Wall clock time and date at job start Wed Apr 1 2020 04:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35912 * 117.00151 * 180.02562 * 5 4 3 7 7 C 1.38848 * 119.98243 * 359.71688 * 6 5 4 8 8 C 1.38240 * 120.23602 * 179.76665 * 7 6 5 9 9 C 1.38008 * 120.20875 * 0.51780 * 8 7 6 10 10 C 1.39566 * 119.96265 * 359.73773 * 9 8 7 11 11 C 1.47854 * 120.11424 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99899 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00558 * 0.02910 * 11 10 9 14 14 C 1.46498 * 120.00018 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47263 * 34.99997 * 14 13 11 16 16 C 1.50710 * 109.46798 * 154.99751 * 14 13 11 17 17 H 1.07999 * 119.99760 * 359.97438 * 16 14 13 18 18 C 1.37874 * 119.99529 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00725 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99711 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47352 * 119.99826 * 20 18 16 23 23 H 1.48497 * 109.47097 * 240.00207 * 20 18 16 24 24 C 1.52998 * 109.47053 * 274.99463 * 14 13 11 25 25 F 1.39903 * 109.47029 * 60.00525 * 24 14 13 26 26 F 1.39908 * 109.47078 * 180.02562 * 24 14 13 27 27 F 1.39895 * 109.47220 * 300.00392 * 24 14 13 28 28 C 1.38454 * 119.98389 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 32 32 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 33 33 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 34 34 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 35 35 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 36 36 H 1.08004 * 119.88169 * 0.02704 * 7 6 5 37 37 H 1.08010 * 119.89531 * 180.25887 * 8 7 6 38 38 H 1.08002 * 120.01699 * 179.72275 * 9 8 7 39 39 H 0.97000 * 119.99839 * 359.97438 * 13 11 10 40 40 H 0.96995 * 120.00362 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.10414 * 359.94968 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3020 0.3978 -1.3837 7 6 6.1824 0.7997 -0.3881 8 6 7.5431 0.6129 -0.5450 9 6 8.0363 0.0351 -1.6972 10 6 7.1595 -0.3673 -2.7057 11 6 7.6843 -0.9861 -3.9417 12 8 6.9188 -1.3354 -4.8189 13 7 9.0115 -1.1631 -4.0958 14 6 9.5314 -1.7767 -5.3203 15 1 8.9177 -1.4724 -6.1681 16 6 10.9529 -1.3283 -5.5425 17 1 11.4219 -0.6533 -4.8419 18 6 11.6545 -1.7797 -6.6401 19 7 11.0832 -2.6012 -7.4936 20 14 13.4168 -1.2244 -6.9152 21 1 13.8234 -0.3072 -5.8203 22 1 14.3127 -2.4086 -6.9279 23 1 13.5150 -0.5154 -8.2163 24 6 9.4927 -3.3001 -5.1834 25 9 8.1730 -3.7164 -4.9771 26 9 9.9897 -3.8862 -6.3525 27 9 10.2803 -3.6907 -4.0952 28 6 5.7861 -0.1824 -2.5438 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.8025 1.2562 0.5140 37 1 8.2227 0.9239 0.2348 38 1 9.1003 -0.1053 -1.8184 39 1 9.6225 -0.8841 -3.3960 40 1 11.5770 -2.9191 -8.2656 41 1 5.1027 -0.4917 -3.3208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:40 Heat of formation + Delta-G solvation = -247.311095 kcal Electronic energy + Delta-G solvation = -30528.680935 eV Core-core repulsion = 25573.294260 eV Total energy + Delta-G solvation = -4955.386674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.44878 -48.08641 -47.75290 -41.48004 -40.48066 -38.89098 -37.89991 -36.59267 -34.54909 -32.41256 -32.20137 -30.62993 -29.76924 -27.27116 -26.63679 -25.49526 -23.96567 -23.40261 -22.84326 -21.44806 -20.08635 -18.99024 -18.90113 -18.66793 -18.06465 -17.81936 -17.60688 -17.16626 -16.87309 -16.66725 -16.50193 -16.21879 -16.05317 -15.63221 -15.51572 -15.02994 -14.98977 -14.70857 -14.53027 -14.46333 -14.32228 -14.18461 -14.04825 -13.91122 -13.62595 -13.21557 -13.08050 -12.93243 -12.75551 -12.66425 -12.63615 -12.34508 -12.20724 -11.95055 -11.79531 -11.57209 -11.04474 -10.71139 -10.66597 -10.23779 -9.98787 -9.26847 -8.22101 -6.53599 -0.21682 0.40025 1.46930 1.47790 1.61227 1.79905 1.93886 2.29953 2.40296 2.51079 2.81243 2.84293 2.93901 3.58258 3.76417 3.77910 3.84169 3.96493 4.07304 4.12396 4.15243 4.18571 4.29703 4.36248 4.45154 4.51718 4.52943 4.57884 4.71796 4.86246 4.87840 4.90150 5.20695 5.30170 5.33158 5.36960 5.51285 5.62872 5.66684 6.19015 6.42703 6.50854 6.63145 7.13325 7.25320 8.71156 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002381 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.662680 B =11758.225304 C =12441.433853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.049 3.951 5 O -0.330 6.330 6 C 0.118 3.882 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.123 4.123 10 C -0.106 4.106 11 C 0.543 3.457 12 O -0.576 6.576 13 N -0.696 5.696 14 C 0.250 3.750 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.096 0.904 18 C 0.012 3.988 19 N -0.875 5.875 20 Si 0.987 3.013 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.414 3.586 25 F -0.221 7.221 26 F -0.149 7.149 27 F -0.201 7.201 28 C -0.121 4.121 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.170 0.830 37 H 0.176 0.824 38 H 0.147 0.853 39 H 0.415 0.585 40 H 0.269 0.731 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 11.550 20.148 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.025 4.025 5 O -0.245 6.245 6 C 0.072 3.928 7 C -0.192 4.192 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.109 4.109 11 C 0.332 3.668 12 O -0.457 6.457 13 N -0.347 5.347 14 C 0.143 3.857 15 H 0.065 0.935 16 C -0.596 4.596 17 H 0.114 0.886 18 C -0.193 4.193 19 N -0.510 5.510 20 Si 0.810 3.190 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.204 1.204 24 C 0.357 3.643 25 F -0.203 7.203 26 F -0.130 7.130 27 F -0.183 7.183 28 C -0.141 4.141 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.187 0.813 37 H 0.193 0.807 38 H 0.164 0.836 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.878 10.951 19.217 25.106 hybrid contribution 0.559 -0.371 -0.557 0.872 sum -11.319 10.580 18.660 24.254 Atomic orbital electron populations 1.22905 0.79431 1.03610 1.01063 1.87933 1.21586 1.28827 1.95671 1.22797 0.91050 0.85175 1.02894 1.23261 0.94480 0.99603 0.85161 1.86142 1.19525 1.77524 1.41264 1.18811 0.83453 0.96412 0.94101 1.21818 0.93938 1.03760 0.99704 1.21338 0.95195 0.95644 0.96902 1.21542 1.00098 0.99149 0.93413 1.19561 0.93983 1.02803 0.94535 1.18955 0.82421 0.78202 0.87243 1.90740 1.57959 1.52319 1.44678 1.45815 1.06705 1.61201 1.20962 1.19397 0.98085 0.82923 0.85268 0.93502 1.21250 0.95254 1.31789 1.11310 0.88584 1.26057 1.04092 0.93938 0.95186 1.70542 1.38876 1.29199 1.12333 0.85061 0.77095 0.78203 0.78656 1.17524 1.20693 1.20404 1.23298 0.71296 0.95912 0.73771 1.93067 1.39271 1.92825 1.95143 1.93382 1.86467 1.86565 1.46610 1.92984 1.75404 1.93091 1.56812 1.20356 0.94278 1.01828 0.97606 0.93604 0.89369 0.92014 0.87698 0.92267 0.90104 0.87313 0.81255 0.80712 0.83565 0.74697 0.92125 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.21 10.67 -144.35 -1.54 -9.75 16 3 C 0.06 0.73 6.32 71.98 0.45 1.19 16 4 C 0.05 0.69 5.12 71.98 0.37 1.05 16 5 O -0.33 -8.18 10.10 -87.93 -0.89 -9.07 16 6 C 0.12 3.04 6.68 22.47 0.15 3.19 16 7 C -0.17 -3.07 9.03 22.42 0.20 -2.87 16 8 C -0.07 -1.26 10.03 22.22 0.22 -1.04 16 9 C -0.12 -3.01 9.54 22.54 0.21 -2.80 16 10 C -0.11 -3.59 5.87 -20.10 -0.12 -3.71 16 11 C 0.54 23.68 7.31 86.79 0.63 24.31 16 12 O -0.58 -30.24 14.92 -3.89 -0.06 -30.29 16 13 N -0.70 -29.68 4.94 -448.96 -2.22 -31.90 16 14 C 0.25 12.95 2.21 44.25 0.10 13.05 16 15 H 0.05 2.80 7.58 -2.39 -0.02 2.78 16 16 C -0.56 -28.43 8.47 25.60 0.22 -28.21 16 17 H 0.10 4.43 7.74 -2.91 -0.02 4.41 16 18 C 0.01 0.65 5.20 84.65 0.44 1.09 16 19 N -0.88 -49.13 9.50 21.45 0.20 -48.93 16 20 Si 0.99 40.50 29.54 68.60 2.03 42.52 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 24 C 0.41 22.16 2.81 71.98 0.20 22.36 16 25 F -0.22 -12.03 15.68 44.97 0.70 -11.32 16 26 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 27 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 28 C -0.12 -4.06 9.53 22.63 0.22 -3.84 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.97 7.67 -2.39 -0.02 0.96 16 35 H 0.11 0.82 7.65 -2.39 -0.02 0.80 16 36 H 0.17 1.59 6.28 -2.91 -0.02 1.57 16 37 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.15 3.04 6.40 -2.91 -0.02 3.02 16 39 H 0.41 14.52 6.57 -92.71 -0.61 13.91 16 40 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.11 4.36 7.65 -2.91 -0.02 4.33 16 Total: -1.00 -75.50 360.23 4.61 -70.89 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.48 Total: 19.85 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 4.55 Total: 25.34 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.01 Total: -80.83 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -2.49 Total: -49.12 kcal Atomic # 9 Polarization: -30.70 SS G_CDS: 2.05 Total: -28.65 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -75.50 4.61 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.422 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds