 3 32 32 H 1.08997 * 109.46810 * 60.00284 * 3 2 1 33 33 H 1.09004 * 109.47107 * 300.00048 * 3 2 1 34 34 H 1.09007 * 109.46974 * 304.99412 * 4 3 2 35 35 H 1.09005 * 109.46584 * 185.00457 * 4 3 2 36 36 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 38 38 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 39 39 H 0.97000 * 120.00302 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.04691 * 180.02562 * 27 9 8 41 41 H 1.07999 * 119.95155 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3001 0.3989 -1.3838 7 6 6.1793 0.7917 -0.3814 8 6 7.5352 0.6149 -0.5440 9 6 8.0261 0.0290 -1.7138 10 6 9.4782 -0.1684 -1.8895 11 8 10.2490 0.1784 -1.0155 12 7 9.9498 -0.7332 -3.0187 13 6 11.3912 -0.9297 -3.1928 14 1 11.8440 -1.1689 -2.2306 15 6 11.6308 -2.0630 -4.1566 16 1 10.7932 -2.5850 -4.5953 17 6 12.9192 -2.4342 -4.4777 18 7 13.9391 -1.7989 -3.9431 19 14 13.2163 -3.8396 -5.6719 20 1 13.2900 -3.3060 -7.0557 21 1 14.4946 -4.5152 -5.3331 22 1 12.1005 -4.8147 -5.5762 23 6 12.0173 0.3518 -3.7466 24 9 11.7948 1.4040 -2.8519 25 9 13.3936 0.1640 -3.9134 26 9 11.4360 0.6590 -4.9815 27 6 7.1386 -0.3697 -2.7168 28 6 5.7844 -0.1845 -2.5487 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9785 2.1765 0.0890 36 1 5.7988 1.2403 0.5244 37 1 8.2180 0.9243 0.2334 38 1 9.3348 -1.0102 -3.7158 39 1 14.8456 -2.0597 -4.1692 40 1 7.5141 -0.8232 -3.6222 41 1 5.0978 -0.4928 -3.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928810009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:35 Heat of formation + Delta-G solvation = -226.735969 kcal Electronic energy + Delta-G solvation = -30356.672591 eV Core-core repulsion = 25402.178121 eV Total energy + Delta-G solvation = -4954.494470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.33335 -45.98753 -45.59766 -40.41910 -39.16111 -38.16842 -36.86857 -34.69586 -32.66092 -31.61305 -30.96380 -29.87602 -28.02161 -26.78249 -24.58873 -24.11272 -23.35259 -21.94023 -21.35111 -19.88066 -18.64028 -17.93387 -17.25265 -16.86889 -16.76379 -16.58982 -16.33010 -16.03147 -15.57461 -15.51367 -15.28654 -14.90860 -14.51530 -14.43761 -13.99799 -13.56869 -13.45806 -13.15553 -12.95383 -12.88679 -12.60133 -12.52879 -12.39242 -12.29953 -12.23310 -12.04973 -11.94898 -11.80772 -11.68241 -11.17703 -11.09189 -10.90065 -10.86533 -10.75857 -10.40457 -10.16255 -9.65787 -9.32031 -9.10213 -8.72912 -8.37902 -8.14853 -6.23409 -4.47548 1.02534 1.32774 2.87688 3.18291 3.20731 3.25688 3.27619 3.28134 3.80021 4.07010 4.22032 4.40980 4.59010 4.63025 4.71183 4.74095 4.83154 4.88734 4.93564 4.94340 4.96999 5.13279 5.18392 5.26767 5.29203 5.39031 5.54671 5.84135 5.88487 5.96539 6.15623 6.21389 6.26666 6.44100 6.58193 6.66504 6.94934 7.15873 7.22659 7.47183 7.63067 8.31270 8.49827 8.86896 9.20277 10.68215 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.002246 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.122071 B =12464.423201 C =13211.841421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.059 3.941 5 O -0.305 6.305 6 C 0.147 3.853 7 C -0.221 4.221 8 C -0.020 4.020 9 C -0.161 4.161 10 C 0.551 3.449 11 O -0.536 6.536 12 N -0.707 5.707 13 C 0.245 3.755 14 H 0.087 0.913 15 C -0.552 4.552 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.417 3.583 24 F -0.217 7.217 25 F -0.137 7.137 26 F -0.209 7.209 27 C -0.045 4.045 28 C -0.159 4.159 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.397 0.603 39 H 0.268 0.732 40 H 0.136 0.864 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.075 5.126 5.818 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.017 4.017 5 O -0.218 6.218 6 C 0.101 3.899 7 C -0.239 4.239 8 C -0.039 4.039 9 C -0.165 4.165 10 C 0.338 3.662 11 O -0.414 6.414 12 N -0.356 5.356 13 C 0.139 3.861 14 H 0.104 0.896 15 C -0.589 4.589 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.361 3.639 24 F -0.199 7.199 25 F -0.118 7.118 26 F -0.191 7.191 27 C -0.064 4.064 28 C -0.177 4.177 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.154 0.846 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.306 5.187 6.316 22.820 hybrid contribution -0.091 -0.145 -0.892 0.909 sum -21.398 5.042 5.423 22.643 Atomic orbital electron populations 1.22768 0.80767 1.03077 0.99960 1.87982 1.19869 1.27049 1.95411 1.22585 0.91536 0.85834 1.01473 1.22881 0.93695 0.98456 0.86639 1.86072 1.20206 1.76558 1.39010 1.19214 0.82152 0.94234 0.94283 1.21166 0.93859 1.08744 1.00156 1.21065 0.94369 0.92487 0.96015 1.20047 0.93668 1.05987 0.96776 1.18183 0.87457 0.77941 0.82641 1.90766 1.58336 1.50379 1.41924 1.46005 1.09437 1.61256 1.18939 1.19748 0.76610 0.89412 1.00309 0.89594 1.20867 0.93534 1.16145 1.28337 0.90419 1.25089 0.95685 0.97087 0.96577 1.70402 0.99284 1.36698 1.40865 0.86204 0.77979 0.81117 0.80498 1.20210 1.20806 1.19453 1.23120 0.79352 0.86543 0.74901 1.93070 1.94918 1.62873 1.69062 1.93406 1.29429 1.93855 1.95075 1.92987 1.85070 1.94338 1.46723 1.21212 0.92003 0.95280 0.97923 1.20315 0.95402 1.04799 0.97197 0.89409 0.94068 0.93885 0.91033 0.91991 0.90790 0.90153 0.85134 0.84316 0.76751 0.92105 0.84580 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.53 10.67 -40.08 -0.43 -3.95 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.06 0.46 5.12 37.16 0.19 0.65 16 5 O -0.31 -3.46 10.09 -23.66 -0.24 -3.70 16 6 C 0.15 1.81 6.70 -39.02 -0.26 1.54 16 7 C -0.22 -2.63 9.01 -39.49 -0.36 -2.98 16 8 C -0.02 -0.30 9.58 -39.22 -0.38 -0.67 16 9 C -0.16 -2.63 5.87 -104.96 -0.62 -3.24 16 10 C 0.55 11.30 7.30 -12.44 -0.09 11.21 16 11 O -0.54 -12.81 14.91 5.29 0.08 -12.73 16 12 N -0.71 -14.73 4.94 -55.96 -0.28 -15.01 16 13 C 0.24 6.13 2.21 -69.08 -0.15 5.97 16 14 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 15 C -0.55 -14.06 8.46 -34.45 -0.29 -14.35 16 16 H 0.08 1.86 7.74 -52.48 -0.41 1.45 16 17 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 18 N -0.84 -23.04 9.50 55.43 0.53 -22.51 16 19 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C 0.42 10.80 2.81 37.16 0.10 10.90 16 24 F -0.22 -5.60 15.67 2.25 0.04 -5.57 16 25 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 26 F -0.21 -5.20 16.94 2.25 0.04 -5.17 16 27 C -0.05 -0.62 9.53 -39.22 -0.37 -0.99 16 28 C -0.16 -1.96 9.97 -39.50 -0.39 -2.35 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 7.64 -51.93 -0.40 0.17 16 35 H 0.08 0.47 7.66 -51.93 -0.40 0.08 16 36 H 0.13 1.18 6.28 -52.48 -0.33 0.85 16 37 H 0.14 2.00 7.64 -52.49 -0.40 1.60 16 38 H 0.40 7.09 6.56 -40.82 -0.27 6.82 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.14 1.62 6.39 -52.48 -0.34 1.28 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -32.44 360.15 -5.79 -38.23 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.60 Total: 4.48 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.36 Total: 9.21 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.25 Total: -37.52 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.59 Total: -20.39 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.44 -5.79 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.502 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds