Wall clock time and date at job start Wed Apr 1 2020 04:30:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 113.99649 * 2 1
4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1
5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2
6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 3
7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4
8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5
9 9 C 1.38008 * 120.21447 * 0.55332 * 8 7 6
10 10 C 1.39574 * 119.95831 * 359.72018 * 9 8 7
11 11 C 1.47857 * 120.11320 * 180.02562 * 10 9 8
12 12 O 1.21547 * 119.99425 * 179.97438 * 11 10 9
13 13 N 1.34774 * 120.00124 * 359.97438 * 11 10 9
14 14 C 1.46503 * 119.99884 * 179.97438 * 13 11 10
15 15 H 1.08996 * 109.47218 * 325.01142 * 14 13 11
16 16 C 1.50693 * 109.47149 * 205.00125 * 14 13 11
17 17 H 1.07998 * 120.00273 * 0.02562 * 16 14 13
18 18 C 1.37879 * 119.99780 * 180.02562 * 16 14 13
19 19 N 1.31508 * 120.00120 * 0.02562 * 18 16 14
20 20 Si 1.86804 * 119.99834 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47044 * 90.00165 * 20 18 16
22 22 H 1.48499 * 109.47084 * 209.99883 * 20 18 16
23 23 H 1.48497 * 109.47273 * 330.00533 * 20 18 16
24 24 C 1.52998 * 109.46688 * 85.00475 * 14 13 11
25 25 F 1.39904 * 109.47330 * 60.00128 * 24 14 13
26 26 F 1.39900 * 109.47126 * 179.97438 * 24 14 13
27 27 F 1.39904 * 109.47226 * 300.00019 * 24 14 13
28 28 C 1.38453 * 119.98882 * 180.02562 * 6 5 4
29 29 H 1.09008 * 109.46743 * 180.02562 * 1 2 3
30 30 H 1.08990 * 109.47463 * 299.99806 * 1 2 3
31 31 H 1.08992 * 109.47069 * 60.00902 * 1 2 3
32 32 H 1.09002 * 109.47445 * 59.99875 * 3 2 1
33 33 H 1.09002 * 109.47167 * 299.99793 * 3 2 1
34 34 H 1.09002 * 109.47398 * 184.99964 * 4 3 2
35 35 H 1.09001 * 109.47194 * 305.00145 * 4 3 2
36 36 H 1.07996 * 119.87974 * 359.97438 * 7 6 5
37 37 H 1.07999 * 119.89531 * 180.25450 * 8 7 6
38 38 H 1.07990 * 120.02409 * 179.74775 * 9 8 7
39 39 H 0.97003 * 119.99946 * 0.02562 * 13 11 10
40 40 H 0.97007 * 120.00228 * 179.97438 * 19 18 16
41 41 H 1.08003 * 120.09622 * 0.02562 * 28 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 8 3.9658 0.5794 -1.2201
6 6 5.3031 0.3976 -1.3808
7 6 6.1827 0.7998 -0.3844
8 6 7.5434 0.6121 -0.5399
9 6 8.0377 0.0340 -1.6915
10 6 7.1616 -0.3683 -2.7008
11 6 7.6874 -0.9886 -3.9357
12 8 6.9225 -1.3385 -4.8131
13 7 9.0146 -1.1658 -4.0885
14 6 9.5355 -1.7809 -5.3119
15 1 8.8377 -2.5418 -5.6615
16 6 10.8708 -2.4176 -5.0248
17 1 11.2895 -2.3693 -4.0305
18 6 11.5581 -3.0617 -6.0317
19 7 11.0485 -3.1201 -7.2426
20 14 13.2131 -3.8515 -5.6757
21 1 13.0086 -5.2603 -5.2530
22 1 14.0509 -3.8192 -6.9014
23 1 13.8955 -3.1030 -4.5898
24 6 9.7030 -0.7086 -6.3903
25 9 10.5986 0.2681 -5.9416
26 9 10.2009 -1.2958 -7.5584
27 9 8.4633 -0.1175 -6.6568
28 6 5.7882 -0.1830 -2.5403
29 1 -0.3633 -1.0278 0.0005
30 1 -0.3634 0.5137 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 1.6885 1.8464 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.9783 2.1768 0.0902
35 1 3.8508 0.5687 0.8427
36 1 5.8020 1.2572 0.5168
37 1 8.2224 0.9233 0.2402
38 1 9.1015 -0.1074 -1.8114
39 1 9.6250 -0.8868 -3.3881
40 1 11.5322 -3.5730 -7.9511
41 1 5.1054 -0.4916 -3.3182
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000928813009.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:38
Heat of formation + Delta-G solvation = -225.156490 kcal
Electronic energy + Delta-G solvation = -30516.172576 eV
Core-core repulsion = 25561.746597 eV
Total energy + Delta-G solvation = -4954.425979 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-48.33860 -45.99250 -45.60326 -40.37768 -39.13134 -38.11389 -36.89408 -34.72650
-32.66533 -31.55201 -31.06456 -29.57192 -28.15030 -26.71551 -24.65747 -24.31884
-22.82633 -22.40172 -21.23541 -19.95088 -18.77539 -17.23481 -17.16515 -16.90419
-16.67311 -16.61286 -16.25438 -16.01358 -15.80793 -15.49971 -15.43917 -14.94146
-14.64323 -14.48146 -14.01863 -13.70803 -13.33522 -13.11745 -12.92558 -12.87050
-12.51886 -12.47098 -12.38947 -12.28471 -12.12843 -12.01098 -11.84214 -11.75800
-11.66513 -11.19840 -11.10830 -10.98147 -10.84982 -10.80055 -10.41535 -10.09555
-9.68211 -9.36540 -9.00036 -8.72817 -8.32568 -8.24522 -6.24022 -4.48314
0.92826 1.40649 2.91262 3.17538 3.19953 3.25168 3.27921 3.33846
3.78687 4.04435 4.21073 4.46132 4.57797 4.68168 4.73487 4.78662
4.84922 4.91406 4.92962 4.99829 5.02785 5.10485 5.19293 5.25567
5.34026 5.44237 5.54532 5.84451 5.87445 5.92503 6.16931 6.22918
6.33437 6.41567 6.57546 6.72972 6.93244 7.13615 7.30269 7.45740
7.62197 8.27660 8.48611 8.82408 9.19392 10.67557
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.020079 B = 0.002344 C = 0.002277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1394.143351 B =11941.698470 C =12295.336757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.384 6.384
3 C 0.062 3.938
4 C 0.061 3.939
5 O -0.305 6.305
6 C 0.120 3.880
7 C -0.194 4.194
8 C -0.088 4.088
9 C -0.124 4.124
10 C -0.082 4.082
11 C 0.547 3.453
12 O -0.527 6.527
13 N -0.704 5.704
14 C 0.244 3.756
15 H 0.087 0.913
16 C -0.552 4.552
17 H 0.078 0.922
18 C 0.065 3.935
19 N -0.839 5.839
20 Si 0.916 3.084
21 H -0.276 1.276
22 H -0.282 1.282
23 H -0.270 1.270
24 C 0.417 3.583
25 F -0.209 7.209
26 F -0.136 7.136
27 F -0.217 7.217
28 C -0.093 4.093
29 H 0.088 0.912
30 H 0.040 0.960
31 H 0.043 0.957
32 H 0.071 0.929
33 H 0.062 0.938
34 H 0.078 0.922
35 H 0.071 0.929
36 H 0.128 0.872
37 H 0.130 0.870
38 H 0.131 0.869
39 H 0.399 0.601
40 H 0.268 0.732
41 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.483 9.320 16.382 22.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.302 6.302
3 C -0.015 4.015
4 C -0.015 4.015
5 O -0.219 6.219
6 C 0.075 3.925
7 C -0.213 4.213
8 C -0.106 4.106
9 C -0.143 4.143
10 C -0.085 4.085
11 C 0.333 3.667
12 O -0.404 6.404
13 N -0.354 5.354
14 C 0.139 3.861
15 H 0.105 0.895
16 C -0.589 4.589
17 H 0.096 0.904
18 C -0.144 4.144
19 N -0.472 5.472
20 Si 0.742 3.258
21 H -0.202 1.202
22 H -0.208 1.208
23 H -0.195 1.195
24 C 0.361 3.639
25 F -0.191 7.191
26 F -0.117 7.117
27 F -0.199 7.199
28 C -0.113 4.113
29 H 0.106 0.894
30 H 0.059 0.941
31 H 0.062 0.938
32 H 0.089 0.911
33 H 0.081 0.919
34 H 0.096 0.904
35 H 0.090 0.910
36 H 0.146 0.854
37 H 0.148 0.852
38 H 0.149 0.851
39 H 0.234 0.766
40 H 0.079 0.921
41 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -13.036 8.783 15.354 21.973
hybrid contribution 1.076 0.383 0.472 1.235
sum -11.960 9.166 15.825 21.852
Atomic orbital electron populations
1.22766 0.80773 1.03103 0.99922 1.87987 1.19867 1.26984 1.95397
1.22577 0.91574 0.85890 1.01417 1.22835 0.93732 0.98188 0.86737
1.86156 1.19869 1.77007 1.38829 1.18806 0.82457 0.96737 0.94492
1.21339 0.94308 1.06010 0.99594 1.20839 0.94512 0.97873 0.97344
1.21310 0.99864 0.99603 0.93506 1.19906 0.93246 1.00214 0.95125
1.18221 0.83051 0.79248 0.86196 1.90778 1.57060 1.50099 1.42505
1.46002 1.06136 1.61780 1.21437 1.19770 0.98445 0.88687 0.79206
0.89522 1.20859 1.02505 1.37650 0.97920 0.90399 1.25088 0.99155
0.95656 0.94533 1.70401 1.38350 1.37398 1.01026 0.86199 0.81944
0.79508 0.78105 1.20169 1.20795 1.19509 1.23112 0.72032 0.82558
0.86212 1.92989 1.69896 1.66457 1.89760 1.93407 1.86616 1.81609
1.50081 1.93076 1.45243 1.86490 1.95088 1.20482 0.94662 0.99641
0.96479 0.89395 0.94138 0.93834 0.91149 0.91939 0.90405 0.91031
0.85441 0.85231 0.85075 0.76604 0.92075 0.83790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 11.01 101.05 1.11 1.32 16
2 O -0.38 -3.90 10.67 -40.09 -0.43 -4.33 16
3 C 0.06 0.47 6.32 37.16 0.23 0.70 16
4 C 0.06 0.51 5.12 37.16 0.19 0.70 16
5 O -0.30 -3.91 10.10 -24.32 -0.25 -4.15 16
6 C 0.12 1.62 6.68 -39.27 -0.26 1.36 16
7 C -0.19 -2.12 9.03 -39.35 -0.36 -2.48 16
8 C -0.09 -0.96 10.03 -39.66 -0.40 -1.36 16
9 C -0.12 -1.66 9.54 -39.17 -0.37 -2.03 16
10 C -0.08 -1.36 5.87 -104.99 -0.62 -1.98 16
11 C 0.55 11.37 7.31 -12.32 -0.09 11.28 16
12 O -0.53 -12.83 14.92 5.32 0.08 -12.75 16
13 N -0.70 -14.70 4.94 -55.88 -0.28 -14.98 16
14 C 0.24 6.12 2.21 -69.08 -0.15 5.97 16
15 H 0.09 2.42 7.58 -51.93 -0.39 2.03 16
16 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 16
17 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16
18 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16
19 N -0.84 -23.00 9.50 55.43 0.53 -22.48 16
20 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16
21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16
24 C 0.42 10.81 2.81 37.16 0.10 10.91 16
25 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16
26 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16
27 F -0.22 -5.62 15.67 2.25 0.04 -5.59 16
28 C -0.09 -1.50 9.53 -39.03 -0.37 -1.87 16
29 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16
30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16
31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.08 0.47 7.65 -51.93 -0.40 0.08 16
35 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16
36 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16
37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16
38 H 0.13 1.55 6.40 -52.49 -0.34 1.22 16
39 H 0.40 7.11 6.57 -40.82 -0.27 6.84 16
40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
41 H 0.14 2.46 7.65 -52.48 -0.40 2.06 16
LS Contribution 360.22 15.07 5.43 5.43
Total: -1.00 -32.52 360.22 -5.80 -38.31
By element:
Atomic # 1 Polarization: 9.26 SS G_CDS: -4.60 Total: 4.66 kcal
Atomic # 6 Polarization: 11.14 SS G_CDS: -1.36 Total: 9.77 kcal
Atomic # 7 Polarization: -37.71 SS G_CDS: 0.25 Total: -37.45 kcal
Atomic # 8 Polarization: -20.64 SS G_CDS: -0.59 Total: -21.24 kcal
Atomic # 9 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -32.52 -5.80 -38.31 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928813009.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -186.843 kcal
(2) G-P(sol) polarization free energy of solvation -32.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -225.156 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds