Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35889 * 117.00142 * 2 1 4 4 C 1.38732 * 120.05545 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94694 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05082 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94202 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47004 * 89.99980 * 7 6 5 9 9 C 1.42901 * 113.99898 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47052 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00063 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99847 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00111 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46891 * 325.00262 * 13 12 10 15 15 C 1.50697 * 109.47650 * 205.00149 * 13 12 10 16 16 H 1.08002 * 119.99362 * 359.97438 * 15 13 12 17 17 C 1.37867 * 120.00258 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00057 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47191 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46922 * 120.00214 * 19 17 15 22 22 H 1.48498 * 109.46996 * 239.99688 * 19 17 15 23 23 C 1.53006 * 109.46883 * 84.99828 * 13 12 10 24 24 F 1.39900 * 109.46764 * 60.00430 * 23 13 12 25 25 F 1.39895 * 109.46931 * 180.02562 * 23 13 12 26 26 F 1.39897 * 109.47129 * 300.00452 * 23 13 12 27 27 C 1.38266 * 120.11682 * 0.24352 * 6 5 4 28 28 C 1.38146 * 120.04919 * 359.46273 * 27 6 5 29 29 H 1.09002 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46900 * 300.00222 * 1 2 3 31 31 H 1.09002 * 109.46799 * 60.00057 * 1 2 3 32 32 H 1.07992 * 120.03073 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97608 * 179.97438 * 5 4 3 34 34 H 1.08990 * 109.47123 * 329.99813 * 7 6 5 35 35 H 1.08994 * 109.47262 * 209.99307 * 7 6 5 36 36 H 1.08999 * 109.47110 * 60.00244 * 9 8 7 37 37 H 1.08988 * 109.47193 * 299.99793 * 9 8 7 38 38 H 0.97003 * 120.00265 * 0.02562 * 12 10 9 39 39 H 0.97006 * 120.00645 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.97763 * 179.70322 * 27 6 5 41 41 H 1.08009 * 120.02609 * 180.25064 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 8 4.2030 5.4437 -1.3442 9 6 4.8493 6.7133 -1.4559 10 6 5.0268 7.0602 -2.9117 11 8 4.6386 6.2953 -3.7690 12 7 5.6179 8.2200 -3.2608 13 6 5.7911 8.5570 -4.6760 14 1 5.9903 7.6483 -5.2441 15 6 6.9498 9.5085 -4.8278 16 1 7.5018 9.8303 -3.9570 17 6 7.3045 9.9689 -6.0779 18 7 6.6320 9.5774 -7.1381 19 14 8.7404 11.1489 -6.2660 20 1 9.3259 11.4328 -4.9311 21 1 9.7731 10.5366 -7.1400 22 1 8.2633 12.4158 -6.8763 23 6 4.5157 9.2183 -5.2024 24 9 4.2601 10.3846 -4.4732 25 9 4.6808 9.5396 -6.5539 26 9 3.4401 8.3350 -5.0615 27 6 1.9212 3.6047 0.0067 28 6 1.2916 2.3751 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0209 0.3799 0.0014 33 1 5.1347 2.5748 0.0019 34 1 4.9439 4.9377 0.5169 35 1 3.3581 5.7458 0.5167 36 1 5.8249 6.6682 -0.9720 37 1 4.2387 7.4756 -0.9723 38 1 5.9295 8.8313 -2.5750 39 1 6.8818 9.9010 -8.0178 40 1 1.3343 4.5113 0.0119 41 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = -246.931191 kcal Electronic energy + Delta-G solvation = -30140.953678 eV Core-core repulsion = 25185.583478 eV Total energy + Delta-G solvation = -4955.370200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.42584 -48.06079 -47.73538 -41.13159 -40.66876 -39.09735 -37.84509 -36.44148 -34.47713 -32.46077 -32.00536 -30.92593 -28.77804 -28.03743 -26.57977 -26.01340 -23.63818 -23.48253 -22.20542 -21.60411 -19.44834 -19.13445 -18.89653 -18.68140 -18.36369 -17.90286 -17.50230 -17.17235 -16.81551 -16.68773 -16.64347 -16.49604 -15.79886 -15.43559 -15.14007 -14.97333 -14.89813 -14.61156 -14.50377 -14.45563 -14.31656 -14.27506 -14.04202 -13.89329 -13.65612 -13.34665 -13.12645 -12.98087 -12.76928 -12.69088 -12.64655 -12.26015 -12.18921 -11.90687 -11.75500 -11.55216 -10.78703 -10.70167 -10.64867 -10.07453 -9.97660 -9.17343 -8.21042 -6.52132 0.30213 0.37832 1.46847 1.48034 1.61186 1.64374 1.92030 2.35128 2.37427 2.51458 2.69361 2.94344 3.28604 3.68895 3.80331 3.81508 3.88819 3.92575 4.05454 4.18167 4.19925 4.28984 4.34134 4.37519 4.38427 4.41757 4.53895 4.62724 4.73004 4.75025 4.90844 5.06628 5.24983 5.34322 5.39905 5.54091 5.63190 5.65174 5.77502 6.13699 6.41044 6.53415 6.74728 7.17526 7.37885 8.71996 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.002082 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.788261 B =13447.674310 C =13848.665676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.170 4.170 5 C -0.065 4.065 6 C -0.144 4.144 7 C 0.102 3.898 8 O -0.394 6.394 9 C 0.056 3.944 10 C 0.496 3.504 11 O -0.572 6.572 12 N -0.702 5.702 13 C 0.252 3.748 14 H 0.044 0.956 15 C -0.558 4.558 16 H 0.097 0.903 17 C 0.011 3.989 18 N -0.877 5.877 19 Si 0.985 3.015 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.283 1.283 23 C 0.413 3.587 24 F -0.201 7.201 25 F -0.151 7.151 26 F -0.221 7.221 27 C -0.067 4.067 28 C -0.217 4.217 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.418 0.582 39 H 0.268 0.732 40 H 0.139 0.861 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -10.048 19.354 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.073 3.927 4 C -0.189 4.189 5 C -0.083 4.083 6 C -0.144 4.144 7 C 0.027 3.973 8 O -0.314 6.314 9 C -0.023 4.023 10 C 0.283 3.717 11 O -0.450 6.450 12 N -0.356 5.356 13 C 0.145 3.855 14 H 0.061 0.939 15 C -0.595 4.595 16 H 0.115 0.885 17 C -0.194 4.194 18 N -0.511 5.511 19 Si 0.809 3.191 20 H -0.175 1.175 21 H -0.205 1.205 22 H -0.208 1.208 23 C 0.357 3.643 24 F -0.183 7.183 25 F -0.133 7.133 26 F -0.203 7.203 27 C -0.085 4.085 28 C -0.235 4.235 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.101 -10.892 18.386 22.519 hybrid contribution 0.028 1.073 -0.478 1.175 sum -7.073 -9.819 17.909 21.614 Atomic orbital electron populations 1.23348 0.76472 1.05628 1.02210 1.86040 1.23491 1.26829 1.88569 1.19297 0.92802 0.84718 0.95922 1.20657 0.91797 0.99208 1.07212 1.21134 1.00868 0.90828 0.95431 1.19743 0.94064 0.94832 1.05786 1.21513 1.00449 0.92635 0.82714 1.88081 1.80154 1.35215 1.27915 1.22253 1.01150 0.87830 0.91087 1.21326 0.76847 0.81006 0.92501 1.90709 1.49847 1.50674 1.53746 1.45803 1.60539 1.21078 1.08140 1.19310 0.89312 0.96465 0.80459 0.93870 1.21273 1.14045 1.28987 0.95158 0.88486 1.26055 0.99742 0.98333 0.95258 1.70551 1.37888 1.43098 0.99542 0.85080 0.77610 0.77345 0.79091 1.17495 1.20516 1.20846 1.23325 0.86755 0.76699 0.77546 1.92986 1.95197 1.51911 1.78185 1.93375 1.94337 1.92776 1.32775 1.93066 1.61491 1.69847 1.95882 1.21137 0.94076 0.97996 0.95332 1.21463 1.01176 0.91898 1.09011 0.86182 0.91377 0.92234 0.84144 0.83721 0.89938 0.90238 0.86494 0.87082 0.74488 0.92224 0.84312 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.74 10.50 -92.30 -0.97 -7.71 16 3 C 0.12 2.59 6.69 22.51 0.15 2.74 16 4 C -0.17 -3.70 9.99 22.37 0.22 -3.48 16 5 C -0.06 -1.38 9.69 22.26 0.22 -1.17 16 6 C -0.14 -3.20 5.51 -19.85 -0.11 -3.31 16 7 C 0.10 2.01 6.06 71.24 0.43 2.44 16 8 O -0.39 -11.66 9.86 -129.94 -1.28 -12.95 16 9 C 0.06 1.41 6.42 71.24 0.46 1.87 16 10 C 0.50 19.31 7.44 87.66 0.65 19.97 16 11 O -0.57 -28.92 15.07 16.02 0.24 -28.68 16 12 N -0.70 -27.37 4.99 -446.09 -2.22 -29.60 16 13 C 0.25 12.58 2.21 44.25 0.10 12.68 16 14 H 0.04 2.53 7.58 -2.39 -0.02 2.51 16 15 C -0.56 -27.67 8.46 25.60 0.22 -27.45 16 16 H 0.10 4.34 7.74 -2.91 -0.02 4.32 16 17 C 0.01 0.57 5.20 84.65 0.44 1.01 16 18 N -0.88 -48.82 9.50 21.44 0.20 -48.62 16 19 Si 0.99 40.07 29.54 68.60 2.03 42.10 16 20 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.41 21.52 2.81 71.98 0.20 21.72 16 24 F -0.20 -9.71 16.94 44.97 0.76 -8.95 16 25 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 26 F -0.22 -11.65 15.68 44.97 0.70 -10.95 16 27 C -0.07 -1.42 9.69 22.25 0.22 -1.21 16 28 C -0.22 -4.34 9.04 22.37 0.20 -4.14 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 35 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 36 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.42 12.78 8.54 -92.71 -0.79 11.99 16 39 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.15 2.20 6.30 -2.91 -0.02 2.18 16 Total: -1.00 -74.98 363.88 4.85 -70.13 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.30 Total: 20.28 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 4.51 Total: 22.99 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -2.02 Total: -78.21 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.01 Total: -49.33 kcal Atomic # 9 Polarization: -30.00 SS G_CDS: 2.05 Total: -27.95 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -74.98 4.85 -70.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.803 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds