Wall clock time and date at job start Wed Apr 1 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46904 * 2 1 4 4 C 1.35985 * 116.99983 * 179.97438 * 3 2 1 5 5 C 1.38696 * 119.99760 * 359.72617 * 4 3 2 6 6 C 1.38137 * 119.99943 * 179.76293 * 5 4 3 7 7 C 1.38695 * 119.99948 * 0.51101 * 6 5 4 8 8 O 1.35984 * 120.00270 * 179.71916 * 7 6 5 9 9 C 1.42902 * 116.99763 * 0.02562 * 8 7 6 10 10 C 1.50695 * 109.47176 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99956 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00218 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.47437 * 325.00262 * 13 12 10 15 15 C 1.50700 * 109.47163 * 205.00455 * 13 12 10 16 16 H 1.07993 * 119.99925 * 274.94317 * 15 13 12 17 17 C 1.37878 * 119.99997 * 94.93994 * 15 13 12 18 18 N 1.31508 * 119.99947 * 184.87470 * 17 15 13 19 19 Si 1.86803 * 120.00006 * 4.88300 * 17 15 13 20 20 H 1.48500 * 109.47109 * 84.80614 * 19 17 15 21 21 H 1.48502 * 109.46715 * 204.80450 * 19 17 15 22 22 H 1.48493 * 109.46815 * 324.80510 * 19 17 15 23 23 C 1.52994 * 109.47220 * 85.00327 * 13 12 10 24 24 F 1.39902 * 109.47151 * 54.93474 * 23 13 12 25 25 F 1.39905 * 109.47367 * 174.93820 * 23 13 12 26 26 F 1.39903 * 109.47040 * 294.93924 * 23 13 12 27 27 C 1.38699 * 119.99625 * 359.74177 * 7 6 5 28 28 C 1.38128 * 120.00414 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47463 * 299.99769 * 1 2 3 31 31 H 1.09004 * 109.47380 * 59.99843 * 1 2 3 32 32 H 1.08999 * 109.46915 * 239.99670 * 2 1 3 33 33 H 1.09007 * 109.46787 * 119.99717 * 2 1 3 34 34 H 1.08004 * 120.00222 * 359.97438 * 5 4 3 35 35 H 1.07997 * 119.99967 * 180.22847 * 6 5 4 36 36 H 1.09002 * 109.46777 * 299.99950 * 9 8 7 37 37 H 1.09004 * 109.46847 * 59.99712 * 9 8 7 38 38 H 0.96999 * 119.99971 * 0.02562 * 12 10 9 39 39 H 0.97001 * 120.00418 * 180.02562 * 18 17 15 40 40 H 1.08009 * 119.99703 * 179.97438 * 27 7 6 41 41 H 1.07997 * 120.00075 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1993 0.4256 0.0068 6 6 5.5687 0.6065 0.0024 7 6 6.0989 1.8882 0.0024 8 8 7.4470 2.0664 0.0039 9 6 8.2570 0.8891 0.0047 10 6 9.7122 1.2805 0.0057 11 8 10.0249 2.4523 0.0061 12 7 10.6662 0.3285 0.0071 13 6 12.0808 0.7091 0.0086 14 1 12.2137 1.6163 -0.5811 15 6 12.9011 -0.4041 -0.5907 16 1 13.2294 -1.2262 0.0279 17 6 13.2325 -0.3729 -1.9287 18 7 13.8652 -1.3891 -2.4732 19 14 12.7829 1.1128 -2.9679 20 1 13.8334 2.1527 -2.8255 21 1 12.6781 0.7069 -4.3925 22 1 11.4799 1.6598 -2.5119 23 6 12.5391 0.9634 1.4459 24 9 12.2621 -0.1619 2.2297 25 9 13.9155 1.2138 1.4593 26 9 11.8585 2.0709 1.9633 27 6 5.2539 2.9881 0.0015 28 6 3.8845 2.8071 0.0010 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.7865 -0.5725 0.0117 35 1 6.2266 -0.2499 0.0035 36 1 8.0386 0.2985 0.8945 37 1 8.0405 0.2985 -0.8855 38 1 10.4161 -0.6087 0.0071 39 1 14.0987 -1.3671 -3.4145 40 1 5.6667 3.9861 0.0019 41 1 3.2267 3.6636 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:45 Heat of formation + Delta-G solvation = -263.176375 kcal Electronic energy + Delta-G solvation = -30230.875905 eV Core-core repulsion = 25274.801261 eV Total energy + Delta-G solvation = -4956.074644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.89243 -48.40443 -48.37844 -41.55899 -40.76345 -39.73126 -37.41199 -36.58326 -34.55919 -32.71428 -32.23687 -31.64104 -29.96297 -28.44364 -26.90693 -25.05712 -23.79141 -22.91953 -22.54462 -21.65097 -20.10491 -19.58668 -19.35181 -18.85807 -18.74638 -18.44811 -18.03449 -17.31873 -17.07075 -16.95947 -16.84784 -15.88531 -15.78162 -15.38028 -15.31146 -15.25210 -14.94244 -14.83979 -14.71527 -14.58483 -14.53070 -14.52119 -14.42273 -14.19057 -14.04886 -13.74379 -13.34243 -13.16334 -13.13777 -13.01302 -12.60752 -12.50039 -12.08045 -12.01219 -11.87452 -11.67228 -11.29779 -11.12555 -10.90283 -10.22160 -10.09121 -8.75264 -8.57486 -6.75793 0.24500 0.43718 1.23089 1.31992 1.40464 1.44897 1.53280 2.07200 2.14875 2.29026 2.55593 2.71621 2.93229 3.24829 3.31916 3.43705 3.70988 3.82146 3.85564 4.01836 4.09246 4.11635 4.17365 4.18872 4.37346 4.39702 4.44305 4.48062 4.76749 4.91030 4.93728 4.97082 5.06148 5.20195 5.28589 5.33699 5.35526 5.56630 5.85096 6.26347 6.42248 6.50505 6.62649 6.97512 7.19150 8.54565 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002394 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.914430 B =11693.686898 C =12239.907930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.083 3.917 5 C -0.167 4.167 6 C -0.170 4.170 7 C 0.073 3.927 8 O -0.318 6.318 9 C 0.047 3.953 10 C 0.498 3.502 11 O -0.565 6.565 12 N -0.703 5.703 13 C 0.211 3.789 14 H 0.077 0.923 15 C -0.535 4.535 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.893 5.893 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.260 1.260 23 C 0.439 3.561 24 F -0.185 7.185 25 F -0.185 7.185 26 F -0.194 7.194 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.418 0.582 39 H 0.281 0.719 40 H 0.139 0.861 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.285 -0.451 3.520 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.038 3.962 5 C -0.185 4.185 6 C -0.188 4.188 7 C 0.029 3.971 8 O -0.232 6.232 9 C -0.031 4.031 10 C 0.284 3.716 11 O -0.443 6.443 12 N -0.358 5.358 13 C 0.106 3.894 14 H 0.094 0.906 15 C -0.572 4.572 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.185 1.185 23 C 0.383 3.617 24 F -0.166 7.166 25 F -0.166 7.166 26 F -0.176 7.176 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.157 0.843 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.020 0.599 3.377 23.274 hybrid contribution 0.462 -0.125 -0.267 0.548 sum -22.558 0.474 3.110 22.777 Atomic orbital electron populations 1.21804 0.91655 1.04088 1.03135 1.23051 0.96814 0.80933 1.02264 1.86062 1.18393 1.31084 1.89144 1.19036 0.82969 0.94273 0.99899 1.21302 0.92987 0.99230 1.05017 1.21351 0.96455 0.95996 1.05016 1.19219 0.82022 0.94985 1.00906 1.86137 1.14819 1.32751 1.89476 1.22607 0.86324 0.87722 1.06488 1.21021 0.88560 0.86075 0.75906 1.90699 1.83896 1.19830 1.49905 1.46923 1.04872 1.10532 1.73475 1.19741 0.82267 1.00140 0.87270 0.90556 1.20631 1.33749 1.07068 0.95777 0.91156 1.25499 0.92721 0.97578 0.98256 1.69906 1.37541 1.30966 1.14355 0.86196 0.80243 0.80495 0.79141 1.19076 1.19304 1.18465 1.21592 0.75045 0.73209 0.91819 1.93080 1.93465 1.52415 1.77661 1.93104 1.32391 1.94129 1.97025 1.93159 1.80007 1.55088 1.89332 1.20412 0.91689 0.98328 1.03557 1.20387 0.93704 0.95970 1.03515 0.88328 0.91888 0.91923 0.91174 0.91104 0.82719 0.82773 0.85821 0.86202 0.74384 0.90888 0.84314 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 71.98 0.74 -0.49 16 2 C 0.04 0.50 5.46 71.98 0.39 0.90 16 3 O -0.33 -6.15 10.14 -93.39 -0.95 -7.09 16 4 C 0.08 1.67 6.69 22.49 0.15 1.82 16 5 C -0.17 -2.97 9.03 22.36 0.20 -2.77 16 6 C -0.17 -3.37 9.03 22.35 0.20 -3.17 16 7 C 0.07 1.87 6.69 22.49 0.15 2.02 16 8 O -0.32 -9.85 9.67 -74.33 -0.72 -10.57 16 9 C 0.05 1.21 5.22 71.23 0.37 1.59 16 10 C 0.50 18.35 7.56 87.66 0.66 19.02 16 11 O -0.56 -26.05 15.07 16.00 0.24 -25.81 16 12 N -0.70 -26.06 4.91 -446.11 -2.19 -28.25 16 13 C 0.21 9.38 1.71 44.24 0.08 9.46 16 14 H 0.08 3.67 4.74 -2.38 -0.01 3.66 16 15 C -0.53 -26.45 8.52 25.60 0.22 -26.23 16 16 H 0.07 3.79 8.00 -2.91 -0.02 3.77 16 17 C 0.07 3.38 5.47 84.66 0.46 3.84 16 18 N -0.89 -47.92 13.96 21.45 0.30 -47.62 16 19 Si 0.92 40.55 26.99 68.60 1.85 42.40 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.26 -11.73 6.82 99.48 0.68 -11.05 16 23 C 0.44 19.07 2.83 71.98 0.20 19.28 16 24 F -0.18 -7.54 16.93 44.97 0.76 -6.78 16 25 F -0.18 -8.28 16.89 44.97 0.76 -7.52 16 26 F -0.19 -8.48 15.83 44.97 0.71 -7.76 16 27 C -0.12 -2.89 9.98 22.35 0.22 -2.67 16 28 C -0.12 -2.44 9.98 22.35 0.22 -2.22 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 33 H 0.07 0.67 7.65 -2.38 -0.02 0.65 16 34 H 0.16 1.86 6.29 -2.91 -0.02 1.85 16 35 H 0.15 2.28 6.29 -2.91 -0.02 2.26 16 36 H 0.12 2.37 7.66 -2.39 -0.02 2.36 16 37 H 0.12 2.41 7.66 -2.39 -0.02 2.39 16 38 H 0.42 12.89 8.59 -92.71 -0.80 12.09 16 39 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -66.63 363.28 5.32 -61.30 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.28 Total: 17.33 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 4.28 Total: 20.37 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.89 Total: -75.88 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.42 Total: -43.47 kcal Atomic # 9 Polarization: -24.30 SS G_CDS: 2.23 Total: -22.07 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.85 Total: 42.40 kcal Total: -66.63 5.32 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.876 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds