Wall clock time and date at job start Wed Apr 1 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00132 * 2 1 4 4 O 1.20827 * 119.99846 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00151 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47390 * 59.99747 * 5 3 2 7 7 C 1.50704 * 109.46979 * 299.99714 * 5 3 2 8 8 C 1.38226 * 119.95281 * 100.00309 * 7 5 3 9 9 C 1.38430 * 120.04300 * 180.02562 * 8 7 5 10 10 F 1.35099 * 120.02334 * 180.02562 * 9 8 7 11 11 C 1.38605 * 119.95469 * 359.97438 * 9 8 7 12 12 F 1.35095 * 120.04349 * 179.72874 * 11 9 8 13 13 C 1.38595 * 119.91138 * 359.97438 * 11 9 8 14 14 F 1.35101 * 120.02254 * 180.02562 * 13 11 9 15 15 C 1.38222 * 119.95604 * 279.97499 * 7 5 3 16 16 N 1.46903 * 109.47333 * 179.97438 * 5 3 2 17 17 C 1.46903 * 110.99939 * 176.04335 * 16 5 3 18 18 C 1.46893 * 110.99767 * 299.99838 * 16 5 3 19 19 C 1.52998 * 109.47237 * 169.99603 * 18 16 5 20 20 H 1.09003 * 109.46782 * 59.99791 * 19 18 16 21 21 O 1.42902 * 109.47279 * 300.00271 * 19 18 16 22 22 C 1.50701 * 109.47471 * 179.97438 * 19 18 16 23 23 H 1.08003 * 119.99989 * 0.02562 * 22 19 18 24 24 C 1.37872 * 119.99990 * 180.02562 * 22 19 18 25 25 N 1.31523 * 120.00120 * 0.02562 * 24 22 19 26 26 Si 1.86804 * 119.99983 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.46798 * 60.00141 * 26 24 22 28 28 H 1.48504 * 109.46891 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47079 * 300.00238 * 26 24 22 30 30 H 1.08994 * 109.47438 * 60.00327 * 1 2 3 31 31 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46978 * 299.99859 * 1 2 3 33 33 H 1.08002 * 119.98350 * 359.97438 * 8 7 5 34 34 H 1.07999 * 119.97942 * 0.03065 * 15 7 5 35 35 H 1.09004 * 109.46774 * 60.00583 * 17 16 5 36 36 H 1.09001 * 109.46733 * 179.97438 * 17 16 5 37 37 H 1.08997 * 109.46981 * 300.00475 * 17 16 5 38 38 H 1.09004 * 109.47506 * 290.00023 * 18 16 5 39 39 H 1.09003 * 109.47404 * 49.99775 * 18 16 5 40 40 H 0.96692 * 113.99790 * 299.99591 * 21 19 18 41 41 H 0.97003 * 119.99511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1056 0.5915 1.2296 8 6 4.5998 -0.6964 1.1429 9 6 5.0951 -1.3261 2.2719 10 9 5.5786 -2.5848 2.1866 11 6 5.0958 -0.6640 3.4895 12 9 5.5737 -1.2788 4.5935 13 6 4.6008 0.6278 3.5741 14 9 4.6008 1.2755 4.7597 15 6 4.1059 1.2538 2.4429 16 7 3.9829 2.6836 -0.0011 17 6 5.4442 2.8005 0.0930 18 6 3.4742 3.3825 -1.1887 19 6 3.7098 4.8865 -1.0354 20 1 4.7777 5.0780 -0.9307 21 8 3.0247 5.3600 0.1258 22 6 3.1885 5.6035 -2.2541 23 1 2.7341 5.0426 -3.0575 24 6 3.2916 6.9754 -2.3435 25 7 3.8453 7.6584 -1.3654 26 14 2.6447 7.8643 -3.8538 27 1 1.1897 7.6038 -3.9961 28 1 2.8747 9.3239 -3.7055 29 1 3.3561 7.3716 -5.0606 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.5988 -1.2122 0.1941 34 1 3.7192 2.2600 2.5085 35 1 5.9043 2.2997 -0.7589 36 1 5.7253 3.8536 0.0901 37 1 5.7872 2.3349 1.0169 38 1 3.9966 3.0213 -2.0746 39 1 2.4062 3.1909 -1.2935 40 1 2.0680 5.2222 0.1016 41 1 3.9181 8.6236 -1.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930031844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:43 Heat of formation + Delta-G solvation = -235.136074 kcal Electronic energy + Delta-G solvation = -31560.488108 eV Core-core repulsion = 26605.629382 eV Total energy + Delta-G solvation = -4954.858726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.87542 -50.26358 -49.56394 -42.00274 -40.25469 -38.80172 -37.39002 -36.53084 -34.16566 -32.96054 -31.72868 -30.09259 -29.69294 -28.06549 -27.18234 -24.87999 -24.46869 -23.68278 -22.11541 -21.41699 -19.46432 -19.23199 -19.05422 -18.75862 -18.30313 -17.95044 -17.68356 -17.33121 -17.09327 -16.64731 -16.55823 -16.41283 -16.27974 -16.04234 -15.98670 -15.60117 -15.48940 -15.23802 -14.91722 -14.47111 -14.37692 -14.25027 -13.94236 -13.61150 -13.27564 -13.11249 -12.99469 -12.91817 -12.79833 -12.79109 -12.74069 -12.46871 -12.36135 -11.98071 -11.72374 -11.38661 -10.85440 -10.61366 -10.10243 -10.05664 -9.94254 -9.26358 -8.09765 -6.34702 -0.55950 -0.35427 1.09855 1.41453 1.43108 1.50812 1.52464 1.94755 2.20119 2.40370 2.80809 2.99494 3.08508 3.16224 3.18350 3.32681 3.77567 3.86958 4.04168 4.19372 4.27529 4.32789 4.35444 4.36922 4.38719 4.51468 4.63192 4.65985 4.72041 4.75059 4.79948 5.00948 5.06440 5.12132 5.37564 5.44116 5.62101 5.78598 5.89358 6.08697 6.18332 6.74558 6.77649 7.38680 7.66036 8.94251 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003133 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.123930 B = 8934.914765 C = 9755.979155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.464 3.536 4 O -0.501 6.501 5 C 0.136 3.864 6 H 0.122 0.878 7 C -0.032 4.032 8 C -0.090 4.090 9 C 0.101 3.899 10 F -0.118 7.118 11 C 0.032 3.968 12 F -0.126 7.126 13 C 0.089 3.911 14 F -0.128 7.128 15 C -0.101 4.101 16 N -0.525 5.525 17 C 0.027 3.973 18 C 0.036 3.964 19 C 0.242 3.758 20 H 0.027 0.973 21 O -0.568 6.568 22 C -0.587 4.587 23 H 0.056 0.944 24 C 0.028 3.972 25 N -0.898 5.898 26 Si 0.955 3.045 27 H -0.271 1.271 28 H -0.286 1.286 29 H -0.266 1.266 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.192 0.808 34 H 0.151 0.849 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.349 0.651 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -22.318 4.206 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.306 3.694 4 O -0.387 6.387 5 C 0.027 3.973 6 H 0.139 0.861 7 C -0.033 4.033 8 C -0.109 4.109 9 C 0.081 3.919 10 F -0.096 7.096 11 C 0.010 3.990 12 F -0.105 7.105 13 C 0.068 3.932 14 F -0.106 7.106 15 C -0.120 4.120 16 N -0.250 5.250 17 C -0.120 4.120 18 C -0.091 4.091 19 C 0.184 3.816 20 H 0.045 0.955 21 O -0.371 6.371 22 C -0.626 4.626 23 H 0.074 0.926 24 C -0.175 4.175 25 N -0.535 5.535 26 Si 0.780 3.220 27 H -0.196 1.196 28 H -0.211 1.211 29 H -0.191 1.191 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.209 0.791 34 H 0.169 0.831 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.193 0.807 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.149 -21.514 4.954 22.078 hybrid contribution -0.494 0.437 -0.912 1.125 sum -0.643 -21.077 4.042 21.471 Atomic orbital electron populations 1.23550 0.74667 1.05765 1.02401 1.86459 1.24871 1.31827 1.83851 1.23466 0.91551 0.81758 0.72647 1.90709 1.66974 1.37025 1.44018 1.20068 0.87719 0.91673 0.97882 0.86104 1.18885 0.98258 0.93405 0.92762 1.21183 0.96863 0.93573 0.99233 1.17109 1.01363 0.81246 0.92181 1.91578 1.85475 1.35953 1.96635 1.17756 1.05447 0.91841 0.83917 1.91534 1.85976 1.82221 1.50732 1.17301 1.03577 0.89605 0.82674 1.91554 1.94451 1.80686 1.43932 1.21129 0.98941 1.01923 0.90048 1.61692 1.12777 1.08222 1.42324 1.22455 0.85258 1.02472 1.01814 1.22996 1.00939 0.96498 0.88642 1.19133 0.91972 0.87041 0.83478 0.95545 1.86466 1.21674 1.85410 1.43514 1.22025 1.42109 0.93067 1.05366 0.92618 1.25836 0.94461 0.98595 0.98559 1.70213 1.43156 1.07122 1.33038 0.85682 0.79106 0.77237 0.79948 1.19571 1.21114 1.19112 0.92155 0.84561 0.92351 0.79106 0.83096 0.93539 0.92466 0.89950 0.94815 0.89926 0.80728 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -7.32 10.48 -51.44 -0.54 -7.86 16 3 C 0.46 12.28 6.88 71.23 0.49 12.77 16 4 O -0.50 -17.31 13.63 21.96 0.30 -17.01 16 5 C 0.14 3.15 2.19 43.42 0.09 3.24 16 6 H 0.12 2.09 8.00 -2.39 -0.02 2.07 16 7 C -0.03 -0.62 3.70 -19.87 -0.07 -0.70 16 8 C -0.09 -1.29 9.64 22.31 0.22 -1.08 16 9 C 0.10 1.78 7.31 22.40 0.16 1.94 16 10 F -0.12 -2.12 17.18 44.97 0.77 -1.35 16 11 C 0.03 0.67 7.31 22.44 0.16 0.84 16 12 F -0.13 -2.99 17.10 44.97 0.77 -2.22 16 13 C 0.09 2.04 7.31 22.40 0.16 2.21 16 14 F -0.13 -3.34 17.18 44.97 0.77 -2.57 16 15 C -0.10 -2.33 8.03 22.31 0.18 -2.15 16 16 N -0.52 -16.50 3.63 -905.92 -3.29 -19.79 16 17 C 0.03 0.77 8.94 127.69 1.14 1.91 16 18 C 0.04 1.41 4.16 86.30 0.36 1.77 16 19 C 0.24 12.14 2.70 29.85 0.08 12.22 16 20 H 0.03 1.47 6.47 -2.39 -0.02 1.46 16 21 O -0.57 -30.36 12.60 -148.98 -1.88 -32.24 16 22 C -0.59 -32.12 8.76 25.60 0.22 -31.90 16 23 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 24 C 0.03 1.56 5.40 84.65 0.46 2.02 16 25 N -0.90 -53.82 12.84 21.45 0.28 -53.55 16 26 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 33 H 0.19 1.48 8.03 -2.91 -0.02 1.45 16 34 H 0.15 4.15 7.71 -2.91 -0.02 4.12 16 35 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 2.02 6.30 -2.39 -0.02 2.01 16 37 H 0.08 1.98 6.11 -2.39 -0.01 1.96 16 38 H 0.03 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.08 3.38 5.21 -2.39 -0.01 3.37 16 40 H 0.35 17.75 9.04 -74.06 -0.67 17.08 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.11 362.00 4.50 -64.61 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.44 Total: 21.87 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.86 Total: 4.77 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -3.02 Total: -73.34 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -2.12 Total: -57.10 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 2.31 Total: -6.13 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.11 4.50 -64.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930031844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.528 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds