Wall clock time and date at job start Wed Apr 1 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 3 7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4 8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5 9 9 C 1.38008 * 120.21447 * 0.55332 * 8 7 6 10 10 C 1.39574 * 119.95831 * 359.72018 * 9 8 7 11 11 C 1.47857 * 120.11320 * 180.02562 * 10 9 8 12 12 O 1.21547 * 119.99425 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00124 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99884 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47218 * 325.01142 * 14 13 11 16 16 C 1.50693 * 109.47149 * 205.00125 * 14 13 11 17 17 H 1.07998 * 120.00273 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99780 * 180.02562 * 16 14 13 19 19 N 1.31508 * 120.00120 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99834 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47044 * 90.00165 * 20 18 16 22 22 H 1.48499 * 109.47084 * 209.99883 * 20 18 16 23 23 H 1.48497 * 109.47273 * 330.00533 * 20 18 16 24 24 C 1.52998 * 109.46688 * 85.00475 * 14 13 11 25 25 F 1.39904 * 109.47330 * 60.00128 * 24 14 13 26 26 F 1.39900 * 109.47126 * 179.97438 * 24 14 13 27 27 F 1.39904 * 109.47226 * 300.00019 * 24 14 13 28 28 C 1.38453 * 119.98882 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 31 31 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 32 32 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 33 33 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 34 34 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 35 35 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 36 36 H 1.07996 * 119.87974 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.89531 * 180.25450 * 8 7 6 38 38 H 1.07990 * 120.02409 * 179.74775 * 9 8 7 39 39 H 0.97003 * 119.99946 * 0.02562 * 13 11 10 40 40 H 0.97007 * 120.00228 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.09622 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3031 0.3976 -1.3808 7 6 6.1827 0.7998 -0.3844 8 6 7.5434 0.6121 -0.5399 9 6 8.0377 0.0340 -1.6915 10 6 7.1616 -0.3683 -2.7008 11 6 7.6874 -0.9886 -3.9357 12 8 6.9225 -1.3385 -4.8131 13 7 9.0146 -1.1658 -4.0885 14 6 9.5355 -1.7809 -5.3119 15 1 8.8377 -2.5418 -5.6615 16 6 10.8708 -2.4176 -5.0248 17 1 11.2895 -2.3693 -4.0305 18 6 11.5581 -3.0617 -6.0317 19 7 11.0485 -3.1201 -7.2426 20 14 13.2131 -3.8515 -5.6757 21 1 13.0086 -5.2603 -5.2530 22 1 14.0509 -3.8192 -6.9014 23 1 13.8955 -3.1030 -4.5898 24 6 9.7030 -0.7086 -6.3903 25 9 10.5986 0.2681 -5.9416 26 9 10.2009 -1.2958 -7.5584 27 9 8.4633 -0.1175 -6.6568 28 6 5.7882 -0.1830 -2.5403 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9783 2.1768 0.0902 35 1 3.8508 0.5687 0.8427 36 1 5.8020 1.2572 0.5168 37 1 8.2224 0.9233 0.2402 38 1 9.1015 -0.1074 -1.8114 39 1 9.6250 -0.8868 -3.3881 40 1 11.5322 -3.5730 -7.9511 41 1 5.1054 -0.4916 -3.3182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:38 Heat of formation + Delta-G solvation = -225.156490 kcal Electronic energy + Delta-G solvation = -30516.172576 eV Core-core repulsion = 25561.746597 eV Total energy + Delta-G solvation = -4954.425979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.33860 -45.99250 -45.60326 -40.37768 -39.13134 -38.11389 -36.89408 -34.72650 -32.66533 -31.55201 -31.06456 -29.57192 -28.15030 -26.71551 -24.65747 -24.31884 -22.82633 -22.40172 -21.23541 -19.95088 -18.77539 -17.23481 -17.16515 -16.90419 -16.67311 -16.61286 -16.25438 -16.01358 -15.80793 -15.49971 -15.43917 -14.94146 -14.64323 -14.48146 -14.01863 -13.70803 -13.33522 -13.11745 -12.92558 -12.87050 -12.51886 -12.47098 -12.38947 -12.28471 -12.12843 -12.01098 -11.84214 -11.75800 -11.66513 -11.19840 -11.10830 -10.98147 -10.84982 -10.80055 -10.41535 -10.09555 -9.68211 -9.36540 -9.00036 -8.72817 -8.32568 -8.24522 -6.24022 -4.48314 0.92826 1.40649 2.91262 3.17538 3.19953 3.25168 3.27921 3.33846 3.78687 4.04435 4.21073 4.46132 4.57797 4.68168 4.73487 4.78662 4.84922 4.91406 4.92962 4.99829 5.02785 5.10485 5.19293 5.25567 5.34026 5.44237 5.54532 5.84451 5.87445 5.92503 6.16931 6.22918 6.33437 6.41567 6.57546 6.72972 6.93244 7.13615 7.30269 7.45740 7.62197 8.27660 8.48611 8.82408 9.19392 10.67557 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002344 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.143351 B =11941.698470 C =12295.336757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.305 6.305 6 C 0.120 3.880 7 C -0.194 4.194 8 C -0.088 4.088 9 C -0.124 4.124 10 C -0.082 4.082 11 C 0.547 3.453 12 O -0.527 6.527 13 N -0.704 5.704 14 C 0.244 3.756 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.136 7.136 27 F -0.217 7.217 28 C -0.093 4.093 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.399 0.601 40 H 0.268 0.732 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 9.320 16.382 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.219 6.219 6 C 0.075 3.925 7 C -0.213 4.213 8 C -0.106 4.106 9 C -0.143 4.143 10 C -0.085 4.085 11 C 0.333 3.667 12 O -0.404 6.404 13 N -0.354 5.354 14 C 0.139 3.861 15 H 0.105 0.895 16 C -0.589 4.589 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.361 3.639 25 F -0.191 7.191 26 F -0.117 7.117 27 F -0.199 7.199 28 C -0.113 4.113 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.036 8.783 15.354 21.973 hybrid contribution 1.076 0.383 0.472 1.235 sum -11.960 9.166 15.825 21.852 Atomic orbital electron populations 1.22766 0.80773 1.03103 0.99922 1.87987 1.19867 1.26984 1.95397 1.22577 0.91574 0.85890 1.01417 1.22835 0.93732 0.98188 0.86737 1.86156 1.19869 1.77007 1.38829 1.18806 0.82457 0.96737 0.94492 1.21339 0.94308 1.06010 0.99594 1.20839 0.94512 0.97873 0.97344 1.21310 0.99864 0.99603 0.93506 1.19906 0.93246 1.00214 0.95125 1.18221 0.83051 0.79248 0.86196 1.90778 1.57060 1.50099 1.42505 1.46002 1.06136 1.61780 1.21437 1.19770 0.98445 0.88687 0.79206 0.89522 1.20859 1.02505 1.37650 0.97920 0.90399 1.25088 0.99155 0.95656 0.94533 1.70401 1.38350 1.37398 1.01026 0.86199 0.81944 0.79508 0.78105 1.20169 1.20795 1.19509 1.23112 0.72032 0.82558 0.86212 1.92989 1.69896 1.66457 1.89760 1.93407 1.86616 1.81609 1.50081 1.93076 1.45243 1.86490 1.95088 1.20482 0.94662 0.99641 0.96479 0.89395 0.94138 0.93834 0.91149 0.91939 0.90405 0.91031 0.85441 0.85231 0.85075 0.76604 0.92075 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.90 10.67 -40.09 -0.43 -4.33 16 3 C 0.06 0.47 6.32 37.16 0.23 0.70 16 4 C 0.06 0.51 5.12 37.16 0.19 0.70 16 5 O -0.30 -3.91 10.10 -24.32 -0.25 -4.15 16 6 C 0.12 1.62 6.68 -39.27 -0.26 1.36 16 7 C -0.19 -2.12 9.03 -39.35 -0.36 -2.48 16 8 C -0.09 -0.96 10.03 -39.66 -0.40 -1.36 16 9 C -0.12 -1.66 9.54 -39.17 -0.37 -2.03 16 10 C -0.08 -1.36 5.87 -104.99 -0.62 -1.98 16 11 C 0.55 11.37 7.31 -12.32 -0.09 11.28 16 12 O -0.53 -12.83 14.92 5.32 0.08 -12.75 16 13 N -0.70 -14.70 4.94 -55.88 -0.28 -14.98 16 14 C 0.24 6.12 2.21 -69.08 -0.15 5.97 16 15 H 0.09 2.42 7.58 -51.93 -0.39 2.03 16 16 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 16 17 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 18 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 19 N -0.84 -23.00 9.50 55.43 0.53 -22.48 16 20 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C 0.42 10.81 2.81 37.16 0.10 10.91 16 25 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 26 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 27 F -0.22 -5.62 15.67 2.25 0.04 -5.59 16 28 C -0.09 -1.50 9.53 -39.03 -0.37 -1.87 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.47 7.65 -51.93 -0.40 0.08 16 35 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 36 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.55 6.40 -52.49 -0.34 1.22 16 39 H 0.40 7.11 6.57 -40.82 -0.27 6.84 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.14 2.46 7.65 -52.48 -0.40 2.06 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -32.52 360.22 -5.80 -38.31 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.60 Total: 4.66 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.36 Total: 9.77 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.25 Total: -37.45 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.59 Total: -21.24 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.52 -5.80 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.843 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds