Wall clock time and date at job start Wed Apr 1 2020 04:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 117.00343 * 2 1 4 4 O 1.20824 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99866 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47396 * 299.99701 * 5 3 2 7 7 C 1.50699 * 109.47504 * 60.00225 * 5 3 2 8 8 C 1.38228 * 119.95553 * 79.72344 * 7 5 3 9 9 C 1.38430 * 120.04403 * 179.72838 * 8 7 5 10 10 F 1.35092 * 120.02162 * 180.29593 * 9 8 7 11 11 C 1.38599 * 119.95157 * 0.54311 * 9 8 7 12 12 F 1.35106 * 120.04165 * 179.74536 * 11 9 8 13 13 C 1.38592 * 119.91653 * 359.73259 * 11 9 8 14 14 F 1.35100 * 120.02618 * 180.02562 * 13 11 9 15 15 C 1.38224 * 119.95589 * 259.99594 * 7 5 3 16 16 N 1.46903 * 109.47064 * 180.02562 * 5 3 2 17 17 C 1.46893 * 111.00424 * 183.95312 * 16 5 3 18 18 C 1.46901 * 111.00255 * 59.99487 * 16 5 3 19 19 C 1.52997 * 109.47781 * 197.33565 * 18 16 5 20 20 H 1.09000 * 109.46779 * 53.48483 * 19 18 16 21 21 O 1.42902 * 109.47118 * 293.48947 * 19 18 16 22 22 C 1.50695 * 109.47395 * 173.48342 * 19 18 16 23 23 H 1.07995 * 120.00235 * 0.02562 * 22 19 18 24 24 C 1.37879 * 119.99877 * 179.97438 * 22 19 18 25 25 N 1.31518 * 119.99909 * 0.02562 * 24 22 19 26 26 Si 1.86796 * 119.99855 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47364 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47312 * 120.00367 * 26 24 22 29 29 H 1.48501 * 109.47016 * 240.00234 * 26 24 22 30 30 H 1.08997 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46803 * 299.99730 * 1 2 3 32 32 H 1.09002 * 109.46862 * 59.99410 * 1 2 3 33 33 H 1.08004 * 119.97656 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.97521 * 359.97438 * 15 7 5 35 35 H 1.09000 * 109.47450 * 52.41461 * 17 16 5 36 36 H 1.09001 * 109.47797 * 172.41494 * 17 16 5 37 37 H 1.09000 * 109.47247 * 292.41817 * 17 16 5 38 38 H 1.08999 * 109.47174 * 317.34110 * 18 16 5 39 39 H 1.09002 * 109.46774 * 77.33020 * 18 16 5 40 40 H 0.96697 * 113.99532 * 299.99751 * 21 19 18 41 41 H 0.97002 * 119.99557 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1047 0.5919 -1.2314 8 6 4.0984 1.2523 -2.4457 9 6 4.5976 0.6289 -3.5763 10 9 4.5967 1.2770 -4.7616 11 6 5.0937 -0.6626 -3.4924 12 9 5.5766 -1.2746 -4.5958 13 6 5.0939 -1.3252 -2.2751 14 9 5.5774 -2.5839 -2.1907 15 6 4.5990 -0.6961 -1.1457 16 7 3.9830 2.6835 0.0002 17 6 5.4441 2.8004 -0.0949 18 6 3.4751 3.3821 1.1884 19 6 3.5428 4.8933 0.9596 20 1 3.0303 5.1433 0.0306 21 8 4.9096 5.3015 0.8742 22 6 2.8765 5.6057 2.1082 23 1 2.4480 5.0376 2.9205 24 6 2.8149 6.9831 2.1226 25 7 3.3371 7.6751 1.1336 26 14 1.9896 7.8662 3.5468 27 1 1.4866 6.8675 4.5239 28 1 2.9727 8.7580 4.2128 29 1 0.8539 8.6753 3.0362 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.7081 2.2572 -2.5114 34 1 4.5993 -1.2119 -0.1968 35 1 5.8004 2.2211 -0.9467 36 1 5.7171 3.8473 -0.2279 37 1 5.8994 2.4196 0.8193 38 1 2.4412 3.0878 1.3688 39 1 4.0840 3.1179 2.0531 40 1 5.4276 5.1096 1.6679 41 1 3.2934 8.6440 1.1436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930031840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:40 Heat of formation + Delta-G solvation = -235.214355 kcal Electronic energy + Delta-G solvation = -31524.826483 eV Core-core repulsion = 26569.964363 eV Total energy + Delta-G solvation = -4954.862120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.88140 -50.27287 -49.56989 -42.02558 -40.27246 -38.87264 -37.48130 -36.47625 -34.21510 -32.86271 -31.73815 -30.32852 -29.67395 -27.96439 -27.13304 -24.72849 -24.44628 -23.65209 -22.33456 -21.45791 -19.47503 -19.23003 -19.04562 -18.77236 -18.32187 -17.96407 -17.70012 -17.37321 -17.08394 -16.65436 -16.56580 -16.45087 -16.15113 -16.03860 -16.01178 -15.75094 -15.51719 -15.38395 -14.71819 -14.51805 -14.40867 -14.08680 -13.93822 -13.63704 -13.33017 -13.15032 -12.98835 -12.87707 -12.83606 -12.80053 -12.67035 -12.58593 -12.25100 -11.94784 -11.73904 -11.36228 -10.94213 -10.67403 -10.10897 -10.04626 -9.96063 -9.22730 -8.09812 -6.34369 -0.56714 -0.36407 1.08168 1.40092 1.41781 1.51684 1.53342 1.94386 2.19238 2.40252 2.81794 2.98749 3.07794 3.16358 3.18772 3.32094 3.76521 3.85971 4.03844 4.19132 4.30483 4.31494 4.34991 4.35627 4.38315 4.47242 4.63089 4.69691 4.73274 4.74770 4.81481 5.00317 5.11754 5.30855 5.41954 5.45496 5.67642 5.71202 6.02542 6.08620 6.23035 6.72833 6.78477 7.38041 7.62604 8.94539 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.003149 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.718267 B = 8888.978941 C = 9770.976100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.462 3.538 4 O -0.505 6.505 5 C 0.135 3.865 6 H 0.123 0.877 7 C -0.031 4.031 8 C -0.103 4.103 9 C 0.089 3.911 10 F -0.128 7.128 11 C 0.032 3.968 12 F -0.126 7.126 13 C 0.102 3.898 14 F -0.118 7.118 15 C -0.089 4.089 16 N -0.533 5.533 17 C 0.021 3.979 18 C 0.044 3.956 19 C 0.247 3.753 20 H 0.016 0.984 21 O -0.569 6.569 22 C -0.582 4.582 23 H 0.055 0.945 24 C 0.027 3.973 25 N -0.898 5.898 26 Si 0.956 3.044 27 H -0.264 1.264 28 H -0.277 1.277 29 H -0.283 1.283 30 H 0.138 0.862 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.149 0.851 34 H 0.192 0.808 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.352 0.648 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -22.306 -3.158 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.304 3.696 4 O -0.392 6.392 5 C 0.026 3.974 6 H 0.141 0.859 7 C -0.032 4.032 8 C -0.122 4.122 9 C 0.069 3.931 10 F -0.106 7.106 11 C 0.011 3.989 12 F -0.104 7.104 13 C 0.082 3.918 14 F -0.096 7.096 15 C -0.108 4.108 16 N -0.259 5.259 17 C -0.126 4.126 18 C -0.083 4.083 19 C 0.189 3.811 20 H 0.034 0.966 21 O -0.373 6.373 22 C -0.620 4.620 23 H 0.074 0.926 24 C -0.175 4.175 25 N -0.535 5.535 26 Si 0.781 3.219 27 H -0.188 1.188 28 H -0.203 1.203 29 H -0.209 1.209 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.210 0.790 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.197 0.803 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.172 -21.479 -4.338 21.944 hybrid contribution -0.181 0.418 1.061 1.155 sum 0.991 -21.061 -3.277 21.337 Atomic orbital electron populations 1.23555 0.74733 1.05809 1.02333 1.86457 1.24826 1.31789 1.83840 1.23588 0.91759 0.81712 0.72572 1.90764 1.67098 1.37203 1.44085 1.20097 0.87364 0.92039 0.97922 0.85945 1.18882 0.98184 0.93443 0.92710 1.21110 0.99061 1.01886 0.90154 1.17288 1.03532 0.89634 0.82656 1.91550 1.94453 1.80664 1.43950 1.17744 1.05406 0.91837 0.83957 1.91538 1.85779 1.82338 1.50776 1.17102 1.01295 0.81256 0.92150 1.91580 1.85460 1.35908 1.96638 1.21183 0.96875 0.93501 0.99264 1.61750 1.13714 1.08151 1.42280 1.22722 0.84283 1.04649 1.00935 1.22904 1.00112 0.96464 0.88865 1.18975 0.80006 0.87528 0.94555 0.96616 1.86518 1.23406 1.86351 1.40993 1.22025 1.39549 0.92428 1.08023 0.92635 1.25845 0.94939 0.98624 0.98141 1.70229 1.44184 1.06523 1.32598 0.85565 0.78219 0.78551 0.79535 1.18786 1.20272 1.20917 0.84370 0.92235 0.92491 0.83339 0.79036 0.90769 0.89773 0.93983 0.90616 0.94348 0.80288 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -7.63 10.48 -51.47 -0.54 -8.17 16 3 C 0.46 12.82 6.80 71.23 0.48 13.30 16 4 O -0.50 -18.76 13.73 21.97 0.30 -18.46 16 5 C 0.14 3.19 2.19 43.42 0.09 3.29 16 6 H 0.12 2.13 8.00 -2.39 -0.02 2.11 16 7 C -0.03 -0.62 3.57 -19.87 -0.07 -0.69 16 8 C -0.10 -2.41 8.15 22.31 0.18 -2.23 16 9 C 0.09 2.08 7.31 22.40 0.16 2.24 16 10 F -0.13 -3.37 17.18 44.97 0.77 -2.59 16 11 C 0.03 0.68 7.31 22.44 0.16 0.85 16 12 F -0.13 -2.99 17.10 44.97 0.77 -2.22 16 13 C 0.10 1.80 7.31 22.40 0.16 1.96 16 14 F -0.12 -2.11 17.18 44.97 0.77 -1.34 16 15 C -0.09 -1.30 9.64 22.31 0.22 -1.08 16 16 N -0.53 -16.91 3.72 -905.95 -3.37 -20.28 16 17 C 0.02 0.57 8.74 127.69 1.12 1.69 16 18 C 0.04 1.70 4.25 86.30 0.37 2.07 16 19 C 0.25 12.48 3.02 29.85 0.09 12.57 16 20 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 21 O -0.57 -27.67 9.80 -148.98 -1.46 -29.13 16 22 C -0.58 -31.93 8.76 25.60 0.22 -31.70 16 23 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 24 C 0.03 1.50 5.40 84.65 0.46 1.96 16 25 N -0.90 -53.94 12.84 21.45 0.28 -53.66 16 26 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 27 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 29 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 30 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.15 4.15 7.72 -2.91 -0.02 4.13 16 34 H 0.19 1.48 8.03 -2.91 -0.02 1.46 16 35 H 0.07 1.74 5.97 -2.39 -0.01 1.73 16 36 H 0.08 2.90 5.60 -2.39 -0.01 2.89 16 37 H 0.04 0.99 8.03 -2.39 -0.02 0.97 16 38 H 0.08 3.17 5.22 -2.39 -0.01 3.15 16 39 H 0.04 1.36 7.95 -2.39 -0.02 1.34 16 40 H 0.35 14.91 9.04 -74.06 -0.67 14.24 16 41 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.33 360.05 4.83 -65.50 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.44 Total: 18.88 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.85 Total: 5.91 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -3.10 Total: -73.95 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -1.70 Total: -55.75 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.31 Total: -6.15 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -70.33 4.83 -65.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930031840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.714 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds