Wall clock time and date at job start Wed Apr 1 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 3 7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4 8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5 9 9 C 1.38008 * 120.21447 * 0.55332 * 8 7 6 10 10 C 1.39574 * 119.95831 * 359.72018 * 9 8 7 11 11 C 1.47857 * 120.11320 * 180.02562 * 10 9 8 12 12 O 1.21547 * 119.99425 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00124 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99884 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47218 * 325.01142 * 14 13 11 16 16 C 1.50693 * 109.47149 * 205.00125 * 14 13 11 17 17 H 1.07998 * 120.00273 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99780 * 180.02562 * 16 14 13 19 19 N 1.31508 * 120.00120 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99834 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47044 * 90.00165 * 20 18 16 22 22 H 1.48499 * 109.47084 * 209.99883 * 20 18 16 23 23 H 1.48497 * 109.47273 * 330.00533 * 20 18 16 24 24 C 1.52998 * 109.46688 * 85.00475 * 14 13 11 25 25 F 1.39904 * 109.47330 * 60.00128 * 24 14 13 26 26 F 1.39900 * 109.47126 * 179.97438 * 24 14 13 27 27 F 1.39904 * 109.47226 * 300.00019 * 24 14 13 28 28 C 1.38453 * 119.98882 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 31 31 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 32 32 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 33 33 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 34 34 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 35 35 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 36 36 H 1.07996 * 119.87974 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.89531 * 180.25450 * 8 7 6 38 38 H 1.07990 * 120.02409 * 179.74775 * 9 8 7 39 39 H 0.97003 * 119.99946 * 0.02562 * 13 11 10 40 40 H 0.97007 * 120.00228 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.09622 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3031 0.3976 -1.3808 7 6 6.1827 0.7998 -0.3844 8 6 7.5434 0.6121 -0.5399 9 6 8.0377 0.0340 -1.6915 10 6 7.1616 -0.3683 -2.7008 11 6 7.6874 -0.9886 -3.9357 12 8 6.9225 -1.3385 -4.8131 13 7 9.0146 -1.1658 -4.0885 14 6 9.5355 -1.7809 -5.3119 15 1 8.8377 -2.5418 -5.6615 16 6 10.8708 -2.4176 -5.0248 17 1 11.2895 -2.3693 -4.0305 18 6 11.5581 -3.0617 -6.0317 19 7 11.0485 -3.1201 -7.2426 20 14 13.2131 -3.8515 -5.6757 21 1 13.0086 -5.2603 -5.2530 22 1 14.0509 -3.8192 -6.9014 23 1 13.8955 -3.1030 -4.5898 24 6 9.7030 -0.7086 -6.3903 25 9 10.5986 0.2681 -5.9416 26 9 10.2009 -1.2958 -7.5584 27 9 8.4633 -0.1175 -6.6568 28 6 5.7882 -0.1830 -2.5403 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9783 2.1768 0.0902 35 1 3.8508 0.5687 0.8427 36 1 5.8020 1.2572 0.5168 37 1 8.2224 0.9233 0.2402 38 1 9.1015 -0.1074 -1.8114 39 1 9.6250 -0.8868 -3.3881 40 1 11.5322 -3.5730 -7.9511 41 1 5.1054 -0.4916 -3.3182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:37 Heat of formation + Delta-G solvation = -247.216625 kcal Electronic energy + Delta-G solvation = -30517.129175 eV Core-core repulsion = 25561.746597 eV Total energy + Delta-G solvation = -4955.382578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.44658 -48.08289 -47.75160 -41.48004 -40.48119 -38.89033 -37.89946 -36.59324 -34.54929 -32.41276 -32.20080 -30.63009 -29.76900 -27.27003 -26.63398 -25.49494 -23.96524 -23.40274 -22.84268 -21.44829 -20.08640 -18.98893 -18.89897 -18.66481 -18.06210 -17.82223 -17.60486 -17.16209 -16.87281 -16.66828 -16.50045 -16.24046 -16.03604 -15.62312 -15.52383 -15.02959 -14.98756 -14.70971 -14.52896 -14.46252 -14.31914 -14.18798 -14.04386 -13.89824 -13.62612 -13.21926 -13.08467 -12.93372 -12.77711 -12.64146 -12.60508 -12.34799 -12.21624 -11.95120 -11.79516 -11.61113 -11.04435 -10.69323 -10.66579 -10.23821 -9.98799 -9.26847 -8.21908 -6.53574 -0.21697 0.40005 1.47349 1.48525 1.60178 1.79817 1.94096 2.29872 2.40181 2.51285 2.81179 2.84307 2.93991 3.58289 3.76570 3.77838 3.84204 3.96451 4.07292 4.12372 4.15413 4.18568 4.29713 4.36226 4.45113 4.51848 4.53048 4.57907 4.71770 4.86376 4.87857 4.90141 5.20685 5.30147 5.33103 5.36914 5.51368 5.62744 5.66665 6.18926 6.42639 6.50547 6.63156 7.13313 7.25318 8.71034 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002344 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.143351 B =11941.698470 C =12295.336757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.049 3.951 5 O -0.330 6.330 6 C 0.118 3.882 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.123 4.123 10 C -0.106 4.106 11 C 0.543 3.457 12 O -0.576 6.576 13 N -0.696 5.696 14 C 0.250 3.750 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.096 0.904 18 C 0.013 3.987 19 N -0.875 5.875 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.255 1.255 24 C 0.414 3.586 25 F -0.201 7.201 26 F -0.149 7.149 27 F -0.221 7.221 28 C -0.121 4.121 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.147 0.853 39 H 0.415 0.585 40 H 0.269 0.731 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 10.872 20.427 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.025 4.025 5 O -0.245 6.245 6 C 0.072 3.928 7 C -0.192 4.192 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.109 4.109 11 C 0.332 3.668 12 O -0.457 6.457 13 N -0.347 5.347 14 C 0.143 3.857 15 H 0.064 0.936 16 C -0.597 4.597 17 H 0.114 0.886 18 C -0.192 4.192 19 N -0.509 5.509 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.179 1.179 24 C 0.358 3.642 25 F -0.183 7.183 26 F -0.130 7.130 27 F -0.203 7.203 28 C -0.141 4.141 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.187 0.813 37 H 0.193 0.807 38 H 0.164 0.836 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.928 10.363 19.449 25.058 hybrid contribution 0.581 -0.021 -0.703 0.913 sum -11.346 10.341 18.746 24.230 Atomic orbital electron populations 1.22906 0.79432 1.03630 1.01047 1.87932 1.21580 1.28784 1.95669 1.22793 0.91056 0.85193 1.02872 1.23263 0.94459 0.99584 0.85198 1.86144 1.19507 1.77497 1.41304 1.18814 0.83453 0.96404 0.94107 1.21820 0.93947 1.03746 0.99706 1.21336 0.95184 0.95631 0.96927 1.21541 1.00097 0.99173 0.93390 1.19563 0.93978 1.02846 0.94497 1.18951 0.82446 0.78254 0.87169 1.90738 1.58068 1.52212 1.44672 1.45816 1.06703 1.61596 1.20574 1.19386 0.97877 0.87929 0.80472 0.93554 1.21216 1.02356 1.37429 0.98742 0.88620 1.26054 1.02941 0.96017 0.94222 1.70539 1.39917 1.38379 1.02076 0.85113 0.77197 0.78680 0.78072 1.19580 1.21055 1.17908 1.23278 0.71942 0.82901 0.86103 1.92987 1.69582 1.66107 1.89602 1.93381 1.86797 1.81912 1.50924 1.93066 1.45527 1.86551 1.95131 1.20355 0.94275 1.01868 0.97571 0.89325 0.92022 0.93636 0.87708 0.92314 0.87390 0.90021 0.81255 0.80716 0.83567 0.74698 0.92119 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.15 10.67 -144.34 -1.54 -9.69 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.05 0.69 5.12 71.98 0.37 1.05 16 5 O -0.33 -8.18 10.10 -87.92 -0.89 -9.07 16 6 C 0.12 3.04 6.68 22.47 0.15 3.19 16 7 C -0.17 -3.08 9.03 22.42 0.20 -2.87 16 8 C -0.07 -1.26 10.03 22.22 0.22 -1.04 16 9 C -0.12 -3.01 9.54 22.54 0.21 -2.80 16 10 C -0.11 -3.59 5.87 -20.10 -0.12 -3.71 16 11 C 0.54 23.69 7.31 86.79 0.63 24.32 16 12 O -0.58 -30.24 14.92 -3.86 -0.06 -30.30 16 13 N -0.70 -29.70 4.94 -448.98 -2.22 -31.92 16 14 C 0.25 12.96 2.21 44.24 0.10 13.06 16 15 H 0.05 2.77 7.58 -2.39 -0.02 2.76 16 16 C -0.56 -28.55 8.46 25.60 0.22 -28.34 16 17 H 0.10 4.42 7.74 -2.91 -0.02 4.39 16 18 C 0.01 0.67 5.20 84.66 0.44 1.11 16 19 N -0.88 -49.14 9.50 21.45 0.20 -48.94 16 20 Si 0.99 40.54 29.54 68.60 2.03 42.56 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C 0.41 22.12 2.81 71.98 0.20 22.32 16 25 F -0.20 -10.01 16.94 44.97 0.76 -9.25 16 26 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 27 F -0.22 -11.94 15.67 44.97 0.70 -11.24 16 28 C -0.12 -4.06 9.53 22.63 0.22 -3.84 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.83 7.65 -2.39 -0.02 0.81 16 35 H 0.08 0.97 7.67 -2.39 -0.02 0.95 16 36 H 0.17 1.59 6.28 -2.91 -0.02 1.57 16 37 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 3.04 6.40 -2.92 -0.02 3.02 16 39 H 0.41 14.53 6.57 -92.71 -0.61 13.92 16 40 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 41 H 0.11 4.36 7.65 -2.91 -0.02 4.34 16 Total: -1.00 -75.36 360.22 4.61 -70.75 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.48 Total: 19.87 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 4.55 Total: 25.22 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.01 Total: -80.86 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -2.49 Total: -49.06 kcal Atomic # 9 Polarization: -30.54 SS G_CDS: 2.05 Total: -28.49 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -75.36 4.61 -70.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.463 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds