Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35982 * 117.00278 * 2 1 4 4 C 1.38706 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.38134 * 119.99768 * 180.02562 * 4 3 2 6 6 C 1.38700 * 119.99978 * 0.02562 * 5 4 3 7 7 O 1.35984 * 119.99899 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99884 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46889 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47142 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99518 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99970 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99877 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47232 * 325.00010 * 13 12 10 15 15 C 1.50697 * 109.47363 * 205.00235 * 13 12 10 16 16 H 1.08007 * 119.99754 * 274.94340 * 15 13 12 17 17 C 1.37875 * 120.00336 * 94.94465 * 15 13 12 18 18 N 1.31517 * 120.00271 * 184.88151 * 17 15 13 19 19 Si 1.86799 * 119.99935 * 4.87654 * 17 15 13 20 20 H 1.48498 * 109.47028 * 84.80867 * 19 17 15 21 21 H 1.48497 * 109.47307 * 204.81296 * 19 17 15 22 22 H 1.48504 * 109.47290 * 324.81280 * 19 17 15 23 23 C 1.53002 * 109.46899 * 84.99970 * 13 12 10 24 24 F 1.39893 * 109.46960 * 54.93875 * 23 13 12 25 25 F 1.39905 * 109.46761 * 174.93669 * 23 13 12 26 26 F 1.39899 * 109.47143 * 294.93509 * 23 13 12 27 27 C 1.38700 * 120.00022 * 0.24480 * 6 5 4 28 28 C 1.38129 * 119.99853 * 359.50223 * 27 6 5 29 29 H 1.09000 * 109.47388 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46784 * 300.00053 * 1 2 3 31 31 H 1.09001 * 109.46968 * 59.99185 * 1 2 3 32 32 H 1.07996 * 120.00098 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.99587 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47304 * 60.00006 * 8 7 6 35 35 H 1.09001 * 109.46921 * 300.00013 * 8 7 6 36 36 H 1.09003 * 109.46983 * 60.00000 * 9 8 7 37 37 H 1.08995 * 109.47413 * 300.00147 * 9 8 7 38 38 H 0.96991 * 120.00176 * 0.02562 * 12 10 9 39 39 H 0.97000 * 120.00193 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.00020 * 179.72593 * 27 6 5 41 41 H 1.07996 * 119.99851 * 180.23409 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0587 2.5149 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9207 4.8897 0.0027 8 6 3.0808 6.0458 0.0026 9 6 3.9481 7.3062 0.0032 10 6 3.0624 8.5255 0.0025 11 8 1.8562 8.3987 0.0011 12 7 3.6106 9.7567 0.0024 13 6 2.7496 10.9419 0.0011 14 1 1.8554 10.7408 -0.5889 15 6 3.4965 12.1049 -0.5993 16 1 4.1465 12.7063 0.0190 17 6 3.3502 12.4012 -1.9379 18 7 4.0737 13.3544 -2.4834 19 14 2.1243 11.4486 -2.9767 20 1 0.7775 12.0582 -2.8364 21 1 2.5420 11.4934 -4.4010 22 1 2.0786 10.0368 -2.5185 23 6 2.3470 11.2813 1.4377 24 9 3.4962 11.4261 2.2221 25 9 1.6212 12.4773 1.4483 26 9 1.5553 10.2508 1.9559 27 6 1.9182 3.6056 0.0067 28 6 1.2911 2.3748 0.0009 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 4.0197 0.3783 0.0005 33 1 5.1371 2.5713 0.0019 34 1 2.4509 6.0373 0.8920 35 1 2.4522 6.0381 -0.8879 36 1 4.5777 7.3144 -0.8866 37 1 4.5770 7.3141 0.8934 38 1 4.5752 9.8580 0.0023 39 1 3.9710 13.5625 -3.4252 40 1 1.3300 4.5113 0.0116 41 1 0.2126 2.3184 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928817056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = -248.567339 kcal Electronic energy + Delta-G solvation = -30166.626151 eV Core-core repulsion = 25211.185002 eV Total energy + Delta-G solvation = -4955.441149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11889 -46.64543 -46.59595 -40.59807 -39.48039 -38.86381 -36.55167 -34.92890 -32.69371 -32.04070 -31.35591 -29.60315 -28.85804 -27.31977 -25.03633 -24.70078 -22.59000 -21.95745 -21.18784 -19.95427 -18.73775 -18.23380 -17.84396 -17.59567 -16.94891 -16.74077 -16.60875 -16.32216 -16.01076 -15.94057 -15.37276 -14.97450 -14.54770 -14.47280 -14.03830 -13.79000 -13.54082 -13.52576 -13.41131 -13.09159 -13.03491 -12.96441 -12.84399 -12.81232 -12.74547 -12.55640 -12.26275 -12.18697 -11.85060 -11.62550 -11.29460 -11.19859 -10.84707 -10.77562 -10.47296 -10.21947 -9.89205 -9.55330 -9.29547 -9.03821 -8.53049 -7.91746 -6.59837 -4.75323 1.04042 1.27578 2.86467 2.98928 3.04479 3.08579 3.15129 3.22031 3.53359 3.74473 3.91747 4.03340 4.50279 4.58330 4.75862 4.78135 4.83967 4.84961 4.95612 4.96773 5.04013 5.11358 5.14061 5.20543 5.21166 5.26109 5.38611 5.57318 5.63788 5.75466 5.75911 5.87156 6.08376 6.14529 6.22170 6.36551 6.81717 7.02515 7.06633 7.33186 7.77397 8.18504 8.45460 8.69270 8.95665 10.48543 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002331 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.373391 B =12009.285384 C =12466.120087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.102 3.898 7 O -0.317 6.317 8 C 0.076 3.924 9 C -0.142 4.142 10 C 0.505 3.495 11 O -0.548 6.548 12 N -0.709 5.709 13 C 0.203 3.797 14 H 0.090 0.910 15 C -0.538 4.538 16 H 0.094 0.906 17 C 0.100 3.900 18 N -0.858 5.858 19 Si 0.868 3.132 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.255 1.255 23 C 0.438 3.562 24 F -0.192 7.192 25 F -0.181 7.181 26 F -0.196 7.196 27 C -0.168 4.168 28 C -0.166 4.166 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.276 0.724 40 H 0.136 0.864 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -20.507 3.590 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.131 4.131 5 C -0.133 4.133 6 C 0.057 3.943 7 O -0.231 6.231 8 C 0.001 3.999 9 C -0.182 4.182 10 C 0.291 3.709 11 O -0.426 6.426 12 N -0.360 5.360 13 C 0.100 3.900 14 H 0.108 0.892 15 C -0.575 4.575 16 H 0.112 0.888 17 C -0.111 4.111 18 N -0.490 5.490 19 Si 0.693 3.307 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.179 1.179 23 C 0.382 3.618 24 F -0.174 7.174 25 F -0.163 7.163 26 F -0.178 7.178 27 C -0.187 4.187 28 C -0.185 4.185 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.724 -20.581 3.443 21.044 hybrid contribution -0.696 0.024 -0.359 0.784 sum -3.421 -20.557 3.084 21.067 Atomic orbital electron populations 1.23028 0.78596 1.03781 1.01348 1.86055 1.21171 1.26779 1.89430 1.18905 0.92335 0.84162 1.00668 1.20204 0.91282 0.97805 1.03858 1.20251 1.00285 0.88964 1.03809 1.18892 0.90949 0.85569 0.98891 1.85993 1.36202 1.12064 1.88863 1.22459 0.92449 0.82095 1.02900 1.21527 0.99336 0.91432 1.05920 1.20474 0.88940 0.85058 0.76450 1.90683 1.14903 1.86866 1.50176 1.47419 1.11296 1.04626 1.72697 1.20021 0.95613 0.87222 0.87179 0.89224 1.20722 1.29683 1.11109 0.95996 0.88805 1.25005 0.94620 0.94090 0.97350 1.69852 1.36978 1.28549 1.13614 0.86932 0.82102 0.81826 0.79834 1.19002 1.20439 1.17899 1.21712 0.74211 0.73996 0.91896 1.93069 1.50745 1.95672 1.77873 1.93112 1.78413 1.47729 1.97005 1.93141 1.75604 1.59659 1.89385 1.21204 0.93640 0.98736 1.05092 1.21049 1.00063 0.91665 1.05749 0.88352 0.92728 0.92739 0.84578 0.84372 0.91075 0.91162 0.87837 0.87879 0.76064 0.91359 0.84672 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.20 10.50 -19.68 -0.21 -3.41 16 3 C 0.08 0.91 6.69 -39.24 -0.26 0.64 16 4 C -0.11 -1.15 9.98 -39.45 -0.39 -1.54 16 5 C -0.11 -1.23 9.98 -39.45 -0.39 -1.62 16 6 C 0.10 1.27 6.69 -39.24 -0.26 1.00 16 7 O -0.32 -4.16 10.14 -19.69 -0.20 -4.36 16 8 C 0.08 1.02 4.03 37.16 0.15 1.17 16 9 C -0.14 -1.90 6.07 -27.88 -0.17 -2.06 16 10 C 0.51 9.09 7.48 -10.99 -0.08 9.01 16 11 O -0.55 -11.55 14.55 5.55 0.08 -11.47 16 12 N -0.71 -13.47 4.91 -54.93 -0.27 -13.74 16 13 C 0.20 4.53 1.71 -69.08 -0.12 4.41 16 14 H 0.09 2.13 4.73 -51.93 -0.25 1.88 16 15 C -0.54 -13.35 8.52 -34.44 -0.29 -13.64 16 16 H 0.09 2.53 8.00 -52.48 -0.42 2.11 16 17 C 0.10 2.54 5.47 -17.82 -0.10 2.45 16 18 N -0.86 -23.07 13.96 55.43 0.77 -22.30 16 19 Si 0.87 19.62 26.99 -169.99 -4.59 15.03 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.25 -5.78 6.82 56.52 0.39 -5.40 16 23 C 0.44 9.52 2.83 37.16 0.11 9.63 16 24 F -0.19 -4.02 16.93 2.25 0.04 -3.98 16 25 F -0.18 -4.05 16.89 2.25 0.04 -4.01 16 26 F -0.20 -4.22 15.83 2.25 0.04 -4.19 16 27 C -0.17 -1.98 9.03 -39.45 -0.36 -2.34 16 28 C -0.17 -1.77 9.03 -39.45 -0.36 -2.12 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.07 0.96 7.60 -51.93 -0.39 0.57 16 35 H 0.07 0.97 7.63 -51.93 -0.40 0.57 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 6.76 8.59 -40.82 -0.35 6.41 16 39 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.14 1.55 6.29 -52.48 -0.33 1.22 16 41 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -29.68 362.37 -4.90 -34.59 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.53 Total: 6.23 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.54 Total: 6.14 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.50 Total: -36.04 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.33 Total: -19.24 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 0.11 Total: -12.18 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.59 Total: 15.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.68 -4.90 -34.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928817056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.982 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds