Wall clock time and date at job start Wed Apr 1 2020 04:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99878 * 2 1 4 4 C 1.53000 * 109.46589 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47632 * 65.00020 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46811 * 34.99484 * 13 12 10 15 15 C 1.50695 * 109.47248 * 155.00091 * 13 12 10 16 16 H 1.08003 * 119.99760 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00158 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00059 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 120.00269 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46988 * 89.99695 * 19 17 15 21 21 H 1.48499 * 109.47031 * 209.99894 * 19 17 15 22 22 H 1.48495 * 109.47015 * 329.99741 * 19 17 15 23 23 C 1.52997 * 109.46852 * 274.99883 * 13 12 10 24 24 F 1.39899 * 109.47395 * 59.99869 * 23 13 12 25 25 F 1.39903 * 109.47063 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47463 * 299.99839 * 23 13 12 27 27 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 28 28 C 1.37709 * 119.90833 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47025 * 299.99823 * 1 2 3 31 31 H 1.09005 * 109.47163 * 59.99621 * 1 2 3 32 32 H 1.08997 * 109.46810 * 60.00284 * 3 2 1 33 33 H 1.09004 * 109.47107 * 300.00048 * 3 2 1 34 34 H 1.09007 * 109.46974 * 304.99412 * 4 3 2 35 35 H 1.09005 * 109.46584 * 185.00457 * 4 3 2 36 36 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 38 38 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 39 39 H 0.97000 * 120.00302 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.04691 * 180.02562 * 27 9 8 41 41 H 1.07999 * 119.95155 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3001 0.3989 -1.3838 7 6 6.1793 0.7917 -0.3814 8 6 7.5352 0.6149 -0.5440 9 6 8.0261 0.0290 -1.7138 10 6 9.4782 -0.1684 -1.8895 11 8 10.2490 0.1784 -1.0155 12 7 9.9498 -0.7332 -3.0187 13 6 11.3912 -0.9297 -3.1928 14 1 11.8440 -1.1689 -2.2306 15 6 11.6308 -2.0630 -4.1566 16 1 10.7932 -2.5850 -4.5953 17 6 12.9192 -2.4342 -4.4777 18 7 13.9391 -1.7989 -3.9431 19 14 13.2163 -3.8396 -5.6719 20 1 13.2900 -3.3060 -7.0557 21 1 14.4946 -4.5152 -5.3331 22 1 12.1005 -4.8147 -5.5762 23 6 12.0173 0.3518 -3.7466 24 9 11.7948 1.4040 -2.8519 25 9 13.3936 0.1640 -3.9134 26 9 11.4360 0.6590 -4.9815 27 6 7.1386 -0.3697 -2.7168 28 6 5.7844 -0.1845 -2.5487 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9785 2.1765 0.0890 36 1 5.7988 1.2403 0.5244 37 1 8.2180 0.9243 0.2334 38 1 9.3348 -1.0102 -3.7158 39 1 14.8456 -2.0597 -4.1692 40 1 7.5141 -0.8232 -3.6222 41 1 5.0978 -0.4928 -3.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:34 Heat of formation + Delta-G solvation = -248.081038 kcal Electronic energy + Delta-G solvation = -30357.598183 eV Core-core repulsion = 25402.178121 eV Total energy + Delta-G solvation = -4955.420062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.42880 -48.06470 -47.73508 -41.46669 -40.49242 -38.87325 -37.88101 -36.53958 -34.53133 -32.43731 -32.09285 -30.93902 -29.64752 -27.25007 -26.61010 -25.04484 -24.56839 -23.07224 -22.80158 -21.45413 -19.79493 -19.31524 -18.87046 -18.69930 -18.49515 -17.82189 -17.67808 -17.02523 -16.79866 -16.59471 -16.34005 -16.21115 -15.84059 -15.55715 -15.41456 -15.03026 -14.97822 -14.61511 -14.48683 -14.45201 -14.31153 -14.19835 -14.02302 -13.85355 -13.62766 -13.59938 -13.13331 -13.02814 -12.75939 -12.65889 -12.61355 -12.30403 -12.21134 -11.87659 -11.76699 -11.57418 -10.98635 -10.69570 -10.64881 -10.14162 -10.09929 -9.26915 -8.21384 -6.52569 -0.11741 0.31924 1.47460 1.48253 1.59793 1.83490 2.10891 2.16923 2.39354 2.52190 2.81499 2.85115 2.94857 3.67682 3.71281 3.79896 3.82816 3.88549 3.99546 4.12645 4.16876 4.20934 4.33839 4.36880 4.45162 4.53155 4.55630 4.60203 4.72494 4.87499 4.89414 4.98670 5.13546 5.23204 5.34442 5.38283 5.54320 5.60406 5.64204 6.19411 6.35487 6.51767 6.68590 7.15712 7.30469 8.71491 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.002246 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.122071 B =12464.423201 C =13211.841421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.046 3.954 5 O -0.314 6.314 6 C 0.156 3.844 7 C -0.212 4.212 8 C -0.028 4.028 9 C -0.190 4.190 10 C 0.548 3.452 11 O -0.580 6.580 12 N -0.702 5.702 13 C 0.251 3.749 14 H 0.048 0.952 15 C -0.561 4.561 16 H 0.094 0.906 17 C 0.014 3.986 18 N -0.875 5.875 19 Si 0.985 3.015 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.256 1.256 23 C 0.414 3.586 24 F -0.220 7.220 25 F -0.150 7.150 26 F -0.202 7.202 27 C -0.040 4.040 28 C -0.160 4.160 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.412 0.588 39 H 0.269 0.731 40 H 0.150 0.850 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.969 4.852 5.264 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.028 4.028 5 O -0.227 6.227 6 C 0.109 3.891 7 C -0.231 4.231 8 C -0.047 4.047 9 C -0.193 4.193 10 C 0.338 3.662 11 O -0.462 6.462 12 N -0.352 5.352 13 C 0.144 3.856 14 H 0.066 0.934 15 C -0.598 4.598 16 H 0.112 0.888 17 C -0.192 4.192 18 N -0.509 5.509 19 Si 0.808 3.192 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.180 1.180 23 C 0.358 3.642 24 F -0.202 7.202 25 F -0.131 7.131 26 F -0.184 7.184 27 C -0.059 4.059 28 C -0.178 4.178 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.179 0.821 37 H 0.149 0.851 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.168 0.832 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.261 4.917 5.754 25.414 hybrid contribution 0.636 0.021 -0.636 0.899 sum -23.626 4.938 5.118 24.673 Atomic orbital electron populations 1.22911 0.79365 1.03689 1.01048 1.87927 1.21591 1.28581 1.95680 1.22750 0.90591 0.85296 1.03010 1.23262 0.94752 0.99485 0.85290 1.86087 1.19275 1.76545 1.40823 1.19371 0.82832 0.92878 0.94015 1.21373 0.92467 1.07988 1.01248 1.21107 0.95556 0.92666 0.95357 1.19784 0.91098 1.09443 0.98974 1.18868 0.89225 0.76538 0.81562 1.90729 1.59966 1.52237 1.43236 1.45850 1.07936 1.61583 1.19874 1.19357 0.78698 0.89143 0.98393 0.93442 1.21217 0.94210 1.16172 1.28158 0.88835 1.26029 0.95442 0.99501 0.98205 1.70534 0.99674 1.38369 1.42284 0.85134 0.78059 0.78038 0.77953 1.19886 1.20834 1.17979 1.23281 0.78900 0.86895 0.75145 1.93061 1.94876 1.63020 1.69195 1.93378 1.30563 1.93969 1.95174 1.92985 1.84861 1.94315 1.46259 1.21309 0.92252 0.94717 0.97588 1.20555 0.95038 1.04321 0.97927 0.89179 0.92480 0.93257 0.88237 0.91624 0.90463 0.87802 0.82081 0.85116 0.74993 0.92137 0.83233 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.79 10.67 -144.34 -1.54 -8.33 16 3 C 0.06 0.63 6.32 71.98 0.45 1.09 16 4 C 0.05 0.59 5.12 71.98 0.37 0.95 16 5 O -0.31 -6.22 10.09 -85.60 -0.86 -7.08 16 6 C 0.16 3.42 6.70 22.63 0.15 3.57 16 7 C -0.21 -4.60 9.01 22.33 0.20 -4.39 16 8 C -0.03 -0.79 9.58 22.51 0.22 -0.58 16 9 C -0.19 -6.15 5.87 -20.08 -0.12 -6.27 16 10 C 0.55 23.09 7.30 86.71 0.63 23.73 16 11 O -0.58 -29.06 14.91 -3.99 -0.06 -29.12 16 12 N -0.70 -29.68 4.94 -449.21 -2.22 -31.90 16 13 C 0.25 12.91 2.21 44.24 0.10 13.01 16 14 H 0.05 2.81 7.58 -2.39 -0.02 2.79 16 15 C -0.56 -28.60 8.46 25.60 0.22 -28.38 16 16 H 0.09 4.36 7.74 -2.91 -0.02 4.34 16 17 C 0.01 0.70 5.20 84.65 0.44 1.14 16 18 N -0.87 -48.95 9.50 21.45 0.20 -48.74 16 19 Si 0.98 40.73 29.54 68.60 2.03 42.75 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 23 C 0.41 21.95 2.81 71.98 0.20 22.15 16 24 F -0.22 -11.67 15.67 44.97 0.70 -10.97 16 25 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 26 F -0.20 -10.09 16.94 44.97 0.76 -9.33 16 27 C -0.04 -1.03 9.53 22.51 0.21 -0.82 16 28 C -0.16 -3.56 9.97 22.33 0.22 -3.34 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.94 7.64 -2.38 -0.02 0.92 16 35 H 0.10 0.83 7.66 -2.38 -0.02 0.81 16 36 H 0.16 2.40 6.28 -2.91 -0.02 2.38 16 37 H 0.13 3.86 7.64 -2.91 -0.02 3.84 16 38 H 0.41 14.54 6.56 -92.71 -0.61 13.93 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 40 H 0.15 3.30 6.39 -2.91 -0.02 3.29 16 41 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -71.51 360.15 4.63 -66.88 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.49 Total: 20.47 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 4.55 Total: 23.36 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.01 Total: -80.64 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -2.46 Total: -44.53 kcal Atomic # 9 Polarization: -30.34 SS G_CDS: 2.05 Total: -28.29 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -71.51 4.63 -66.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.206 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds