Wall clock time and date at job start Wed Apr 1 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35912 * 117.00151 * 180.02562 * 5 4 3 7 7 C 1.38848 * 119.98243 * 359.71688 * 6 5 4 8 8 C 1.38240 * 120.23602 * 179.76665 * 7 6 5 9 9 C 1.38008 * 120.20875 * 0.51780 * 8 7 6 10 10 C 1.39566 * 119.96265 * 359.73773 * 9 8 7 11 11 C 1.47854 * 120.11424 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99899 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00558 * 0.02910 * 11 10 9 14 14 C 1.46498 * 120.00018 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47263 * 34.99997 * 14 13 11 16 16 C 1.50710 * 109.46798 * 154.99751 * 14 13 11 17 17 H 1.07999 * 119.99760 * 359.97438 * 16 14 13 18 18 C 1.37874 * 119.99529 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00725 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99711 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47352 * 119.99826 * 20 18 16 23 23 H 1.48497 * 109.47097 * 240.00207 * 20 18 16 24 24 C 1.52998 * 109.47053 * 274.99463 * 14 13 11 25 25 F 1.39903 * 109.47029 * 60.00525 * 24 14 13 26 26 F 1.39908 * 109.47078 * 180.02562 * 24 14 13 27 27 F 1.39895 * 109.47220 * 300.00392 * 24 14 13 28 28 C 1.38454 * 119.98389 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 32 32 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 33 33 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 34 34 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 35 35 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 36 36 H 1.08004 * 119.88169 * 0.02704 * 7 6 5 37 37 H 1.08010 * 119.89531 * 180.25887 * 8 7 6 38 38 H 1.08002 * 120.01699 * 179.72275 * 9 8 7 39 39 H 0.97000 * 119.99839 * 359.97438 * 13 11 10 40 40 H 0.96995 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.10414 * 359.94968 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3020 0.3978 -1.3837 7 6 6.1824 0.7997 -0.3881 8 6 7.5431 0.6129 -0.5450 9 6 8.0363 0.0351 -1.6972 10 6 7.1595 -0.3673 -2.7057 11 6 7.6843 -0.9861 -3.9417 12 8 6.9188 -1.3354 -4.8189 13 7 9.0115 -1.1631 -4.0958 14 6 9.5314 -1.7767 -5.3203 15 1 8.9177 -1.4724 -6.1681 16 6 10.9529 -1.3283 -5.5425 17 1 11.4219 -0.6533 -4.8419 18 6 11.6545 -1.7797 -6.6401 19 7 11.0832 -2.6012 -7.4936 20 14 13.4168 -1.2244 -6.9152 21 1 13.8234 -0.3072 -5.8203 22 1 14.3127 -2.4086 -6.9279 23 1 13.5150 -0.5154 -8.2163 24 6 9.4927 -3.3001 -5.1834 25 9 8.1730 -3.7164 -4.9771 26 9 9.9897 -3.8862 -6.3525 27 9 10.2803 -3.6907 -4.0952 28 6 5.7861 -0.1824 -2.5438 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.8025 1.2562 0.5140 37 1 8.2227 0.9239 0.2348 38 1 9.1003 -0.1053 -1.8184 39 1 9.6225 -0.8841 -3.3960 40 1 11.5770 -2.9191 -8.2656 41 1 5.1027 -0.4917 -3.3208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:41 Heat of formation + Delta-G solvation = -225.195233 kcal Electronic energy + Delta-G solvation = -30527.721919 eV Core-core repulsion = 25573.294260 eV Total energy + Delta-G solvation = -4954.427659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.33464 -45.98872 -45.59916 -40.37852 -39.13081 -38.11270 -36.89429 -34.72636 -32.66635 -31.55205 -31.06531 -29.57183 -28.15050 -26.71365 -24.65942 -24.31852 -22.82626 -22.40195 -21.23491 -19.95078 -18.77560 -17.23229 -17.16709 -16.90257 -16.67240 -16.60811 -16.25480 -16.01589 -15.81009 -15.49936 -15.43279 -14.94286 -14.64840 -14.46961 -14.04078 -13.69678 -13.29915 -13.14489 -12.91348 -12.87651 -12.56770 -12.43115 -12.38238 -12.28096 -12.12574 -12.00744 -11.83913 -11.75084 -11.68086 -11.19053 -11.10275 -10.98516 -10.87362 -10.78926 -10.41638 -10.09382 -9.66043 -9.36636 -9.00052 -8.73878 -8.32556 -8.24537 -6.24355 -4.48512 0.92804 1.40625 2.91236 3.16838 3.19590 3.25070 3.28367 3.33955 3.78703 4.04426 4.20790 4.46245 4.58047 4.68220 4.73522 4.78674 4.84880 4.91384 4.92808 4.99931 5.02801 5.10451 5.19253 5.25594 5.34324 5.44232 5.54514 5.84572 5.87700 5.92477 6.16971 6.23006 6.33425 6.41540 6.57545 6.73207 6.93142 7.13644 7.30277 7.45655 7.62009 8.27576 8.48696 8.82368 9.19235 10.67336 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002381 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.662680 B =11758.225304 C =12441.433853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.060 3.940 5 O -0.305 6.305 6 C 0.120 3.880 7 C -0.194 4.194 8 C -0.088 4.088 9 C -0.124 4.124 10 C -0.082 4.082 11 C 0.547 3.453 12 O -0.527 6.527 13 N -0.704 5.704 14 C 0.244 3.756 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.217 7.217 26 F -0.136 7.136 27 F -0.209 7.209 28 C -0.093 4.093 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.399 0.601 40 H 0.268 0.732 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 9.191 16.470 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.219 6.219 6 C 0.075 3.925 7 C -0.212 4.212 8 C -0.106 4.106 9 C -0.143 4.143 10 C -0.085 4.085 11 C 0.333 3.667 12 O -0.404 6.404 13 N -0.354 5.354 14 C 0.139 3.861 15 H 0.105 0.895 16 C -0.589 4.589 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.361 3.639 25 F -0.199 7.199 26 F -0.117 7.117 27 F -0.191 7.191 28 C -0.113 4.113 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.046 8.566 15.489 21.988 hybrid contribution 1.074 0.332 0.483 1.224 sum -11.971 8.898 15.971 21.853 Atomic orbital electron populations 1.22766 0.80772 1.03106 0.99915 1.87989 1.19868 1.26983 1.95395 1.22577 0.91574 0.85895 1.01410 1.22832 0.93745 0.98186 0.86729 1.86154 1.19886 1.77031 1.38792 1.18802 0.82455 0.96743 0.94488 1.21336 0.94301 1.06024 0.99588 1.20841 0.94520 0.97884 0.97324 1.21310 0.99865 0.99582 0.93526 1.19903 0.93249 1.00152 0.95185 1.18224 0.83029 0.79163 0.86303 1.90781 1.56945 1.50179 1.42544 1.46001 1.06135 1.61437 1.21778 1.19779 0.98334 0.83330 0.84698 0.89518 1.20902 0.95363 1.31716 1.10882 0.90346 1.25091 0.99734 0.94063 0.95565 1.70409 1.37140 1.27888 1.11740 0.86148 0.82625 0.78600 0.78386 1.19382 1.20562 1.20558 1.23105 0.71475 0.95354 0.73987 1.93077 1.38917 1.92731 1.95149 1.93408 1.86295 1.86270 1.45753 1.92987 1.75658 1.93110 1.57336 1.20483 0.94668 0.99601 0.96510 0.93837 0.89393 0.94141 0.91142 0.91949 0.91037 0.90401 0.85441 0.85227 0.85074 0.76605 0.92128 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.93 10.67 -40.08 -0.43 -4.35 16 3 C 0.06 0.47 6.32 37.16 0.23 0.70 16 4 C 0.06 0.51 5.12 37.16 0.19 0.70 16 5 O -0.30 -3.91 10.10 -24.31 -0.25 -4.15 16 6 C 0.12 1.62 6.68 -39.28 -0.26 1.36 16 7 C -0.19 -2.12 9.03 -39.35 -0.36 -2.48 16 8 C -0.09 -0.96 10.03 -39.66 -0.40 -1.36 16 9 C -0.12 -1.66 9.54 -39.17 -0.37 -2.03 16 10 C -0.08 -1.36 5.87 -104.99 -0.62 -1.98 16 11 C 0.55 11.37 7.31 -12.32 -0.09 11.28 16 12 O -0.53 -12.83 14.92 5.32 0.08 -12.75 16 13 N -0.70 -14.70 4.94 -55.87 -0.28 -14.97 16 14 C 0.24 6.11 2.21 -69.08 -0.15 5.96 16 15 H 0.09 2.42 7.58 -51.93 -0.39 2.03 16 16 C -0.55 -14.01 8.47 -34.44 -0.29 -14.30 16 17 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 18 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 19 N -0.84 -22.99 9.50 55.43 0.53 -22.47 16 20 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.42 10.83 2.81 37.16 0.10 10.94 16 25 F -0.22 -5.64 15.68 2.25 0.04 -5.61 16 26 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 27 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 28 C -0.09 -1.50 9.53 -39.02 -0.37 -1.87 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 35 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 36 H 0.13 1.00 6.28 -52.48 -0.33 0.67 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.13 1.55 6.40 -52.49 -0.34 1.22 16 39 H 0.40 7.10 6.57 -40.82 -0.27 6.84 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.14 2.46 7.65 -52.49 -0.40 2.06 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -32.57 360.23 -5.80 -38.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.60 Total: 4.65 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.36 Total: 9.81 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.25 Total: -37.44 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.59 Total: -21.26 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 0.10 Total: -14.54 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.57 -5.80 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.830 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds