Wall clock time and date at job start Wed Apr 1 2020 04:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 117.00343 * 2 1 4 4 O 1.20824 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99866 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47396 * 299.99701 * 5 3 2 7 7 C 1.50699 * 109.47504 * 60.00225 * 5 3 2 8 8 C 1.38228 * 119.95553 * 79.72344 * 7 5 3 9 9 C 1.38430 * 120.04403 * 179.72838 * 8 7 5 10 10 F 1.35092 * 120.02162 * 180.29593 * 9 8 7 11 11 C 1.38599 * 119.95157 * 0.54311 * 9 8 7 12 12 F 1.35106 * 120.04165 * 179.74536 * 11 9 8 13 13 C 1.38592 * 119.91653 * 359.73259 * 11 9 8 14 14 F 1.35100 * 120.02618 * 180.02562 * 13 11 9 15 15 C 1.38224 * 119.95589 * 259.99594 * 7 5 3 16 16 N 1.46903 * 109.47064 * 180.02562 * 5 3 2 17 17 C 1.46893 * 111.00424 * 183.95312 * 16 5 3 18 18 C 1.46901 * 111.00255 * 59.99487 * 16 5 3 19 19 C 1.52997 * 109.47781 * 197.33565 * 18 16 5 20 20 H 1.09000 * 109.46779 * 53.48483 * 19 18 16 21 21 O 1.42902 * 109.47118 * 293.48947 * 19 18 16 22 22 C 1.50695 * 109.47395 * 173.48342 * 19 18 16 23 23 H 1.07995 * 120.00235 * 0.02562 * 22 19 18 24 24 C 1.37879 * 119.99877 * 179.97438 * 22 19 18 25 25 N 1.31518 * 119.99909 * 0.02562 * 24 22 19 26 26 Si 1.86796 * 119.99855 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47364 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47312 * 120.00367 * 26 24 22 29 29 H 1.48501 * 109.47016 * 240.00234 * 26 24 22 30 30 H 1.08997 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46803 * 299.99730 * 1 2 3 32 32 H 1.09002 * 109.46862 * 59.99410 * 1 2 3 33 33 H 1.08004 * 119.97656 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.97521 * 359.97438 * 15 7 5 35 35 H 1.09000 * 109.47450 * 52.41461 * 17 16 5 36 36 H 1.09001 * 109.47797 * 172.41494 * 17 16 5 37 37 H 1.09000 * 109.47247 * 292.41817 * 17 16 5 38 38 H 1.08999 * 109.47174 * 317.34110 * 18 16 5 39 39 H 1.09002 * 109.46774 * 77.33020 * 18 16 5 40 40 H 0.96697 * 113.99532 * 299.99751 * 21 19 18 41 41 H 0.97002 * 119.99557 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1047 0.5919 -1.2314 8 6 4.0984 1.2523 -2.4457 9 6 4.5976 0.6289 -3.5763 10 9 4.5967 1.2770 -4.7616 11 6 5.0937 -0.6626 -3.4924 12 9 5.5766 -1.2746 -4.5958 13 6 5.0939 -1.3252 -2.2751 14 9 5.5774 -2.5839 -2.1907 15 6 4.5990 -0.6961 -1.1457 16 7 3.9830 2.6835 0.0002 17 6 5.4441 2.8004 -0.0949 18 6 3.4751 3.3821 1.1884 19 6 3.5428 4.8933 0.9596 20 1 3.0303 5.1433 0.0306 21 8 4.9096 5.3015 0.8742 22 6 2.8765 5.6057 2.1082 23 1 2.4480 5.0376 2.9205 24 6 2.8149 6.9831 2.1226 25 7 3.3371 7.6751 1.1336 26 14 1.9896 7.8662 3.5468 27 1 1.4866 6.8675 4.5239 28 1 2.9727 8.7580 4.2128 29 1 0.8539 8.6753 3.0362 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.7081 2.2572 -2.5114 34 1 4.5993 -1.2119 -0.1968 35 1 5.8004 2.2211 -0.9467 36 1 5.7171 3.8473 -0.2279 37 1 5.8994 2.4196 0.8193 38 1 2.4412 3.0878 1.3688 39 1 4.0840 3.1179 2.0531 40 1 5.4276 5.1096 1.6679 41 1 3.2934 8.6440 1.1436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930031840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:40 Heat of formation + Delta-G solvation = -214.421310 kcal Electronic energy + Delta-G solvation = -31523.924829 eV Core-core repulsion = 26569.964363 eV Total energy + Delta-G solvation = -4953.960466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.95899 -49.36656 -48.64073 -40.93451 -39.30009 -37.54693 -36.19758 -34.94012 -32.15263 -31.71631 -30.84153 -28.72872 -28.62559 -27.03145 -25.41343 -23.70939 -23.18947 -22.60259 -20.77671 -20.22085 -18.51293 -18.26484 -17.86104 -17.37053 -17.12658 -16.95406 -16.63510 -16.27586 -16.09190 -15.65916 -15.25735 -15.12248 -14.96682 -14.77926 -14.56148 -14.54552 -14.38264 -14.04527 -13.60599 -13.27460 -13.03535 -12.95382 -12.63505 -12.31640 -12.24709 -11.99923 -11.92926 -11.90127 -11.58189 -11.08666 -10.92191 -10.89978 -10.80108 -10.65291 -10.18862 -9.90608 -9.21116 -9.11217 -8.98927 -8.55658 -8.31816 -7.83261 -5.99423 -4.16768 0.33880 0.49865 2.17941 2.49075 2.85277 3.08485 3.27228 3.35557 3.38371 3.79830 3.90841 4.01523 4.14953 4.27116 4.45540 4.69251 4.78690 4.97104 5.04305 5.12217 5.14545 5.17859 5.27687 5.44005 5.46157 5.54942 5.67391 5.78431 5.90283 6.02409 6.18102 6.28037 6.31641 6.34648 6.64977 6.95660 7.21594 7.29393 7.78493 7.80854 7.97044 8.20640 8.85801 9.36740 9.59135 11.04848 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.003149 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.718267 B = 8888.978941 C = 9770.976100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.457 6.457 5 C 0.131 3.869 6 H 0.088 0.912 7 C -0.030 4.030 8 C -0.100 4.100 9 C 0.097 3.903 10 F -0.117 7.117 11 C 0.034 3.966 12 F -0.119 7.119 13 C 0.095 3.905 14 F -0.120 7.120 15 C -0.117 4.117 16 N -0.514 5.514 17 C 0.014 3.986 18 C 0.022 3.978 19 C 0.243 3.757 20 H 0.068 0.932 21 O -0.561 6.561 22 C -0.569 4.569 23 H 0.053 0.947 24 C 0.080 3.920 25 N -0.857 5.857 26 Si 0.888 3.112 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.021 0.979 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.340 0.660 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -19.692 -4.825 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.299 3.701 4 O -0.340 6.340 5 C 0.022 3.978 6 H 0.106 0.894 7 C -0.032 4.032 8 C -0.119 4.119 9 C 0.077 3.923 10 F -0.095 7.095 11 C 0.013 3.987 12 F -0.097 7.097 13 C 0.075 3.925 14 F -0.098 7.098 15 C -0.136 4.136 16 N -0.240 5.240 17 C -0.133 4.133 18 C -0.105 4.105 19 C 0.185 3.815 20 H 0.085 0.915 21 O -0.364 6.364 22 C -0.607 4.607 23 H 0.072 0.928 24 C -0.126 4.126 25 N -0.493 5.493 26 Si 0.715 3.285 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.187 0.813 34 H 0.174 0.826 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.039 0.961 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.183 0.817 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.811 -18.821 -6.009 19.774 hybrid contribution -0.053 -0.294 1.650 1.677 sum 0.757 -19.116 -4.359 19.621 Atomic orbital electron populations 1.23262 0.76155 1.03460 1.02887 1.86466 1.23491 1.33396 1.84608 1.23233 0.91125 0.81753 0.74001 1.90768 1.66006 1.35535 1.41648 1.20063 0.88140 0.93870 0.95771 0.89439 1.19059 0.97378 0.92698 0.94020 1.21274 0.98656 1.02505 0.89428 1.17305 1.02661 0.89296 0.83046 1.91582 1.94253 1.80341 1.43310 1.17626 1.05455 0.92021 0.83605 1.91555 1.85668 1.82297 1.50212 1.17140 1.01562 0.81309 0.92513 1.91563 1.85515 1.36056 1.96699 1.20984 0.99486 0.94830 0.98318 1.62065 1.12641 1.05640 1.43668 1.22861 0.85248 1.06123 0.99091 1.23449 1.00232 0.99671 0.87105 1.19301 0.80291 0.84090 0.97818 0.91468 1.86561 1.23758 1.85785 1.40252 1.21600 1.39785 0.91861 1.07458 0.92827 1.25002 0.94316 0.97650 0.95600 1.70090 1.42397 1.06340 1.30468 0.86638 0.79359 0.79779 0.82699 1.19813 1.20951 1.20881 0.88241 0.91689 0.91778 0.81297 0.82599 0.92745 0.86692 0.96051 0.89370 0.95846 0.81670 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.35 10.48 -39.27 -0.41 -4.76 16 3 C 0.46 6.65 6.80 36.00 0.24 6.89 16 4 O -0.46 -8.34 13.73 -18.75 -0.26 -8.60 16 5 C 0.13 1.70 2.19 -70.02 -0.15 1.55 16 6 H 0.09 0.96 8.00 -51.93 -0.42 0.55 16 7 C -0.03 -0.34 3.57 -104.63 -0.37 -0.71 16 8 C -0.10 -1.20 8.15 -39.51 -0.32 -1.52 16 9 C 0.10 1.16 7.31 -39.38 -0.29 0.87 16 10 F -0.12 -1.51 17.18 2.25 0.04 -1.47 16 11 C 0.03 0.40 7.31 -39.32 -0.29 0.11 16 12 F -0.12 -1.48 17.10 2.25 0.04 -1.44 16 13 C 0.10 0.99 7.31 -39.38 -0.29 0.70 16 14 F -0.12 -1.28 17.18 2.25 0.04 -1.24 16 15 C -0.12 -1.09 9.64 -39.51 -0.38 -1.47 16 16 N -0.51 -8.31 3.72 -237.70 -0.88 -9.20 16 17 C 0.01 0.20 8.74 60.06 0.52 0.72 16 18 C 0.02 0.42 4.25 -3.82 -0.02 0.41 16 19 C 0.24 5.93 3.02 -27.89 -0.08 5.85 16 20 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 21 O -0.56 -13.31 9.80 -35.23 -0.35 -13.66 16 22 C -0.57 -15.36 8.76 -34.44 -0.30 -15.66 16 23 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 24 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 25 N -0.86 -25.05 12.84 55.43 0.71 -24.34 16 26 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.17 2.26 7.72 -52.48 -0.41 1.86 16 34 H 0.16 1.09 8.03 -52.49 -0.42 0.66 16 35 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 36 H 0.12 1.97 5.60 -51.93 -0.29 1.68 16 37 H 0.02 0.28 8.03 -51.93 -0.42 -0.14 16 38 H 0.09 1.83 5.22 -51.93 -0.27 1.56 16 39 H 0.02 0.43 7.95 -51.93 -0.41 0.02 16 40 H 0.34 7.16 9.04 45.56 0.41 7.57 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -31.21 360.05 -5.18 -36.39 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.76 Total: 5.60 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.75 Total: 1.29 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.17 Total: -33.54 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -1.01 Total: -27.01 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.12 Total: -4.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.21 -5.18 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930031840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.029 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds