Wall clock time and date at job start Wed Apr 1 2020 04:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35889 * 117.00142 * 2 1 4 4 C 1.38732 * 120.05545 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94694 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05082 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94202 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47004 * 89.99980 * 7 6 5 9 9 C 1.42901 * 113.99898 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47052 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00063 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99847 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00111 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46891 * 325.00262 * 13 12 10 15 15 C 1.50697 * 109.47650 * 205.00149 * 13 12 10 16 16 H 1.08002 * 119.99362 * 359.97438 * 15 13 12 17 17 C 1.37867 * 120.00258 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00057 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47191 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46922 * 120.00214 * 19 17 15 22 22 H 1.48498 * 109.46996 * 239.99688 * 19 17 15 23 23 C 1.53006 * 109.46883 * 84.99828 * 13 12 10 24 24 F 1.39900 * 109.46764 * 60.00430 * 23 13 12 25 25 F 1.39895 * 109.46931 * 180.02562 * 23 13 12 26 26 F 1.39897 * 109.47129 * 300.00452 * 23 13 12 27 27 C 1.38266 * 120.11682 * 0.24352 * 6 5 4 28 28 C 1.38146 * 120.04919 * 359.46273 * 27 6 5 29 29 H 1.09002 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46900 * 300.00222 * 1 2 3 31 31 H 1.09002 * 109.46799 * 60.00057 * 1 2 3 32 32 H 1.07992 * 120.03073 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97608 * 179.97438 * 5 4 3 34 34 H 1.08990 * 109.47123 * 329.99813 * 7 6 5 35 35 H 1.08994 * 109.47262 * 209.99307 * 7 6 5 36 36 H 1.08999 * 109.47110 * 60.00244 * 9 8 7 37 37 H 1.08988 * 109.47193 * 299.99793 * 9 8 7 38 38 H 0.97003 * 120.00265 * 0.02562 * 12 10 9 39 39 H 0.97006 * 120.00645 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.97763 * 179.70322 * 27 6 5 41 41 H 1.08009 * 120.02609 * 180.25064 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 8 4.2030 5.4437 -1.3442 9 6 4.8493 6.7133 -1.4559 10 6 5.0268 7.0602 -2.9117 11 8 4.6386 6.2953 -3.7690 12 7 5.6179 8.2200 -3.2608 13 6 5.7911 8.5570 -4.6760 14 1 5.9903 7.6483 -5.2441 15 6 6.9498 9.5085 -4.8278 16 1 7.5018 9.8303 -3.9570 17 6 7.3045 9.9689 -6.0779 18 7 6.6320 9.5774 -7.1381 19 14 8.7404 11.1489 -6.2660 20 1 9.3259 11.4328 -4.9311 21 1 9.7731 10.5366 -7.1400 22 1 8.2633 12.4158 -6.8763 23 6 4.5157 9.2183 -5.2024 24 9 4.2601 10.3846 -4.4732 25 9 4.6808 9.5396 -6.5539 26 9 3.4401 8.3350 -5.0615 27 6 1.9212 3.6047 0.0067 28 6 1.2916 2.3751 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0209 0.3799 0.0014 33 1 5.1347 2.5748 0.0019 34 1 4.9439 4.9377 0.5169 35 1 3.3581 5.7458 0.5167 36 1 5.8249 6.6682 -0.9720 37 1 4.2387 7.4756 -0.9723 38 1 5.9295 8.8313 -2.5750 39 1 6.8818 9.9010 -8.0178 40 1 1.3343 4.5113 0.0119 41 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:59 Heat of formation + Delta-G solvation = -225.070336 kcal Electronic energy + Delta-G solvation = -30140.005720 eV Core-core repulsion = 25185.583478 eV Total energy + Delta-G solvation = -4954.422243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.35306 -46.00783 -45.61631 -40.36688 -39.19539 -38.14896 -36.85307 -34.62124 -32.60726 -31.61689 -31.20347 -29.29822 -27.97469 -26.87384 -25.17324 -24.54604 -22.86349 -21.62228 -21.40244 -19.93111 -18.41307 -17.68281 -16.99946 -16.73928 -16.72848 -16.53285 -16.50553 -16.00185 -15.88658 -15.61503 -15.28192 -14.89501 -14.62512 -14.29489 -13.98682 -13.73092 -13.45072 -13.16314 -12.92914 -12.89444 -12.57870 -12.41287 -12.36178 -12.27112 -12.20889 -12.01824 -11.93607 -11.80820 -11.50409 -11.19582 -11.15388 -11.01696 -10.88469 -10.78603 -10.42116 -9.69709 -9.66878 -9.18295 -9.16827 -8.74951 -8.37162 -8.29115 -6.25327 -4.49651 1.12552 1.18201 2.99526 3.13815 3.16043 3.18878 3.24805 3.27976 3.66785 4.16936 4.34270 4.53369 4.55646 4.65138 4.77853 4.83601 4.85255 4.91603 5.02313 5.09171 5.13484 5.16241 5.29916 5.30930 5.34172 5.40431 5.50857 5.83618 5.83873 5.86657 6.03651 6.13716 6.20406 6.43999 6.53476 6.89357 7.03481 7.13348 7.19074 7.45398 7.61164 8.28481 8.48463 8.87147 9.18339 10.66322 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.002082 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.788261 B =13447.674310 C =13848.665676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.155 4.155 5 C -0.056 4.056 6 C -0.124 4.124 7 C 0.104 3.896 8 O -0.355 6.355 9 C 0.045 3.955 10 C 0.504 3.496 11 O -0.514 6.514 12 N -0.712 5.712 13 C 0.246 3.754 14 H 0.086 0.914 15 C -0.552 4.552 16 H 0.079 0.921 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.417 3.583 24 F -0.210 7.210 25 F -0.136 7.136 26 F -0.217 7.217 27 C -0.055 4.055 28 C -0.211 4.211 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.268 0.732 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -10.879 16.993 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.174 4.174 5 C -0.074 4.074 6 C -0.124 4.124 7 C 0.028 3.972 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.288 3.712 11 O -0.388 6.388 12 N -0.364 5.364 13 C 0.141 3.859 14 H 0.103 0.897 15 C -0.589 4.589 16 H 0.097 0.903 17 C -0.145 4.145 18 N -0.472 5.472 19 Si 0.743 3.257 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.206 1.206 23 C 0.360 3.640 24 F -0.191 7.191 25 F -0.118 7.118 26 F -0.199 7.199 27 C -0.074 4.074 28 C -0.230 4.230 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.671 -11.734 15.957 21.241 hybrid contribution 0.304 1.425 0.237 1.476 sum -7.367 -10.310 16.194 20.562 Atomic orbital electron populations 1.23065 0.78350 1.03923 1.01489 1.86062 1.21455 1.27050 1.88662 1.19078 0.92436 0.84108 0.95910 1.20407 0.91346 0.98658 1.06964 1.20895 1.00046 0.90842 0.95626 1.19475 0.93567 0.94171 1.05200 1.21289 0.98783 0.92656 0.84505 1.88134 1.79642 1.34594 1.24934 1.22248 0.98352 0.87190 0.95750 1.20170 0.78676 0.82250 0.90095 1.90736 1.47588 1.49054 1.51424 1.45968 1.60483 1.20234 1.09666 1.19734 0.89654 0.98303 0.78218 0.89668 1.20902 1.14084 1.29408 0.94474 0.90342 1.25098 0.97195 0.96689 0.95524 1.70413 1.36043 1.41694 0.99045 0.86145 0.81071 0.80012 0.78508 1.19397 1.20550 1.20581 1.23133 0.86408 0.76419 0.78009 1.92985 1.95218 1.52409 1.78537 1.93404 1.94221 1.92627 1.31505 1.93077 1.61248 1.69669 1.95914 1.20865 0.93858 0.97245 0.95399 1.21207 1.00062 0.92248 1.09500 0.88252 0.92645 0.92474 0.85041 0.85026 0.92298 0.92413 0.90411 0.90557 0.76762 0.92128 0.85509 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.30 10.50 -19.39 -0.20 -3.50 16 3 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 4 C -0.16 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.06 -0.62 9.69 -39.60 -0.38 -1.00 16 6 C -0.12 -1.45 5.51 -104.60 -0.58 -2.03 16 7 C 0.10 1.16 6.06 36.01 0.22 1.38 16 8 O -0.35 -5.58 9.86 -55.14 -0.54 -6.12 16 9 C 0.04 0.63 6.42 36.01 0.23 0.86 16 10 C 0.50 10.02 7.44 -10.99 -0.08 9.93 16 11 O -0.51 -12.71 15.07 -14.35 -0.22 -12.92 16 12 N -0.71 -14.24 4.99 -54.93 -0.27 -14.52 16 13 C 0.25 6.10 2.21 -69.08 -0.15 5.95 16 14 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 15 C -0.55 -13.89 8.46 -34.45 -0.29 -14.18 16 16 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 17 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 18 N -0.84 -22.98 9.50 55.43 0.53 -22.45 16 19 Si 0.92 19.91 29.54 -169.99 -5.02 14.89 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 C 0.42 10.72 2.81 37.16 0.10 10.83 16 24 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 25 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 26 F -0.22 -5.62 15.68 2.25 0.04 -5.58 16 27 C -0.06 -0.61 9.69 -39.60 -0.38 -1.00 16 28 C -0.21 -2.20 9.04 -39.43 -0.36 -2.56 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.87 8.14 -51.94 -0.42 0.45 16 38 H 0.40 6.59 8.54 -40.82 -0.35 6.24 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -33.56 363.88 -6.36 -39.92 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.79 Total: 3.67 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.43 Total: 9.99 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.25 Total: -36.96 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.96 Total: -22.54 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 0.10 Total: -14.45 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.56 -6.36 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.147 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds