Wall clock time and date at job start Wed Apr 1 2020 04:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35978 * 117.00166 * 2 1 4 4 C 1.38693 * 120.00196 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00244 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00133 * 0.02562 * 5 4 3 7 7 O 1.35986 * 120.00366 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00040 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46778 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46885 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99814 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99801 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47264 * 34.99787 * 13 12 10 15 15 C 1.50698 * 109.46933 * 155.00183 * 13 12 10 16 16 H 1.07997 * 120.00200 * 94.68250 * 15 13 12 17 17 C 1.37880 * 119.99744 * 274.67749 * 15 13 12 18 18 N 1.31517 * 119.99908 * 174.95572 * 17 15 13 19 19 Si 1.86798 * 119.99837 * 354.96690 * 17 15 13 20 20 H 1.48500 * 109.46855 * 275.34514 * 19 17 15 21 21 H 1.48492 * 109.47585 * 35.34549 * 19 17 15 22 22 H 1.48502 * 109.47062 * 155.34907 * 19 17 15 23 23 C 1.53005 * 109.46729 * 274.99427 * 13 12 10 24 24 F 1.39896 * 109.47377 * 295.85855 * 23 13 12 25 25 F 1.39902 * 109.46728 * 55.86033 * 23 13 12 26 26 F 1.39900 * 109.47104 * 175.85510 * 23 13 12 27 27 C 1.38704 * 120.00012 * 0.25578 * 6 5 4 28 28 C 1.38127 * 119.99425 * 359.48688 * 27 6 5 29 29 H 1.09004 * 109.46797 * 300.00208 * 1 2 3 30 30 H 1.08999 * 109.47126 * 59.99848 * 1 2 3 31 31 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99765 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99907 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47516 * 60.00090 * 8 7 6 35 35 H 1.08993 * 109.47279 * 299.99622 * 8 7 6 36 36 H 1.08995 * 109.47078 * 59.99755 * 9 8 7 37 37 H 1.09006 * 109.47130 * 299.99248 * 9 8 7 38 38 H 0.97002 * 120.00137 * 359.97438 * 12 10 9 39 39 H 0.97000 * 120.00034 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.00024 * 179.72684 * 27 6 5 41 41 H 1.08001 * 120.00239 * 180.23424 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9206 4.8898 0.0027 8 6 3.0807 6.0458 0.0037 9 6 3.9480 7.3063 0.0042 10 6 3.0623 8.5255 0.0047 11 8 1.8561 8.3987 0.0042 12 7 3.6105 9.7568 0.0056 13 6 2.7494 10.9420 0.0067 14 1 1.8549 10.7407 0.5960 15 6 3.4960 12.1047 0.6080 16 1 4.0212 12.7983 -0.0319 17 6 3.5085 12.2831 1.9751 18 7 4.2401 13.2379 2.5071 19 14 2.4866 11.1685 3.0718 20 1 1.0987 11.6904 3.1520 21 1 2.4675 9.7969 2.5032 22 1 3.0812 11.1322 4.4321 23 6 2.3479 11.2819 -1.4301 24 9 3.4874 11.6321 -2.1623 25 9 1.7386 10.1690 -2.0196 26 9 1.4506 12.3552 -1.4221 27 6 1.9181 3.6056 0.0070 28 6 1.2911 2.3749 0.0011 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0197 0.3783 0.0014 33 1 5.1371 2.5713 0.0019 34 1 2.4515 6.0370 0.8937 35 1 2.4515 6.0386 -0.8862 36 1 4.5769 7.3148 -0.8860 37 1 4.5776 7.3138 0.8940 38 1 4.5752 9.8581 0.0064 39 1 4.2492 13.3631 3.4689 40 1 1.3300 4.5114 0.0118 41 1 0.2125 2.3183 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928817057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:53 Heat of formation + Delta-G solvation = -248.253294 kcal Electronic energy + Delta-G solvation = -30206.590927 eV Core-core repulsion = 25251.163395 eV Total energy + Delta-G solvation = -4955.427531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.14546 -46.66211 -46.63165 -40.59735 -39.47950 -38.86361 -36.55119 -34.93922 -32.66667 -32.03589 -31.35545 -29.60054 -28.85242 -27.31951 -25.05742 -24.69998 -22.58568 -21.95405 -21.19504 -19.93678 -18.73245 -18.24957 -17.86578 -17.60601 -16.97431 -16.72321 -16.59834 -16.31621 -16.02247 -15.94010 -15.34694 -14.97435 -14.54858 -14.45637 -14.07061 -13.79433 -13.56868 -13.53746 -13.41099 -13.11430 -13.02183 -12.96689 -12.84717 -12.83475 -12.74393 -12.57340 -12.27378 -12.18444 -11.81194 -11.62452 -11.29275 -11.18386 -10.84543 -10.75447 -10.47183 -10.26807 -9.90000 -9.54516 -9.29516 -9.03278 -8.53374 -7.91663 -6.59148 -4.74417 1.04106 1.27644 2.86572 2.99215 3.04439 3.08785 3.16312 3.22960 3.53427 3.73510 3.91531 4.04124 4.50314 4.58353 4.76040 4.81193 4.83969 4.85031 4.95038 4.96848 5.01669 5.09767 5.14016 5.17590 5.21238 5.25830 5.37588 5.56298 5.63613 5.75541 5.76263 5.87278 6.08396 6.14678 6.24814 6.36635 6.81763 7.03054 7.06682 7.33314 7.77937 8.18922 8.46488 8.70327 8.95998 10.49118 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002368 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.400402 B =11819.152604 C =12376.659532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.102 3.898 7 O -0.317 6.317 8 C 0.077 3.923 9 C -0.143 4.143 10 C 0.507 3.493 11 O -0.548 6.548 12 N -0.710 5.710 13 C 0.205 3.795 14 H 0.088 0.912 15 C -0.539 4.539 16 H 0.095 0.905 17 C 0.099 3.901 18 N -0.858 5.858 19 Si 0.870 3.130 20 H -0.267 1.267 21 H -0.255 1.255 22 H -0.280 1.280 23 C 0.441 3.559 24 F -0.189 7.189 25 F -0.196 7.196 26 F -0.184 7.184 27 C -0.168 4.168 28 C -0.166 4.166 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.276 0.724 40 H 0.135 0.865 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -20.413 -3.679 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.057 3.943 7 O -0.231 6.231 8 C 0.001 3.999 9 C -0.183 4.183 10 C 0.293 3.707 11 O -0.427 6.427 12 N -0.362 5.362 13 C 0.102 3.898 14 H 0.106 0.894 15 C -0.577 4.577 16 H 0.113 0.887 17 C -0.111 4.111 18 N -0.491 5.491 19 Si 0.695 3.305 20 H -0.192 1.192 21 H -0.178 1.178 22 H -0.206 1.206 23 C 0.386 3.614 24 F -0.170 7.170 25 F -0.177 7.177 26 F -0.166 7.166 27 C -0.187 4.187 28 C -0.185 4.185 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.880 -20.500 -3.534 21.001 hybrid contribution -0.588 -0.064 0.412 0.721 sum -3.468 -20.564 -3.122 21.087 Atomic orbital electron populations 1.23029 0.78594 1.03781 1.01349 1.86056 1.21172 1.26776 1.89431 1.18902 0.92334 0.84162 1.00671 1.20201 0.91286 0.97804 1.03860 1.20249 1.00286 0.88965 1.03812 1.18895 0.90951 0.85570 0.98886 1.85994 1.36208 1.12066 1.88860 1.22456 0.92448 0.82089 1.02887 1.21535 0.99364 0.91483 1.05891 1.20445 0.88919 0.85043 0.76307 1.90670 1.14932 1.86887 1.50209 1.47515 1.11297 1.04658 1.72748 1.20011 0.95519 0.87196 0.87097 0.89425 1.20767 1.34928 1.08610 0.93395 0.88703 1.24982 0.93795 0.94573 0.97748 1.69861 1.36027 1.30189 1.12993 0.86908 0.81166 0.82333 0.80068 1.19202 1.17835 1.20585 1.21541 0.74273 0.73811 0.91815 1.93083 1.51350 1.92280 1.80336 1.93136 1.84121 1.53622 1.86852 1.93106 1.69038 1.57399 1.97010 1.21203 0.93640 0.98735 1.05093 1.21052 1.00061 0.91663 1.05749 0.92738 0.92724 0.88353 0.84578 0.84374 0.91182 0.91064 0.87876 0.87887 0.76089 0.91395 0.84674 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.21 10.50 -19.67 -0.21 -3.41 16 3 C 0.08 0.91 6.69 -39.24 -0.26 0.65 16 4 C -0.11 -1.15 9.98 -39.45 -0.39 -1.55 16 5 C -0.11 -1.23 9.98 -39.45 -0.39 -1.63 16 6 C 0.10 1.27 6.69 -39.24 -0.26 1.01 16 7 O -0.32 -4.19 10.14 -19.70 -0.20 -4.39 16 8 C 0.08 1.03 4.03 37.16 0.15 1.18 16 9 C -0.14 -1.93 6.07 -27.88 -0.17 -2.10 16 10 C 0.51 9.16 7.12 -10.98 -0.08 9.09 16 11 O -0.55 -11.56 14.59 5.56 0.08 -11.47 16 12 N -0.71 -13.52 4.93 -54.93 -0.27 -13.79 16 13 C 0.20 4.55 1.45 -69.08 -0.10 4.45 16 14 H 0.09 2.07 5.34 -51.93 -0.28 1.79 16 15 C -0.54 -13.37 8.68 -34.44 -0.30 -13.67 16 16 H 0.10 2.56 7.69 -52.49 -0.40 2.16 16 17 C 0.10 2.52 5.47 -17.82 -0.10 2.42 16 18 N -0.86 -23.06 13.96 55.43 0.77 -22.28 16 19 Si 0.87 19.53 26.92 -169.99 -4.58 14.96 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.25 -5.66 6.82 56.52 0.39 -5.27 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 C 0.44 9.53 2.83 37.16 0.11 9.63 16 24 F -0.19 -3.98 16.65 2.25 0.04 -3.94 16 25 F -0.20 -4.15 15.57 2.25 0.04 -4.12 16 26 F -0.18 -4.05 17.12 2.25 0.04 -4.02 16 27 C -0.17 -1.99 9.03 -39.45 -0.36 -2.35 16 28 C -0.17 -1.77 9.03 -39.45 -0.36 -2.13 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.07 0.97 7.61 -51.93 -0.40 0.58 16 35 H 0.07 0.97 7.63 -51.93 -0.40 0.58 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.40 6.81 8.59 -40.82 -0.35 6.46 16 39 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.14 1.56 6.29 -52.49 -0.33 1.23 16 41 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -29.58 361.85 -4.90 -34.48 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.54 Total: 6.35 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.52 Total: 6.17 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.50 Total: -36.08 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.33 Total: -19.28 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 0.11 Total: -12.07 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.58 Total: 14.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.58 -4.90 -34.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928817057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.771 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds