Wall clock time and date at job start Wed Apr 1 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35978 * 117.00166 * 2 1 4 4 C 1.38693 * 120.00196 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00244 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00133 * 0.02562 * 5 4 3 7 7 O 1.35986 * 120.00366 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00040 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46778 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46885 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99814 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99801 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47264 * 34.99787 * 13 12 10 15 15 C 1.50698 * 109.46933 * 155.00183 * 13 12 10 16 16 H 1.07997 * 120.00200 * 94.68250 * 15 13 12 17 17 C 1.37880 * 119.99744 * 274.67749 * 15 13 12 18 18 N 1.31517 * 119.99908 * 174.95572 * 17 15 13 19 19 Si 1.86798 * 119.99837 * 354.96690 * 17 15 13 20 20 H 1.48500 * 109.46855 * 275.34514 * 19 17 15 21 21 H 1.48492 * 109.47585 * 35.34549 * 19 17 15 22 22 H 1.48502 * 109.47062 * 155.34907 * 19 17 15 23 23 C 1.53005 * 109.46729 * 274.99427 * 13 12 10 24 24 F 1.39896 * 109.47377 * 295.85855 * 23 13 12 25 25 F 1.39902 * 109.46728 * 55.86033 * 23 13 12 26 26 F 1.39900 * 109.47104 * 175.85510 * 23 13 12 27 27 C 1.38704 * 120.00012 * 0.25578 * 6 5 4 28 28 C 1.38127 * 119.99425 * 359.48688 * 27 6 5 29 29 H 1.09004 * 109.46797 * 300.00208 * 1 2 3 30 30 H 1.08999 * 109.47126 * 59.99848 * 1 2 3 31 31 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99765 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99907 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47516 * 60.00090 * 8 7 6 35 35 H 1.08993 * 109.47279 * 299.99622 * 8 7 6 36 36 H 1.08995 * 109.47078 * 59.99755 * 9 8 7 37 37 H 1.09006 * 109.47130 * 299.99248 * 9 8 7 38 38 H 0.97002 * 120.00137 * 359.97438 * 12 10 9 39 39 H 0.97000 * 120.00034 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.00024 * 179.72684 * 27 6 5 41 41 H 1.08001 * 120.00239 * 180.23424 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9206 4.8898 0.0027 8 6 3.0807 6.0458 0.0037 9 6 3.9480 7.3063 0.0042 10 6 3.0623 8.5255 0.0047 11 8 1.8561 8.3987 0.0042 12 7 3.6105 9.7568 0.0056 13 6 2.7494 10.9420 0.0067 14 1 1.8549 10.7407 0.5960 15 6 3.4960 12.1047 0.6080 16 1 4.0212 12.7983 -0.0319 17 6 3.5085 12.2831 1.9751 18 7 4.2401 13.2379 2.5071 19 14 2.4866 11.1685 3.0718 20 1 1.0987 11.6904 3.1520 21 1 2.4675 9.7969 2.5032 22 1 3.0812 11.1322 4.4321 23 6 2.3479 11.2819 -1.4301 24 9 3.4874 11.6321 -2.1623 25 9 1.7386 10.1690 -2.0196 26 9 1.4506 12.3552 -1.4221 27 6 1.9181 3.6056 0.0070 28 6 1.2911 2.3749 0.0011 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0197 0.3783 0.0014 33 1 5.1371 2.5713 0.0019 34 1 2.4515 6.0370 0.8937 35 1 2.4515 6.0386 -0.8862 36 1 4.5769 7.3148 -0.8860 37 1 4.5776 7.3138 0.8940 38 1 4.5752 9.8581 0.0064 39 1 4.2492 13.3631 3.4689 40 1 1.3300 4.5114 0.0118 41 1 0.2125 2.3183 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928817057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:52 Heat of formation + Delta-G solvation = -267.064233 kcal Electronic energy + Delta-G solvation = -30207.406630 eV Core-core repulsion = 25251.163395 eV Total energy + Delta-G solvation = -4956.243235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.89966 -48.41193 -48.38545 -41.45033 -40.77334 -39.87535 -37.39682 -36.64380 -34.49766 -33.23669 -32.17556 -30.94113 -29.95666 -27.94390 -26.93214 -25.81307 -23.59849 -22.98778 -22.59261 -21.41510 -20.07179 -19.50525 -19.35660 -18.80021 -18.67659 -18.41906 -17.61995 -17.43995 -17.34699 -16.94646 -16.60953 -15.90773 -15.79207 -15.66666 -15.36607 -15.27262 -15.19308 -14.86758 -14.78445 -14.59292 -14.57606 -14.52038 -14.42892 -14.15482 -14.00342 -13.64987 -13.60329 -13.13246 -12.98976 -12.89475 -12.55776 -12.48663 -12.14683 -12.03674 -11.84728 -11.65855 -11.34972 -11.14707 -10.90816 -10.16187 -10.09880 -8.75849 -8.54821 -6.73469 0.23404 0.43245 1.25954 1.33741 1.41438 1.54311 1.73813 2.08482 2.17340 2.37245 2.48208 2.70911 2.97857 3.24461 3.33242 3.50967 3.62396 3.80689 3.81446 3.93435 4.04350 4.13626 4.28720 4.35520 4.38695 4.43821 4.49819 4.55225 4.72051 4.72738 4.74143 4.89667 4.93864 5.05928 5.27724 5.32227 5.42840 5.56340 5.86868 6.26966 6.44100 6.48043 6.66127 6.99436 7.24037 8.57449 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002368 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.400402 B =11819.152604 C =12376.659532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.078 3.922 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.078 3.922 7 O -0.320 6.320 8 C 0.082 3.918 9 C -0.131 4.131 10 C 0.506 3.494 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.212 3.788 14 H 0.077 0.923 15 C -0.540 4.540 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.899 5.899 19 Si 0.923 3.077 20 H -0.270 1.270 21 H -0.251 1.251 22 H -0.273 1.273 23 C 0.443 3.557 24 F -0.185 7.185 25 F -0.191 7.191 26 F -0.188 7.188 27 C -0.179 4.179 28 C -0.172 4.172 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.415 0.585 39 H 0.280 0.720 40 H 0.132 0.868 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -22.825 -3.639 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.034 3.966 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.033 3.967 7 O -0.235 6.235 8 C 0.006 3.994 9 C -0.171 4.171 10 C 0.294 3.706 11 O -0.458 6.458 12 N -0.362 5.362 13 C 0.107 3.893 14 H 0.095 0.905 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.747 3.253 20 H -0.196 1.196 21 H -0.175 1.175 22 H -0.198 1.198 23 C 0.387 3.613 24 F -0.167 7.167 25 F -0.173 7.173 26 F -0.170 7.170 27 C -0.198 4.198 28 C -0.191 4.191 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.849 -22.936 -3.503 23.377 hybrid contribution -0.641 0.589 0.307 0.923 sum -3.490 -22.347 -3.196 22.843 Atomic orbital electron populations 1.23306 0.76834 1.05517 1.01949 1.86045 1.23061 1.26359 1.89242 1.19117 0.92824 0.84540 1.00165 1.20496 0.91470 0.98387 1.03121 1.20487 1.01160 0.88568 1.03051 1.19156 0.91456 0.85654 1.00430 1.85953 1.36079 1.12179 1.89282 1.22301 0.92318 0.82443 1.02306 1.21456 0.98629 0.88901 1.08096 1.21098 0.89023 0.85586 0.74922 1.90662 1.16592 1.87278 1.51306 1.47091 1.11611 1.04309 1.73199 1.19692 0.95079 0.87368 0.87121 0.90508 1.20689 1.34691 1.09188 0.93165 0.91638 1.25539 0.94482 0.95558 0.98806 1.69935 1.37852 1.31999 1.13555 0.86086 0.79553 0.80816 0.78891 1.19552 1.17452 1.19799 1.21453 0.74316 0.73800 0.91735 1.93089 1.51150 1.92259 1.80195 1.93144 1.84051 1.53355 1.86731 1.93097 1.69193 1.57642 1.97030 1.21282 0.93690 0.99164 1.05675 1.21248 1.01083 0.91263 1.05469 0.92141 0.92085 0.86172 0.82607 0.82718 0.91997 0.91644 0.85356 0.85834 0.74682 0.91034 0.85021 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.04 10.50 -93.30 -0.98 -7.02 16 3 C 0.08 1.57 6.69 22.49 0.15 1.72 16 4 C -0.12 -2.16 9.98 22.35 0.22 -1.94 16 5 C -0.11 -2.26 9.98 22.35 0.22 -2.04 16 6 C 0.08 1.84 6.69 22.49 0.15 1.99 16 7 O -0.32 -7.94 10.14 -93.40 -0.95 -8.89 16 8 C 0.08 2.09 4.03 71.98 0.29 2.38 16 9 C -0.13 -3.21 6.07 29.85 0.18 -3.03 16 10 C 0.51 17.37 7.12 87.66 0.62 17.99 16 11 O -0.58 -23.66 14.59 -3.03 -0.04 -23.70 16 12 N -0.71 -25.99 4.93 -446.09 -2.20 -28.19 16 13 C 0.21 9.29 1.45 44.25 0.06 9.36 16 14 H 0.08 3.57 5.34 -2.39 -0.01 3.55 16 15 C -0.54 -26.87 8.68 25.60 0.22 -26.65 16 16 H 0.07 3.61 7.69 -2.91 -0.02 3.59 16 17 C 0.06 3.18 5.47 84.65 0.46 3.64 16 18 N -0.90 -48.73 13.96 21.45 0.30 -48.43 16 19 Si 0.92 39.95 26.92 68.60 1.85 41.80 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.25 -10.60 6.82 99.48 0.68 -9.92 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 C 0.44 18.85 2.83 71.98 0.20 19.05 16 24 F -0.19 -7.69 16.65 44.97 0.75 -6.94 16 25 F -0.19 -7.91 15.57 44.97 0.70 -7.21 16 26 F -0.19 -8.24 17.12 44.97 0.77 -7.47 16 27 C -0.18 -4.11 9.03 22.35 0.20 -3.91 16 28 C -0.17 -3.45 9.03 22.36 0.20 -3.24 16 29 H 0.06 0.58 7.66 -2.38 -0.02 0.56 16 30 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.06 1.66 7.61 -2.39 -0.02 1.64 16 35 H 0.07 1.72 7.63 -2.39 -0.02 1.71 16 36 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.42 13.34 8.59 -92.71 -0.80 12.55 16 39 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.13 3.01 6.29 -2.91 -0.02 2.99 16 41 H 0.15 2.28 6.29 -2.91 -0.02 2.26 16 Total: -1.00 -62.75 361.85 4.78 -57.97 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.28 Total: 21.44 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 4.31 Total: 16.63 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.90 Total: -76.61 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.97 Total: -39.61 kcal Atomic # 9 Polarization: -23.84 SS G_CDS: 2.22 Total: -21.62 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.85 Total: 41.80 kcal Total: -62.75 4.78 -57.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928817057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.093 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds