Wall clock time and date at job start Wed Apr 1 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00132 * 2 1 4 4 O 1.20827 * 119.99846 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00151 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47390 * 59.99747 * 5 3 2 7 7 C 1.50704 * 109.46979 * 299.99714 * 5 3 2 8 8 C 1.38226 * 119.95281 * 100.00309 * 7 5 3 9 9 C 1.38430 * 120.04300 * 180.02562 * 8 7 5 10 10 F 1.35099 * 120.02334 * 180.02562 * 9 8 7 11 11 C 1.38605 * 119.95469 * 359.97438 * 9 8 7 12 12 F 1.35095 * 120.04349 * 179.72874 * 11 9 8 13 13 C 1.38595 * 119.91138 * 359.97438 * 11 9 8 14 14 F 1.35101 * 120.02254 * 180.02562 * 13 11 9 15 15 C 1.38222 * 119.95604 * 279.97499 * 7 5 3 16 16 N 1.46903 * 109.47333 * 179.97438 * 5 3 2 17 17 C 1.46903 * 110.99939 * 176.04335 * 16 5 3 18 18 C 1.46893 * 110.99767 * 299.99838 * 16 5 3 19 19 C 1.52998 * 109.47237 * 169.99603 * 18 16 5 20 20 H 1.09003 * 109.46782 * 59.99791 * 19 18 16 21 21 O 1.42902 * 109.47279 * 300.00271 * 19 18 16 22 22 C 1.50701 * 109.47471 * 179.97438 * 19 18 16 23 23 H 1.08003 * 119.99989 * 0.02562 * 22 19 18 24 24 C 1.37872 * 119.99990 * 180.02562 * 22 19 18 25 25 N 1.31523 * 120.00120 * 0.02562 * 24 22 19 26 26 Si 1.86804 * 119.99983 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.46798 * 60.00141 * 26 24 22 28 28 H 1.48504 * 109.46891 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47079 * 300.00238 * 26 24 22 30 30 H 1.08994 * 109.47438 * 60.00327 * 1 2 3 31 31 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46978 * 299.99859 * 1 2 3 33 33 H 1.08002 * 119.98350 * 359.97438 * 8 7 5 34 34 H 1.07999 * 119.97942 * 0.03065 * 15 7 5 35 35 H 1.09004 * 109.46774 * 60.00583 * 17 16 5 36 36 H 1.09001 * 109.46733 * 179.97438 * 17 16 5 37 37 H 1.08997 * 109.46981 * 300.00475 * 17 16 5 38 38 H 1.09004 * 109.47506 * 290.00023 * 18 16 5 39 39 H 1.09003 * 109.47404 * 49.99775 * 18 16 5 40 40 H 0.96692 * 113.99790 * 299.99591 * 21 19 18 41 41 H 0.97003 * 119.99511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1056 0.5915 1.2296 8 6 4.5998 -0.6964 1.1429 9 6 5.0951 -1.3261 2.2719 10 9 5.5786 -2.5848 2.1866 11 6 5.0958 -0.6640 3.4895 12 9 5.5737 -1.2788 4.5935 13 6 4.6008 0.6278 3.5741 14 9 4.6008 1.2755 4.7597 15 6 4.1059 1.2538 2.4429 16 7 3.9829 2.6836 -0.0011 17 6 5.4442 2.8005 0.0930 18 6 3.4742 3.3825 -1.1887 19 6 3.7098 4.8865 -1.0354 20 1 4.7777 5.0780 -0.9307 21 8 3.0247 5.3600 0.1258 22 6 3.1885 5.6035 -2.2541 23 1 2.7341 5.0426 -3.0575 24 6 3.2916 6.9754 -2.3435 25 7 3.8453 7.6584 -1.3654 26 14 2.6447 7.8643 -3.8538 27 1 1.1897 7.6038 -3.9961 28 1 2.8747 9.3239 -3.7055 29 1 3.3561 7.3716 -5.0606 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.5988 -1.2122 0.1941 34 1 3.7192 2.2600 2.5085 35 1 5.9043 2.2997 -0.7589 36 1 5.7253 3.8536 0.0901 37 1 5.7872 2.3349 1.0169 38 1 3.9966 3.0213 -2.0746 39 1 2.4062 3.1909 -1.2935 40 1 2.0680 5.2222 0.1016 41 1 3.9181 8.6236 -1.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930031844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:44 Heat of formation + Delta-G solvation = -214.250608 kcal Electronic energy + Delta-G solvation = -31559.582446 eV Core-core repulsion = 26605.629382 eV Total energy + Delta-G solvation = -4953.953064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96003 -49.36385 -48.64093 -40.94538 -39.30555 -37.51410 -36.14208 -34.90194 -32.07356 -31.81079 -30.84283 -28.77561 -28.35211 -27.13618 -25.53350 -23.72550 -23.26839 -22.68787 -20.70769 -20.07838 -18.51635 -18.27132 -17.86243 -17.38964 -17.13168 -16.94831 -16.65323 -16.27393 -16.08884 -15.65803 -15.26751 -15.12546 -14.98320 -14.83022 -14.55749 -14.53432 -14.25372 -13.92859 -13.66988 -13.13420 -13.08354 -12.92804 -12.86293 -12.36530 -12.30840 -12.04055 -11.91907 -11.90554 -11.36764 -11.14736 -11.00863 -10.87455 -10.80950 -10.70519 -10.06221 -10.00709 -9.20859 -9.09591 -8.92196 -8.54211 -8.18379 -7.88257 -5.99150 -4.17092 0.33565 0.49902 2.15667 2.46891 2.84653 3.08398 3.29113 3.34681 3.36039 3.79080 3.90784 4.01081 4.14560 4.25251 4.44323 4.68710 4.77448 4.95917 5.01943 5.10744 5.13342 5.17914 5.28753 5.42292 5.45442 5.51652 5.65627 5.70010 5.89779 6.06573 6.14566 6.26536 6.32352 6.35956 6.53782 6.86285 7.18726 7.28897 7.75271 7.79751 7.88320 8.21213 8.85714 9.49623 9.66688 11.04933 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003133 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.123930 B = 8934.914765 C = 9755.979155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.459 6.459 5 C 0.133 3.867 6 H 0.089 0.911 7 C -0.032 4.032 8 C -0.116 4.116 9 C 0.095 3.905 10 F -0.120 7.120 11 C 0.035 3.965 12 F -0.119 7.119 13 C 0.097 3.903 14 F -0.117 7.117 15 C -0.099 4.099 16 N -0.509 5.509 17 C 0.023 3.977 18 C 0.014 3.986 19 C 0.244 3.756 20 H 0.053 0.947 21 O -0.553 6.553 22 C -0.574 4.574 23 H 0.052 0.948 24 C 0.081 3.919 25 N -0.858 5.858 26 Si 0.888 3.112 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.025 0.975 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.090 0.910 40 H 0.346 0.654 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -19.795 5.631 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.342 6.342 5 C 0.023 3.977 6 H 0.106 0.894 7 C -0.033 4.033 8 C -0.136 4.136 9 C 0.074 3.926 10 F -0.098 7.098 11 C 0.013 3.987 12 F -0.097 7.097 13 C 0.076 3.924 14 F -0.095 7.095 15 C -0.118 4.118 16 N -0.235 5.235 17 C -0.125 4.125 18 C -0.112 4.112 19 C 0.186 3.814 20 H 0.071 0.929 21 O -0.355 6.355 22 C -0.612 4.612 23 H 0.071 0.929 24 C -0.125 4.125 25 N -0.494 5.494 26 Si 0.715 3.285 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.203 1.203 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.174 0.826 34 H 0.189 0.811 35 H 0.043 0.957 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.190 0.810 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.014 -18.948 6.382 19.993 hybrid contribution -0.516 -0.246 -1.414 1.525 sum -0.530 -19.193 4.968 19.833 Atomic orbital electron populations 1.23259 0.76138 1.03488 1.02851 1.86469 1.23498 1.33377 1.84570 1.23194 0.91066 0.81708 0.73852 1.90717 1.66050 1.35566 1.41883 1.20030 0.88208 0.93590 0.95831 0.89387 1.19063 0.97517 0.92703 0.94040 1.20985 0.99428 0.94842 0.98321 1.17142 1.01604 0.81306 0.92523 1.91563 1.85517 1.36067 1.96692 1.17635 1.05460 0.91998 0.83582 1.91552 1.85854 1.82168 1.50158 1.17315 1.02706 0.89288 0.83052 1.91586 1.94249 1.80368 1.43279 1.21303 0.98564 1.02560 0.89379 1.61969 1.11929 1.05676 1.43884 1.22521 0.85955 1.04155 0.99854 1.23532 1.01112 0.99547 0.87005 1.19224 0.93751 0.83683 0.84753 0.92906 1.86506 1.21428 1.84740 1.42862 1.21585 1.42648 0.92477 1.04491 0.92927 1.24991 0.94248 0.97610 0.95655 1.70069 1.41496 1.06998 1.30816 0.86755 0.79591 0.78666 0.83443 1.20161 1.21196 1.20265 0.91715 0.88243 0.91762 0.82597 0.81113 0.95680 0.89080 0.91948 0.95528 0.89195 0.80998 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.22 10.48 -39.27 -0.41 -4.63 16 3 C 0.46 6.48 6.88 36.00 0.25 6.73 16 4 O -0.46 -7.96 13.63 -18.75 -0.26 -8.21 16 5 C 0.13 1.70 2.19 -70.02 -0.15 1.55 16 6 H 0.09 0.96 8.00 -51.93 -0.42 0.54 16 7 C -0.03 -0.35 3.70 -104.63 -0.39 -0.74 16 8 C -0.12 -1.07 9.64 -39.52 -0.38 -1.46 16 9 C 0.09 0.98 7.31 -39.38 -0.29 0.69 16 10 F -0.12 -1.28 17.18 2.25 0.04 -1.24 16 11 C 0.03 0.40 7.31 -39.31 -0.29 0.11 16 12 F -0.12 -1.48 17.10 2.25 0.04 -1.44 16 13 C 0.10 1.15 7.31 -39.38 -0.29 0.86 16 14 F -0.12 -1.51 17.18 2.25 0.04 -1.47 16 15 C -0.10 -1.18 8.03 -39.52 -0.32 -1.50 16 16 N -0.51 -8.18 3.63 -237.69 -0.86 -9.04 16 17 C 0.02 0.33 8.94 60.07 0.54 0.87 16 18 C 0.01 0.28 4.16 -3.83 -0.02 0.26 16 19 C 0.24 5.98 2.70 -27.88 -0.08 5.90 16 20 H 0.05 1.40 6.47 -51.93 -0.34 1.06 16 21 O -0.55 -14.25 12.60 -35.23 -0.44 -14.70 16 22 C -0.57 -15.50 8.76 -34.44 -0.30 -15.81 16 23 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 24 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 25 N -0.86 -25.11 12.84 55.43 0.71 -24.40 16 26 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.16 1.07 8.03 -52.49 -0.42 0.65 16 34 H 0.17 2.28 7.71 -52.49 -0.40 1.88 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 1.56 6.30 -51.93 -0.33 1.23 16 37 H 0.06 0.79 6.11 -51.93 -0.32 0.47 16 38 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.09 1.84 5.21 -51.93 -0.27 1.57 16 40 H 0.35 8.46 9.04 45.56 0.41 8.87 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -31.21 362.00 -5.19 -36.39 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.73 Total: 6.27 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.74 Total: 1.01 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.15 Total: -33.44 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.11 Total: -27.54 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.12 Total: -4.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.21 -5.19 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930031844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.857 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds