Wall clock time and date at job start Wed Apr 1 2020 04:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99839 * 2 1 4 4 O 1.20822 * 120.00328 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99708 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47778 * 300.00280 * 5 3 2 7 7 N 1.46899 * 109.47201 * 179.97438 * 5 3 2 8 8 C 1.46905 * 110.99966 * 85.00153 * 7 5 3 9 9 C 1.52996 * 109.47050 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47520 * 59.99838 * 9 8 7 11 11 O 1.42908 * 109.47139 * 299.99795 * 9 8 7 12 12 C 1.50697 * 109.47243 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99822 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00549 * 179.97438 * 12 9 8 15 15 N 1.31523 * 119.99487 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 120.00229 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47152 * 60.00289 * 16 14 12 18 18 H 1.48496 * 109.46985 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47395 * 300.00347 * 16 14 12 20 20 C 1.50706 * 109.47183 * 59.99999 * 5 3 2 21 21 C 1.38234 * 120.00196 * 260.00153 * 20 5 3 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 5 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.50696 * 120.00309 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47316 * 89.99999 * 24 23 22 26 26 F 1.39901 * 109.47549 * 210.00124 * 24 23 22 27 27 F 1.39900 * 109.47190 * 330.00019 * 24 23 22 28 28 C 1.38243 * 120.00092 * 359.97438 * 23 22 21 29 29 C 1.38234 * 119.99618 * 359.97438 * 28 23 22 30 30 H 1.09000 * 109.47467 * 59.99812 * 1 2 3 31 31 H 1.09002 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47560 * 300.00486 * 1 2 3 33 33 H 1.00904 * 111.00108 * 208.95731 * 7 5 3 34 34 H 1.08998 * 109.46932 * 299.99954 * 8 7 5 35 35 H 1.09000 * 109.46576 * 59.99970 * 8 7 5 36 36 H 0.96690 * 114.00031 * 300.00375 * 11 9 8 37 37 H 0.96994 * 119.99594 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 5 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00235 * 179.97438 * 28 23 22 41 41 H 1.08005 * 119.99804 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 7 3.9828 2.6836 -0.0002 8 6 4.0169 3.2232 1.3658 9 6 4.4534 4.6890 1.3243 10 1 3.7460 5.2620 0.7248 11 8 5.7555 4.7820 0.7427 12 6 4.4878 5.2427 2.7254 13 1 4.2243 4.6123 3.5618 14 6 4.8558 6.5541 2.9396 15 7 5.1762 7.3219 1.9210 16 14 4.8977 7.2406 4.6763 17 1 5.8604 6.4598 5.4942 18 1 5.3227 8.6629 4.6362 19 1 3.5441 7.1447 5.2794 20 6 4.1056 0.5914 -1.2296 21 6 4.6000 -0.6966 -1.1440 22 6 5.0942 -1.3236 -2.2725 23 6 5.0935 -0.6628 -3.4866 24 6 5.6328 -1.3461 -4.7168 25 9 4.5988 -2.0369 -5.3577 26 9 6.1635 -0.3883 -5.5875 27 9 6.6368 -2.2475 -4.3472 28 6 4.5981 0.6249 -3.5725 29 6 4.1029 1.2516 -2.4442 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.8759 2.7963 -0.4559 34 1 3.0237 3.1526 1.8092 35 1 4.7240 2.6499 1.9653 36 1 6.4373 4.2947 1.2250 37 1 5.4347 8.2446 2.0717 38 1 4.5960 -1.2146 -0.1963 39 1 5.4808 -2.3298 -2.2055 40 1 4.5980 1.1414 -4.5210 41 1 3.7163 2.2578 -2.5111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932998201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:30 Heat of formation + Delta-G solvation = -274.296899 kcal Electronic energy + Delta-G solvation = -30486.948760 eV Core-core repulsion = 25530.391894 eV Total energy + Delta-G solvation = -4956.556867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.17863 -48.69213 -48.64649 -41.79023 -40.41216 -38.55221 -37.47285 -36.30061 -34.25183 -33.32296 -32.16184 -30.56401 -29.24493 -27.92641 -26.20937 -25.45682 -23.96707 -23.05912 -22.33531 -21.50247 -19.54504 -19.48200 -19.40076 -19.07449 -18.80378 -17.83099 -17.65512 -16.92264 -16.65116 -16.43331 -16.11596 -16.05973 -15.72575 -15.50576 -15.45308 -15.12218 -15.08050 -14.89175 -14.82105 -14.79693 -14.65177 -14.34876 -14.29327 -14.13855 -13.81808 -13.42522 -13.11681 -13.02115 -12.90212 -12.76413 -12.59835 -12.35954 -12.20463 -12.04779 -11.78103 -11.68123 -11.06605 -10.70025 -10.27921 -10.10472 -10.08290 -9.47895 -8.13189 -6.39210 -0.26192 0.24638 1.16371 1.40983 1.43067 1.50969 1.60949 1.63289 2.35642 2.41151 2.68525 3.00601 3.12185 3.16783 3.37679 3.41009 3.78286 3.84593 3.89037 4.06529 4.28252 4.29141 4.31762 4.32623 4.39116 4.46261 4.49871 4.60457 4.69653 4.91792 5.04321 5.06925 5.12447 5.32103 5.34872 5.62794 5.64180 5.68678 5.90891 6.06977 6.37398 6.73650 6.78644 7.34058 7.56824 8.91307 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.002674 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.375438 B =10468.471517 C =11928.116501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.515 6.515 5 C 0.139 3.861 6 H 0.114 0.886 7 N -0.673 5.673 8 C 0.058 3.942 9 C 0.238 3.762 10 H 0.017 0.983 11 O -0.575 6.575 12 C -0.588 4.588 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.960 3.040 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.067 4.067 21 C -0.089 4.089 22 C -0.067 4.067 23 C -0.184 4.184 24 C 0.513 3.487 25 F -0.180 7.180 26 F -0.181 7.181 27 F -0.176 7.176 28 C -0.074 4.074 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.363 0.637 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.356 0.644 37 H 0.261 0.739 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.146 0.854 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -23.815 -9.080 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.402 6.402 5 C 0.028 3.972 6 H 0.131 0.869 7 N -0.309 5.309 8 C -0.071 4.071 9 C 0.180 3.820 10 H 0.035 0.965 11 O -0.379 6.379 12 C -0.627 4.627 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.067 4.067 21 C -0.107 4.107 22 C -0.085 4.085 23 C -0.186 4.186 24 C 0.459 3.541 25 F -0.161 7.161 26 F -0.162 7.162 27 F -0.157 7.157 28 C -0.092 4.092 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.187 0.813 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.201 0.799 37 H 0.070 0.930 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.662 -22.745 -9.754 24.891 hybrid contribution 0.633 0.328 1.202 1.398 sum -2.029 -22.417 -8.552 24.078 Atomic orbital electron populations 1.23523 0.75026 1.05711 1.02160 1.86471 1.24673 1.32222 1.83969 1.23934 0.92099 0.81422 0.72069 1.90698 1.67143 1.37637 1.44741 1.19948 0.87513 0.90976 0.98755 0.86861 1.59869 1.37295 1.13749 1.19956 1.22516 0.99915 0.97230 0.87423 1.19100 0.81552 0.89584 0.91774 0.96492 1.86536 1.19525 1.76726 1.55079 1.21983 1.48999 0.97496 0.94181 0.92122 1.25909 0.93666 0.97257 1.00886 1.70220 1.43840 1.07134 1.32330 0.85603 0.78809 0.77260 0.79840 1.18769 1.21103 1.19680 1.19710 0.98587 0.95361 0.93067 1.21282 0.96382 0.92820 1.00261 1.21171 0.96298 1.00906 0.90128 1.20117 1.07731 0.97110 0.93631 1.18268 0.75541 0.76620 0.83680 1.93222 1.58810 1.80480 1.83612 1.93195 1.86944 1.63982 1.72115 1.93192 1.62083 1.69044 1.91391 1.21032 0.95308 0.93014 0.99857 1.21131 0.98897 1.00692 0.91735 0.92524 0.84467 0.92431 0.81347 0.92761 0.93813 0.79941 0.93002 0.81625 0.81947 0.83600 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -8.40 10.48 -51.44 -0.54 -8.94 16 3 C 0.46 13.76 7.11 71.23 0.51 14.27 16 4 O -0.52 -19.83 15.67 21.98 0.34 -19.49 16 5 C 0.14 3.61 2.73 43.42 0.12 3.72 16 6 H 0.11 2.41 7.66 -2.39 -0.02 2.39 16 7 N -0.67 -22.63 5.23 -499.35 -2.61 -25.24 16 8 C 0.06 2.30 5.02 86.30 0.43 2.73 16 9 C 0.24 12.10 3.10 29.85 0.09 12.19 16 10 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 11 O -0.57 -28.44 12.07 -148.98 -1.80 -30.23 16 12 C -0.59 -32.15 8.76 25.60 0.22 -31.92 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.03 1.42 5.40 84.65 0.46 1.88 16 15 N -0.90 -54.03 12.84 21.45 0.28 -53.75 16 16 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C -0.07 -1.42 4.63 -19.86 -0.09 -1.51 16 21 C -0.09 -1.38 9.67 22.27 0.22 -1.17 16 22 C -0.07 -0.99 9.40 22.27 0.21 -0.78 16 23 C -0.18 -3.29 5.45 -19.87 -0.11 -3.40 16 24 C 0.51 9.15 3.36 71.23 0.24 9.39 16 25 F -0.18 -3.37 17.30 44.97 0.78 -2.59 16 26 F -0.18 -3.54 16.46 44.97 0.74 -2.80 16 27 F -0.18 -3.04 16.46 44.97 0.74 -2.30 16 28 C -0.07 -1.46 9.40 22.27 0.21 -1.25 16 29 C -0.11 -2.43 9.01 22.27 0.20 -2.23 16 30 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.36 11.78 7.38 -89.69 -0.66 11.12 16 34 H 0.05 2.31 7.62 -2.39 -0.02 2.29 16 35 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 36 H 0.36 15.06 9.04 -74.06 -0.67 14.39 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.17 1.64 8.04 -2.91 -0.02 1.62 16 39 H 0.16 1.56 7.60 -2.91 -0.02 1.54 16 40 H 0.15 2.53 7.60 -2.91 -0.02 2.50 16 41 H 0.13 3.43 7.72 -2.91 -0.02 3.40 16 Total: -1.00 -71.17 370.31 3.63 -67.54 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.23 Total: 28.90 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 3.90 Total: 3.66 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.34 Total: -78.99 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -1.99 Total: -58.67 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 2.26 Total: -7.69 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.17 3.63 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932998201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.755 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds