Wall clock time and date at job start Wed Apr 1 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46904 * 2 1 4 4 C 1.35985 * 116.99983 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.99760 * 359.72617 * 4 3 2 6 6 C 1.38137 * 119.99943 * 179.76293 * 5 4 3 7 7 C 1.38695 * 119.99948 * 0.51101 * 6 5 4 8 8 O 1.35984 * 120.00270 * 179.71916 * 7 6 5 9 9 C 1.42902 * 116.99763 * 0.02562 * 8 7 6 10 10 C 1.50695 * 109.47176 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99956 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00218 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.47437 * 325.00262 * 13 12 10 15 15 C 1.50700 * 109.47163 * 205.00455 * 13 12 10 16 16 H 1.07993 * 119.99925 * 274.94317 * 15 13 12 17 17 C 1.37878 * 119.99997 * 94.93994 * 15 13 12 18 18 N 1.31508 * 119.99947 * 184.87470 * 17 15 13 19 19 Si 1.86803 * 120.00006 * 4.88300 * 17 15 13 20 20 H 1.48500 * 109.47109 * 84.80614 * 19 17 15 21 21 H 1.48502 * 109.46715 * 204.80450 * 19 17 15 22 22 H 1.48493 * 109.46815 * 324.80510 * 19 17 15 23 23 C 1.52994 * 109.47220 * 85.00327 * 13 12 10 24 24 F 1.39902 * 109.47151 * 54.93474 * 23 13 12 25 25 F 1.39905 * 109.47367 * 174.93820 * 23 13 12 26 26 F 1.39903 * 109.47040 * 294.93924 * 23 13 12 27 27 C 1.38699 * 119.99625 * 359.74177 * 7 6 5 28 28 C 1.38128 * 120.00414 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47463 * 299.99769 * 1 2 3 31 31 H 1.09004 * 109.47380 * 59.99843 * 1 2 3 32 32 H 1.08999 * 109.46915 * 239.99670 * 2 1 3 33 33 H 1.09007 * 109.46787 * 119.99717 * 2 1 3 34 34 H 1.08004 * 120.00222 * 359.97438 * 5 4 3 35 35 H 1.07997 * 119.99967 * 180.22847 * 6 5 4 36 36 H 1.09002 * 109.46777 * 299.99950 * 9 8 7 37 37 H 1.09004 * 109.46847 * 59.99712 * 9 8 7 38 38 H 0.96999 * 119.99971 * 0.02562 * 12 10 9 39 39 H 0.97001 * 120.00418 * 180.02562 * 18 17 15 40 40 H 1.08009 * 119.99703 * 179.97438 * 27 7 6 41 41 H 1.07997 * 120.00075 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1993 0.4256 0.0068 6 6 5.5687 0.6065 0.0024 7 6 6.0989 1.8882 0.0024 8 8 7.4470 2.0664 0.0039 9 6 8.2570 0.8891 0.0047 10 6 9.7122 1.2805 0.0057 11 8 10.0249 2.4523 0.0061 12 7 10.6662 0.3285 0.0071 13 6 12.0808 0.7091 0.0086 14 1 12.2137 1.6163 -0.5811 15 6 12.9011 -0.4041 -0.5907 16 1 13.2294 -1.2262 0.0279 17 6 13.2325 -0.3729 -1.9287 18 7 13.8652 -1.3891 -2.4732 19 14 12.7829 1.1128 -2.9679 20 1 13.8334 2.1527 -2.8255 21 1 12.6781 0.7069 -4.3925 22 1 11.4799 1.6598 -2.5119 23 6 12.5391 0.9634 1.4459 24 9 12.2621 -0.1619 2.2297 25 9 13.9155 1.2138 1.4593 26 9 11.8585 2.0709 1.9633 27 6 5.2539 2.9881 0.0015 28 6 3.8845 2.8071 0.0010 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.7865 -0.5725 0.0117 35 1 6.2266 -0.2499 0.0035 36 1 8.0386 0.2985 0.8945 37 1 8.0405 0.2985 -0.8855 38 1 10.4161 -0.6087 0.0071 39 1 14.0987 -1.3671 -3.4145 40 1 5.6667 3.9861 0.0019 41 1 3.2267 3.6636 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:45 Heat of formation + Delta-G solvation = -244.126893 kcal Electronic energy + Delta-G solvation = -30230.049858 eV Core-core repulsion = 25274.801261 eV Total energy + Delta-G solvation = -4955.248597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.10753 -46.63219 -46.58529 -40.62284 -39.56914 -38.55904 -36.48765 -34.84385 -32.69056 -32.15044 -31.33356 -30.18970 -28.91483 -27.24563 -25.02308 -24.40336 -22.68912 -21.80572 -21.39540 -20.10228 -18.72670 -18.32613 -17.95059 -17.56100 -17.12559 -16.69768 -16.53075 -16.41373 -16.08358 -15.85934 -15.28193 -14.97448 -14.35707 -14.01297 -13.89968 -13.72554 -13.62766 -13.52371 -13.44869 -13.29048 -13.07242 -12.99200 -12.80243 -12.76275 -12.71860 -12.60883 -12.39461 -12.25248 -11.86748 -11.83022 -11.37025 -11.20308 -10.89870 -10.77966 -10.50967 -10.20893 -9.90280 -9.47616 -9.26358 -9.04216 -8.54942 -7.87536 -6.61393 -4.77136 1.06949 1.31223 2.73690 2.95273 2.96524 3.08742 3.16282 3.24898 3.56698 3.79581 3.94422 4.03538 4.47249 4.54262 4.58894 4.68243 4.77275 4.84358 4.87452 4.94470 5.03696 5.11202 5.11986 5.15193 5.20507 5.29099 5.34730 5.39235 5.47870 5.61858 5.70188 5.86896 6.09043 6.15897 6.20687 6.39670 6.79867 6.98459 7.12137 7.35804 7.75655 8.15702 8.43857 8.67867 8.94122 10.46634 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002394 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.914430 B =11693.686898 C =12239.907930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.087 3.913 5 C -0.167 4.167 6 C -0.172 4.172 7 C 0.100 3.900 8 O -0.287 6.287 9 C 0.039 3.961 10 C 0.501 3.499 11 O -0.520 6.520 12 N -0.709 5.709 13 C 0.205 3.795 14 H 0.091 0.909 15 C -0.536 4.536 16 H 0.095 0.905 17 C 0.100 3.900 18 N -0.856 5.856 19 Si 0.867 3.133 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.254 1.254 23 C 0.438 3.562 24 F -0.192 7.192 25 F -0.180 7.180 26 F -0.195 7.195 27 C -0.110 4.110 28 C -0.111 4.111 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.402 0.598 39 H 0.277 0.723 40 H 0.140 0.860 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.989 0.437 3.526 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.042 3.958 5 C -0.186 4.186 6 C -0.191 4.191 7 C 0.054 3.946 8 O -0.199 6.199 9 C -0.040 4.040 10 C 0.285 3.715 11 O -0.396 6.396 12 N -0.363 5.363 13 C 0.102 3.898 14 H 0.109 0.891 15 C -0.574 4.574 16 H 0.113 0.887 17 C -0.110 4.110 18 N -0.488 5.488 19 Si 0.691 3.309 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.178 1.178 23 C 0.382 3.618 24 F -0.174 7.174 25 F -0.162 7.162 26 F -0.177 7.177 27 C -0.128 4.128 28 C -0.130 4.130 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.691 1.520 3.380 21.021 hybrid contribution -0.123 -0.390 -0.359 0.544 sum -20.815 1.131 3.021 21.063 Atomic orbital electron populations 1.21773 0.92820 1.02812 1.03491 1.22749 0.95804 0.82222 1.01326 1.86061 1.18920 1.28972 1.89364 1.18841 0.82312 0.94027 1.00584 1.21011 0.93414 0.98164 1.06017 1.21110 0.95696 0.96276 1.06000 1.19012 0.83081 0.93667 0.98818 1.86207 1.13380 1.31751 1.88599 1.22630 0.90096 0.87781 1.03462 1.20263 0.86598 0.87067 0.77550 1.90718 1.82864 1.17953 1.48034 1.47411 1.06026 1.09389 1.73471 1.20034 0.80871 1.01629 0.87290 0.89121 1.20723 1.33209 1.07396 0.96053 0.88733 1.25008 0.92695 0.95975 0.97349 1.69848 1.35834 1.29453 1.13709 0.86951 0.81074 0.83035 0.79818 1.18868 1.20397 1.17779 1.21687 0.75258 0.73015 0.91852 1.93068 1.93547 1.52857 1.77922 1.93114 1.32000 1.94080 1.97000 1.93156 1.80048 1.55065 1.89386 1.20281 0.91123 0.98282 1.03157 1.20213 0.94007 0.95046 1.03690 0.90427 0.91546 0.91536 0.92132 0.92141 0.85296 0.84924 0.89227 0.89197 0.76229 0.91315 0.84193 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.38 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.27 10.14 -19.69 -0.20 -3.47 16 4 C 0.09 0.96 6.69 -39.24 -0.26 0.70 16 5 C -0.17 -1.73 9.03 -39.45 -0.36 -2.09 16 6 C -0.17 -1.96 9.03 -39.45 -0.36 -2.31 16 7 C 0.10 1.35 6.69 -39.24 -0.26 1.09 16 8 O -0.29 -4.63 9.67 -39.60 -0.38 -5.01 16 9 C 0.04 0.56 5.22 36.00 0.19 0.75 16 10 C 0.50 9.60 7.56 -10.99 -0.08 9.51 16 11 O -0.52 -12.08 15.07 -14.35 -0.22 -12.30 16 12 N -0.71 -13.62 4.91 -54.94 -0.27 -13.89 16 13 C 0.20 4.61 1.71 -69.09 -0.12 4.49 16 14 H 0.09 2.19 4.74 -51.92 -0.25 1.94 16 15 C -0.54 -13.27 8.52 -34.44 -0.29 -13.56 16 16 H 0.09 2.52 8.00 -52.49 -0.42 2.10 16 17 C 0.10 2.55 5.47 -17.82 -0.10 2.46 16 18 N -0.86 -22.90 13.96 55.43 0.77 -22.13 16 19 Si 0.87 19.74 26.99 -169.99 -4.59 15.15 16 20 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.25 -5.88 6.82 56.52 0.39 -5.49 16 23 C 0.44 9.62 2.83 37.15 0.11 9.72 16 24 F -0.19 -4.02 16.93 2.25 0.04 -3.98 16 25 F -0.18 -4.06 16.89 2.25 0.04 -4.02 16 26 F -0.19 -4.31 15.83 2.25 0.04 -4.27 16 27 C -0.11 -1.34 9.98 -39.45 -0.39 -1.73 16 28 C -0.11 -1.22 9.98 -39.45 -0.39 -1.61 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 33 H 0.06 0.38 7.65 -51.92 -0.40 -0.02 16 34 H 0.13 1.03 6.29 -52.48 -0.33 0.70 16 35 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 36 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 37 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 38 H 0.40 6.59 8.59 -40.82 -0.35 6.24 16 39 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -30.81 363.28 -5.57 -36.38 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.53 Total: 4.49 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.74 Total: 7.57 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.50 Total: -36.02 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.80 Total: -20.78 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 0.11 Total: -12.27 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.59 Total: 15.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.81 -5.57 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.747 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds