Wall clock time and date at job start Wed Apr 1 2020 04:30:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42907 * 113.99878 * 2 1
4 4 C 1.53000 * 109.46589 * 180.02562 * 3 2 1
5 5 O 1.42896 * 109.47632 * 65.00020 * 4 3 2
6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3
7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4
8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5
9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6
10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7
11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8
12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8
13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9
14 14 H 1.09000 * 109.46811 * 34.99484 * 13 12 10
15 15 C 1.50695 * 109.47248 * 155.00091 * 13 12 10
16 16 H 1.08003 * 119.99760 * 359.97438 * 15 13 12
17 17 C 1.37870 * 120.00158 * 180.02562 * 15 13 12
18 18 N 1.31518 * 120.00059 * 359.97438 * 17 15 13
19 19 Si 1.86806 * 120.00269 * 179.97438 * 17 15 13
20 20 H 1.48498 * 109.46988 * 89.99695 * 19 17 15
21 21 H 1.48499 * 109.47031 * 209.99894 * 19 17 15
22 22 H 1.48495 * 109.47015 * 329.99741 * 19 17 15
23 23 C 1.52997 * 109.46852 * 274.99883 * 13 12 10
24 24 F 1.39899 * 109.47395 * 59.99869 * 23 13 12
25 25 F 1.39903 * 109.47063 * 180.02562 * 23 13 12
26 26 F 1.39900 * 109.47463 * 299.99839 * 23 13 12
27 27 C 1.39733 * 119.82362 * 0.28485 * 9 8 7
28 28 C 1.37709 * 119.90833 * 359.97438 * 27 9 8
29 29 H 1.08997 * 109.47463 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47025 * 299.99823 * 1 2 3
31 31 H 1.09005 * 109.47163 * 59.99621 * 1 2 3
32 32 H 1.08997 * 109.46810 * 60.00284 * 3 2 1
33 33 H 1.09004 * 109.47107 * 300.00048 * 3 2 1
34 34 H 1.09007 * 109.46974 * 304.99412 * 4 3 2
35 35 H 1.09005 * 109.46584 * 185.00457 * 4 3 2
36 36 H 1.08004 * 119.95747 * 359.97438 * 7 6 5
37 37 H 1.08002 * 120.04909 * 179.72495 * 8 7 6
38 38 H 0.97004 * 119.99698 * 359.97438 * 12 10 9
39 39 H 0.97000 * 120.00302 * 180.02562 * 18 17 15
40 40 H 1.08003 * 120.04691 * 180.02562 * 27 9 8
41 41 H 1.07999 * 119.95155 * 180.02562 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 -0.0006
5 8 3.9649 0.5796 -1.2219
6 6 5.3001 0.3989 -1.3838
7 6 6.1793 0.7917 -0.3814
8 6 7.5352 0.6149 -0.5440
9 6 8.0261 0.0290 -1.7138
10 6 9.4782 -0.1684 -1.8895
11 8 10.2490 0.1784 -1.0155
12 7 9.9498 -0.7332 -3.0187
13 6 11.3912 -0.9297 -3.1928
14 1 11.8440 -1.1689 -2.2306
15 6 11.6308 -2.0630 -4.1566
16 1 10.7932 -2.5850 -4.5953
17 6 12.9192 -2.4342 -4.4777
18 7 13.9391 -1.7989 -3.9431
19 14 13.2163 -3.8396 -5.6719
20 1 13.2900 -3.3060 -7.0557
21 1 14.4946 -4.5152 -5.3331
22 1 12.1005 -4.8147 -5.5762
23 6 12.0173 0.3518 -3.7466
24 9 11.7948 1.4040 -2.8519
25 9 13.3936 0.1640 -3.9134
26 9 11.4360 0.6590 -4.9815
27 6 7.1386 -0.3697 -2.7168
28 6 5.7844 -0.1845 -2.5487
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 1.6886 1.8464 0.8900
33 1 1.6886 1.8465 -0.8900
34 1 3.8514 0.5682 0.8410
35 1 3.9785 2.1765 0.0890
36 1 5.7988 1.2403 0.5244
37 1 8.2180 0.9243 0.2334
38 1 9.3348 -1.0102 -3.7158
39 1 14.8456 -2.0597 -4.1692
40 1 7.5141 -0.8232 -3.6222
41 1 5.0978 -0.4928 -3.3232
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000928810009.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:34
Heat of formation + Delta-G solvation = -248.081038 kcal
Electronic energy + Delta-G solvation = -30357.598183 eV
Core-core repulsion = 25402.178121 eV
Total energy + Delta-G solvation = -4955.420062 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-50.42880 -48.06470 -47.73508 -41.46669 -40.49242 -38.87325 -37.88101 -36.53958
-34.53133 -32.43731 -32.09285 -30.93902 -29.64752 -27.25007 -26.61010 -25.04484
-24.56839 -23.07224 -22.80158 -21.45413 -19.79493 -19.31524 -18.87046 -18.69930
-18.49515 -17.82189 -17.67808 -17.02523 -16.79866 -16.59471 -16.34005 -16.21115
-15.84059 -15.55715 -15.41456 -15.03026 -14.97822 -14.61511 -14.48683 -14.45201
-14.31153 -14.19835 -14.02302 -13.85355 -13.62766 -13.59938 -13.13331 -13.02814
-12.75939 -12.65889 -12.61355 -12.30403 -12.21134 -11.87659 -11.76699 -11.57418
-10.98635 -10.69570 -10.64881 -10.14162 -10.09929 -9.26915 -8.21384 -6.52569
-0.11741 0.31924 1.47460 1.48253 1.59793 1.83490 2.10891 2.16923
2.39354 2.52190 2.81499 2.85115 2.94857 3.67682 3.71281 3.79896
3.82816 3.88549 3.99546 4.12645 4.16876 4.20934 4.33839 4.36880
4.45162 4.53155 4.55630 4.60203 4.72494 4.87499 4.89414 4.98670
5.13546 5.23204 5.34442 5.38283 5.54320 5.60406 5.64204 6.19411
6.35487 6.51767 6.68590 7.15712 7.30469 8.71491
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.020983 B = 0.002246 C = 0.002119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1334.122071 B =12464.423201 C =13211.841421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.418 6.418
3 C 0.060 3.940
4 C 0.046 3.954
5 O -0.314 6.314
6 C 0.156 3.844
7 C -0.212 4.212
8 C -0.028 4.028
9 C -0.190 4.190
10 C 0.548 3.452
11 O -0.580 6.580
12 N -0.702 5.702
13 C 0.251 3.749
14 H 0.048 0.952
15 C -0.561 4.561
16 H 0.094 0.906
17 C 0.014 3.986
18 N -0.875 5.875
19 Si 0.985 3.015
20 H -0.273 1.273
21 H -0.283 1.283
22 H -0.256 1.256
23 C 0.414 3.586
24 F -0.220 7.220
25 F -0.150 7.150
26 F -0.202 7.202
27 C -0.040 4.040
28 C -0.160 4.160
29 H 0.090 0.910
30 H 0.057 0.943
31 H 0.049 0.951
32 H 0.100 0.900
33 H 0.066 0.934
34 H 0.077 0.923
35 H 0.104 0.896
36 H 0.162 0.838
37 H 0.131 0.869
38 H 0.412 0.588
39 H 0.269 0.731
40 H 0.150 0.850
41 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.969 4.852 5.264 25.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.338 6.338
3 C -0.016 4.016
4 C -0.028 4.028
5 O -0.227 6.227
6 C 0.109 3.891
7 C -0.231 4.231
8 C -0.047 4.047
9 C -0.193 4.193
10 C 0.338 3.662
11 O -0.462 6.462
12 N -0.352 5.352
13 C 0.144 3.856
14 H 0.066 0.934
15 C -0.598 4.598
16 H 0.112 0.888
17 C -0.192 4.192
18 N -0.509 5.509
19 Si 0.808 3.192
20 H -0.199 1.199
21 H -0.208 1.208
22 H -0.180 1.180
23 C 0.358 3.642
24 F -0.202 7.202
25 F -0.131 7.131
26 F -0.184 7.184
27 C -0.059 4.059
28 C -0.178 4.178
29 H 0.108 0.892
30 H 0.075 0.925
31 H 0.067 0.933
32 H 0.118 0.882
33 H 0.084 0.916
34 H 0.095 0.905
35 H 0.122 0.878
36 H 0.179 0.821
37 H 0.149 0.851
38 H 0.250 0.750
39 H 0.079 0.921
40 H 0.168 0.832
41 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -24.261 4.917 5.754 25.414
hybrid contribution 0.636 0.021 -0.636 0.899
sum -23.626 4.938 5.118 24.673
Atomic orbital electron populations
1.22911 0.79365 1.03689 1.01048 1.87927 1.21591 1.28581 1.95680
1.22750 0.90591 0.85296 1.03010 1.23262 0.94752 0.99485 0.85290
1.86087 1.19275 1.76545 1.40823 1.19371 0.82832 0.92878 0.94015
1.21373 0.92467 1.07988 1.01248 1.21107 0.95556 0.92666 0.95357
1.19784 0.91098 1.09443 0.98974 1.18868 0.89225 0.76538 0.81562
1.90729 1.59966 1.52237 1.43236 1.45850 1.07936 1.61583 1.19874
1.19357 0.78698 0.89143 0.98393 0.93442 1.21217 0.94210 1.16172
1.28158 0.88835 1.26029 0.95442 0.99501 0.98205 1.70534 0.99674
1.38369 1.42284 0.85134 0.78059 0.78038 0.77953 1.19886 1.20834
1.17979 1.23281 0.78900 0.86895 0.75145 1.93061 1.94876 1.63020
1.69195 1.93378 1.30563 1.93969 1.95174 1.92985 1.84861 1.94315
1.46259 1.21309 0.92252 0.94717 0.97588 1.20555 0.95038 1.04321
0.97927 0.89179 0.92480 0.93257 0.88237 0.91624 0.90463 0.87802
0.82081 0.85116 0.74993 0.92137 0.83233 0.82545
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 113.37 1.25 1.49 16
2 O -0.42 -6.79 10.67 -144.34 -1.54 -8.33 16
3 C 0.06 0.63 6.32 71.98 0.45 1.09 16
4 C 0.05 0.59 5.12 71.98 0.37 0.95 16
5 O -0.31 -6.22 10.09 -85.60 -0.86 -7.08 16
6 C 0.16 3.42 6.70 22.63 0.15 3.57 16
7 C -0.21 -4.60 9.01 22.33 0.20 -4.39 16
8 C -0.03 -0.79 9.58 22.51 0.22 -0.58 16
9 C -0.19 -6.15 5.87 -20.08 -0.12 -6.27 16
10 C 0.55 23.09 7.30 86.71 0.63 23.73 16
11 O -0.58 -29.06 14.91 -3.99 -0.06 -29.12 16
12 N -0.70 -29.68 4.94 -449.21 -2.22 -31.90 16
13 C 0.25 12.91 2.21 44.24 0.10 13.01 16
14 H 0.05 2.81 7.58 -2.39 -0.02 2.79 16
15 C -0.56 -28.60 8.46 25.60 0.22 -28.38 16
16 H 0.09 4.36 7.74 -2.91 -0.02 4.34 16
17 C 0.01 0.70 5.20 84.65 0.44 1.14 16
18 N -0.87 -48.95 9.50 21.45 0.20 -48.74 16
19 Si 0.98 40.73 29.54 68.60 2.03 42.75 16
20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16
21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16
22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16
23 C 0.41 21.95 2.81 71.98 0.20 22.15 16
24 F -0.22 -11.67 15.67 44.97 0.70 -10.97 16
25 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16
26 F -0.20 -10.09 16.94 44.97 0.76 -9.33 16
27 C -0.04 -1.03 9.53 22.51 0.21 -0.82 16
28 C -0.16 -3.56 9.97 22.33 0.22 -3.34 16
29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16
31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16
32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16
33 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16
34 H 0.08 0.94 7.64 -2.38 -0.02 0.92 16
35 H 0.10 0.83 7.66 -2.38 -0.02 0.81 16
36 H 0.16 2.40 6.28 -2.91 -0.02 2.38 16
37 H 0.13 3.86 7.64 -2.91 -0.02 3.84 16
38 H 0.41 14.54 6.56 -92.71 -0.61 13.93 16
39 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16
40 H 0.15 3.30 6.39 -2.91 -0.02 3.29 16
41 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16
Total: -1.00 -71.51 360.15 4.63 -66.88
By element:
Atomic # 1 Polarization: 19.99 SS G_CDS: 0.49 Total: 20.47 kcal
Atomic # 6 Polarization: 18.81 SS G_CDS: 4.55 Total: 23.36 kcal
Atomic # 7 Polarization: -78.62 SS G_CDS: -2.01 Total: -80.64 kcal
Atomic # 8 Polarization: -42.07 SS G_CDS: -2.46 Total: -44.53 kcal
Atomic # 9 Polarization: -30.34 SS G_CDS: 2.05 Total: -28.29 kcal
Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal
Total: -71.51 4.63 -66.88 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928810009.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -181.206 kcal
(2) G-P(sol) polarization free energy of solvation -71.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) -248.081 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds