Wall clock time and date at job start Wed Apr 1 2020 04:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00068 * 2 1 4 4 C 1.39220 * 111.00095 * 123.95431 * 2 1 3 5 5 C 1.37799 * 119.89751 * 299.98022 * 4 2 1 6 6 C 1.38711 * 120.45353 * 180.02562 * 5 4 2 7 7 C 1.37527 * 120.28878 * 359.97438 * 6 5 4 8 8 C 1.39843 * 120.50353 * 0.02562 * 7 6 5 9 9 S 1.76028 * 130.48560 * 180.27502 * 8 7 6 10 10 C 1.75484 * 91.60452 * 180.02562 * 9 8 7 11 11 C 1.46833 * 124.67867 * 179.97438 * 10 9 8 12 12 O 1.21673 * 120.00170 * 179.69674 * 11 10 9 13 13 N 1.34777 * 119.99617 * 359.69350 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72433 * 13 11 10 15 15 C 1.50703 * 109.47138 * 180.28062 * 14 13 11 16 16 O 1.21293 * 120.00086 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00069 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00084 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99944 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00276 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47237 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47068 * 120.00289 * 22 20 18 25 25 H 1.48497 * 109.46988 * 240.00248 * 22 20 18 26 26 C 1.33781 * 110.64468 * 359.67863 * 10 9 8 27 27 C 1.40019 * 119.98665 * 359.97438 * 8 7 6 28 28 H 1.08998 * 109.47056 * 296.04524 * 1 2 3 29 29 H 1.09006 * 109.47030 * 56.04254 * 1 2 3 30 30 H 1.08997 * 109.47370 * 176.04332 * 1 2 3 31 31 H 1.09003 * 109.47029 * 183.95287 * 3 2 1 32 32 H 1.09002 * 109.47442 * 303.95495 * 3 2 1 33 33 H 1.09006 * 109.46885 * 63.95371 * 3 2 1 34 34 H 1.07999 * 119.77401 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.85495 * 179.97438 * 6 5 4 36 36 H 1.07994 * 119.74724 * 179.97438 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 38 38 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 39 39 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 40 40 H 0.97002 * 120.00050 * 359.97438 * 17 15 14 41 41 H 0.96997 * 119.99888 * 179.97438 * 21 20 18 42 42 H 1.08005 * 122.20199 * 180.22316 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9680 -0.7259 1.0781 5 6 1.6568 -0.3453 2.3654 6 6 2.1481 -1.0599 3.4480 7 6 2.9516 -2.1578 3.2474 8 6 3.2838 -2.5671 1.9521 9 16 4.2706 -3.9151 1.3973 10 6 4.0072 -3.4807 -0.2824 11 6 4.5645 -4.2070 -1.4304 12 8 4.3219 -3.8334 -2.5627 13 7 5.3449 -5.2874 -1.2299 14 6 5.8960 -6.0156 -2.3754 15 6 6.7207 -7.1768 -1.8829 16 8 6.8371 -7.3762 -0.6921 17 7 7.3298 -7.9932 -2.7655 18 6 8.0805 -9.0493 -2.3174 19 1 8.1841 -9.2268 -1.2572 20 6 8.7080 -9.8912 -3.2275 21 7 8.5823 -9.6749 -4.5175 22 14 9.7314 -11.3298 -2.6169 23 1 9.7148 -11.3542 -1.1322 24 1 9.1629 -12.5985 -3.1387 25 1 11.1296 -11.1805 -3.0944 26 6 3.2234 -2.4004 -0.3729 27 6 2.7969 -1.8577 0.8475 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7044 1.8723 0.9234 34 1 1.0269 0.5159 2.5326 35 1 1.8985 -0.7527 4.4528 36 1 3.3296 -2.7075 4.0966 37 1 5.5381 -5.5854 -0.3272 38 1 5.0807 -6.3867 -2.9965 39 1 6.5248 -5.3467 -2.9628 40 1 7.2370 -7.8335 -3.7178 41 1 9.0207 -10.2625 -5.1527 42 1 2.9384 -1.9740 -1.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935961778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:00 Heat of formation + Delta-G solvation = -35.309109 kcal Electronic energy + Delta-G solvation = -26323.969706 eV Core-core repulsion = 22394.678490 eV Total energy + Delta-G solvation = -3929.291216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.44822 -40.98448 -39.95487 -37.99095 -36.35370 -36.08780 -35.43635 -33.41136 -31.21930 -30.86207 -29.27461 -28.51180 -26.74766 -25.67007 -25.25066 -23.13831 -22.02482 -21.54640 -21.04989 -20.08359 -19.48035 -18.23837 -17.53001 -17.39531 -17.00762 -16.90914 -16.53510 -16.43684 -16.08762 -16.04448 -15.66227 -15.63259 -15.33904 -15.05561 -14.59462 -14.47936 -14.05121 -13.90695 -13.68186 -13.57261 -13.25756 -13.19353 -12.97671 -12.93134 -12.64093 -12.46370 -12.41601 -12.19549 -12.11836 -11.85064 -11.60336 -11.44467 -10.62210 -10.61466 -10.42150 -10.11980 -9.64420 -9.52264 -8.76643 -8.52896 -6.03223 -0.82906 0.08190 0.28973 0.74062 0.86895 1.33803 1.42246 1.56284 1.80907 1.84879 1.94631 2.28897 2.56676 2.82369 3.04171 3.13968 3.47053 3.79924 3.92796 3.95859 4.15534 4.17025 4.27496 4.35148 4.35461 4.39736 4.48511 4.56760 4.62059 4.65555 4.80068 4.82079 4.98903 4.99449 5.04639 5.19655 5.30829 5.35718 5.37075 5.59109 5.89059 5.89198 6.23415 6.31496 6.45268 6.86073 7.01264 7.40314 7.90734 8.64157 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.001992 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.841649 B =14055.003187 C =14980.813152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.536 5.536 3 C 0.029 3.971 4 C 0.139 3.861 5 C -0.152 4.152 6 C -0.064 4.064 7 C -0.100 4.100 8 C -0.128 4.128 9 S 0.128 5.872 10 C -0.253 4.253 11 C 0.589 3.411 12 O -0.562 6.562 13 N -0.703 5.703 14 C 0.120 3.880 15 C 0.431 3.569 16 O -0.624 6.624 17 N -0.556 5.556 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.012 4.012 27 C -0.094 4.094 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.410 0.590 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.280 0.720 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 22.338 14.281 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.257 5.257 3 C -0.116 4.116 4 C 0.042 3.958 5 C -0.174 4.174 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.245 4.245 9 S 0.396 5.604 10 C -0.372 4.372 11 C 0.376 3.624 12 O -0.443 6.443 13 N -0.356 5.356 14 C -0.007 4.007 15 C 0.218 3.782 16 O -0.512 6.512 17 N -0.192 5.192 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.045 4.045 27 C -0.102 4.102 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.188 0.812 36 H 0.168 0.832 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.234 0.766 41 H 0.090 0.910 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.438 20.877 14.238 29.613 hybrid contribution -0.241 0.384 -0.436 0.629 sum -15.679 21.260 13.802 29.805 Atomic orbital electron populations 1.22519 0.84102 1.02701 1.02415 1.59277 1.09898 1.15317 1.41235 1.22510 1.00578 0.86169 1.02389 1.18746 0.94542 0.92190 0.90303 1.21728 1.02068 1.01859 0.91761 1.21404 0.93975 0.92704 1.00576 1.20862 0.99517 0.98455 0.93405 1.23199 1.03116 0.99750 0.98443 1.84374 1.51879 1.28683 0.95495 1.23402 1.11269 1.04921 0.97563 1.17239 0.77868 0.79563 0.87766 1.90789 1.61334 1.68133 1.23999 1.45579 1.50247 1.28766 1.11001 1.20895 0.98374 0.92675 0.88796 1.20323 0.84996 0.86213 0.86645 1.90480 1.67616 1.75809 1.17292 1.41827 1.43304 1.25079 1.08955 1.19781 1.27086 1.05398 0.94322 0.89540 1.26158 0.98596 1.01434 0.94988 1.69684 1.44110 1.40063 1.01609 0.84792 0.77668 0.77015 0.78387 1.19431 1.19579 1.19571 1.20214 0.92418 0.92061 0.99807 1.18065 1.02648 0.98436 0.91058 0.93239 0.89455 0.92127 0.92202 0.89424 0.93312 0.82939 0.81215 0.83155 0.75183 0.88081 0.88061 0.76587 0.91006 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.33 127.69 1.19 1.52 16 2 N -0.54 -8.66 4.81 -743.23 -3.58 -12.24 16 3 C 0.03 0.35 9.37 127.69 1.20 1.55 16 4 C 0.14 2.49 4.80 38.84 0.19 2.68 16 5 C -0.15 -1.84 8.50 22.28 0.19 -1.65 16 6 C -0.06 -0.67 10.02 22.21 0.22 -0.45 16 7 C -0.10 -1.50 10.06 22.49 0.23 -1.28 16 8 C -0.13 -2.81 6.49 23.09 0.15 -2.66 16 9 S 0.13 3.32 22.26 -56.49 -1.26 2.06 16 10 C -0.25 -7.76 6.32 23.51 0.15 -7.62 16 11 C 0.59 21.19 7.79 86.49 0.67 21.86 16 12 O -0.56 -22.75 16.72 -4.26 -0.07 -22.82 16 13 N -0.70 -25.92 5.52 -470.66 -2.60 -28.52 16 14 C 0.12 4.61 6.15 85.63 0.53 5.13 16 15 C 0.43 20.51 7.85 87.66 0.69 21.19 16 16 O -0.62 -33.22 15.24 -3.07 -0.05 -33.27 16 17 N -0.56 -28.37 5.29 -306.98 -1.62 -29.99 16 18 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.91 -48.83 13.05 21.66 0.28 -48.55 16 22 Si 1.00 42.05 29.55 68.60 2.03 44.08 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 26 C -0.01 -0.34 9.59 21.73 0.21 -0.13 16 27 C -0.09 -2.20 5.87 -21.39 -0.13 -2.32 16 28 H 0.05 0.39 7.08 -2.39 -0.02 0.38 16 29 H 0.09 0.80 8.12 -2.38 -0.02 0.78 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 33 H 0.05 0.40 7.30 -2.38 -0.02 0.39 16 34 H 0.15 1.04 6.92 -2.91 -0.02 1.02 16 35 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.41 15.22 6.48 -92.71 -0.60 14.62 16 38 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 39 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 41 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.15 4.34 7.96 -2.91 -0.02 4.32 16 Total: -1.00 -69.94 375.12 -0.35 -70.28 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.24 Total: 39.16 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.76 Total: 19.81 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -7.52 Total: -119.30 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.12 Total: -56.09 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.26 Total: 2.06 kcal Total: -69.94 -0.35 -70.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935961778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.975 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds