Wall clock time and date at job start Wed Apr 1 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00068 * 2 1 4 4 C 1.39220 * 111.00095 * 123.95431 * 2 1 3 5 5 C 1.37799 * 119.89751 * 299.98022 * 4 2 1 6 6 C 1.38711 * 120.45353 * 180.02562 * 5 4 2 7 7 C 1.37527 * 120.28878 * 359.97438 * 6 5 4 8 8 C 1.39843 * 120.50353 * 0.02562 * 7 6 5 9 9 S 1.76028 * 130.48560 * 180.27502 * 8 7 6 10 10 C 1.75484 * 91.60452 * 180.02562 * 9 8 7 11 11 C 1.46833 * 124.67867 * 179.97438 * 10 9 8 12 12 O 1.21673 * 120.00170 * 179.69674 * 11 10 9 13 13 N 1.34777 * 119.99617 * 359.69350 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72433 * 13 11 10 15 15 C 1.50703 * 109.47138 * 180.28062 * 14 13 11 16 16 O 1.21293 * 120.00086 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00069 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00084 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99944 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00276 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47237 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47068 * 120.00289 * 22 20 18 25 25 H 1.48497 * 109.46988 * 240.00248 * 22 20 18 26 26 C 1.33781 * 110.64468 * 359.67863 * 10 9 8 27 27 C 1.40019 * 119.98665 * 359.97438 * 8 7 6 28 28 H 1.08998 * 109.47056 * 296.04524 * 1 2 3 29 29 H 1.09006 * 109.47030 * 56.04254 * 1 2 3 30 30 H 1.08997 * 109.47370 * 176.04332 * 1 2 3 31 31 H 1.09003 * 109.47029 * 183.95287 * 3 2 1 32 32 H 1.09002 * 109.47442 * 303.95495 * 3 2 1 33 33 H 1.09006 * 109.46885 * 63.95371 * 3 2 1 34 34 H 1.07999 * 119.77401 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.85495 * 179.97438 * 6 5 4 36 36 H 1.07994 * 119.74724 * 179.97438 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 38 38 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 39 39 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 40 40 H 0.97002 * 120.00050 * 359.97438 * 17 15 14 41 41 H 0.96997 * 119.99888 * 179.97438 * 21 20 18 42 42 H 1.08005 * 122.20199 * 180.22316 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9680 -0.7259 1.0781 5 6 1.6568 -0.3453 2.3654 6 6 2.1481 -1.0599 3.4480 7 6 2.9516 -2.1578 3.2474 8 6 3.2838 -2.5671 1.9521 9 16 4.2706 -3.9151 1.3973 10 6 4.0072 -3.4807 -0.2824 11 6 4.5645 -4.2070 -1.4304 12 8 4.3219 -3.8334 -2.5627 13 7 5.3449 -5.2874 -1.2299 14 6 5.8960 -6.0156 -2.3754 15 6 6.7207 -7.1768 -1.8829 16 8 6.8371 -7.3762 -0.6921 17 7 7.3298 -7.9932 -2.7655 18 6 8.0805 -9.0493 -2.3174 19 1 8.1841 -9.2268 -1.2572 20 6 8.7080 -9.8912 -3.2275 21 7 8.5823 -9.6749 -4.5175 22 14 9.7314 -11.3298 -2.6169 23 1 9.7148 -11.3542 -1.1322 24 1 9.1629 -12.5985 -3.1387 25 1 11.1296 -11.1805 -3.0944 26 6 3.2234 -2.4004 -0.3729 27 6 2.7969 -1.8577 0.8475 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7044 1.8723 0.9234 34 1 1.0269 0.5159 2.5326 35 1 1.8985 -0.7527 4.4528 36 1 3.3296 -2.7075 4.0966 37 1 5.5381 -5.5854 -0.3272 38 1 5.0807 -6.3867 -2.9965 39 1 6.5248 -5.3467 -2.9628 40 1 7.2370 -7.8335 -3.7178 41 1 9.0207 -10.2625 -5.1527 42 1 2.9384 -1.9740 -1.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935961778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:01 Heat of formation + Delta-G solvation = -13.431164 kcal Electronic energy + Delta-G solvation = -26323.021007 eV Core-core repulsion = 22394.678490 eV Total energy + Delta-G solvation = -3928.342517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60233 -39.60694 -38.17595 -37.25716 -35.28645 -34.49672 -33.72690 -31.40751 -30.36077 -30.00270 -27.99988 -27.80174 -25.20100 -24.87319 -24.06263 -22.18082 -21.17976 -20.09291 -19.49037 -18.51039 -18.05341 -17.22344 -16.36806 -16.25850 -15.77582 -15.53621 -15.33520 -15.32262 -15.14322 -14.63830 -14.41289 -14.22737 -14.10807 -13.89814 -13.49443 -13.41553 -13.06771 -12.77815 -12.62004 -12.26960 -12.24318 -12.10266 -12.03128 -11.65590 -11.63221 -11.34340 -11.14662 -10.96149 -10.41241 -10.33645 -10.03743 -9.82209 -9.65970 -8.99882 -8.95314 -8.72949 -8.65867 -8.11460 -7.90260 -6.52449 -3.94404 0.09536 0.78528 1.22562 1.68804 1.81017 3.09328 3.11928 3.17373 3.23218 3.30502 3.37581 3.42215 3.72108 4.10228 4.43639 4.51183 4.60833 4.76084 4.83328 4.86928 4.88513 4.98506 5.10250 5.10761 5.15562 5.15977 5.38959 5.48065 5.48845 5.64580 5.71329 5.85920 5.91724 5.98182 6.03299 6.04432 6.12610 6.21792 6.41899 6.54023 6.95320 7.45617 7.64833 7.90623 8.25994 8.43808 9.03547 9.37613 9.85291 10.64436 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.001992 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.841649 B =14055.003187 C =14980.813152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.514 5.514 3 C 0.029 3.971 4 C 0.141 3.859 5 C -0.157 4.157 6 C -0.085 4.085 7 C -0.088 4.088 8 C -0.128 4.128 9 S 0.139 5.861 10 C -0.220 4.220 11 C 0.585 3.415 12 O -0.532 6.532 13 N -0.700 5.700 14 C 0.109 3.891 15 C 0.427 3.573 16 O -0.596 6.596 17 N -0.548 5.548 18 C -0.304 4.304 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.029 4.029 27 C -0.063 4.063 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.410 0.590 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 20.734 12.370 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.235 5.235 3 C -0.118 4.118 4 C 0.045 3.955 5 C -0.179 4.179 6 C -0.108 4.108 7 C -0.111 4.111 8 C -0.245 4.245 9 S 0.406 5.594 10 C -0.339 4.339 11 C 0.369 3.631 12 O -0.411 6.411 13 N -0.354 5.354 14 C -0.019 4.019 15 C 0.213 3.787 16 O -0.483 6.483 17 N -0.182 5.182 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.061 4.061 27 C -0.073 4.073 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.248 0.752 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.212 19.256 12.342 26.927 hybrid contribution -0.476 0.691 0.057 0.841 sum -14.689 19.946 12.399 27.701 Atomic orbital electron populations 1.22492 0.85322 1.03052 1.00995 1.59326 1.08722 1.14335 1.41079 1.22488 1.01363 0.86948 1.00990 1.18574 0.95110 0.92812 0.88987 1.21377 1.02554 1.01353 0.92659 1.20913 0.96455 0.94484 0.98903 1.20497 0.99007 0.97537 0.94017 1.23042 1.03492 1.00566 0.97375 1.84503 1.50755 1.27324 0.96798 1.23720 1.09049 1.03751 0.97353 1.16953 0.78686 0.80123 0.87302 1.90823 1.60219 1.67379 1.22645 1.45581 1.49890 1.28468 1.11419 1.21027 0.98442 0.94054 0.88335 1.19692 0.85816 0.85987 0.87237 1.90504 1.66826 1.74952 1.15986 1.41792 1.42896 1.24945 1.08615 1.19787 1.25093 1.03645 0.94841 0.87568 1.25340 0.98104 0.99410 0.94915 1.69621 1.43741 1.39174 1.00854 0.85748 0.78987 0.80114 0.79187 1.19109 1.20607 1.20602 1.20154 0.93726 0.92929 0.99277 1.17942 1.00809 0.96815 0.91724 0.94969 0.90567 0.90898 0.90888 0.90558 0.94986 0.85669 0.85044 0.85124 0.75193 0.89392 0.89381 0.76987 0.91613 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.33 60.07 0.56 0.75 16 2 N -0.51 -4.55 4.81 -186.27 -0.90 -5.45 16 3 C 0.03 0.20 9.37 60.06 0.56 0.76 16 4 C 0.14 1.40 4.80 -83.16 -0.40 1.00 16 5 C -0.16 -1.24 8.50 -39.57 -0.34 -1.58 16 6 C -0.09 -0.63 10.02 -39.67 -0.40 -1.02 16 7 C -0.09 -0.78 10.06 -39.24 -0.39 -1.18 16 8 C -0.13 -1.45 6.49 -38.31 -0.25 -1.70 16 9 S 0.14 1.75 22.26 -107.50 -2.39 -0.64 16 10 C -0.22 -3.23 6.32 -37.67 -0.24 -3.47 16 11 C 0.58 10.11 7.79 -12.78 -0.10 10.01 16 12 O -0.53 -10.40 16.72 5.21 0.09 -10.31 16 13 N -0.70 -12.49 5.52 -62.75 -0.35 -12.84 16 14 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 15 C 0.43 9.89 7.85 -10.98 -0.09 9.81 16 16 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 17 N -0.55 -13.62 5.29 -10.96 -0.06 -13.67 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 22 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.03 -0.39 9.59 -40.41 -0.39 -0.78 16 27 C -0.06 -0.76 5.87 -106.98 -0.63 -1.39 16 28 H 0.03 0.18 7.08 -51.93 -0.37 -0.19 16 29 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.03 0.18 7.30 -51.93 -0.38 -0.19 16 34 H 0.13 0.75 6.92 -52.49 -0.36 0.38 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.41 7.31 6.48 -40.82 -0.26 7.04 16 38 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.16 2.19 7.96 -52.48 -0.42 1.77 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -31.78 375.12 -9.54 -41.32 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.00 Total: 13.50 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -2.36 Total: 5.38 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.58 Total: -55.09 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.17 Total: -25.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.78 -9.54 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935961778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.889 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds