Wall clock time and date at job start Wed Apr 1 2020 04:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21501 * 119.99735 * 179.97438 * 16 15 14 18 18 C 1.48342 * 120.00282 * 359.97106 * 16 15 14 19 19 C 1.41705 * 126.81593 * 180.02562 * 18 16 15 20 20 C 1.37155 * 103.79829 * 179.97438 * 19 18 16 21 21 C 1.47035 * 126.85537 * 180.02562 * 20 19 18 22 22 C 1.36197 * 125.33193 * 179.71897 * 21 20 19 23 23 C 1.37714 * 114.44120 * 179.83176 * 22 21 20 24 24 C 1.33731 * 115.19444 * 0.45436 * 23 22 21 25 25 S 1.75835 * 109.95910 * 359.75380 * 24 23 22 26 26 O 1.34566 * 106.28491 * 359.97438 * 20 19 18 27 27 N 1.20875 * 111.69514 * 359.72760 * 26 20 19 28 28 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 29 29 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 30 30 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 31 31 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 32 32 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 33 33 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 34 34 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 35 35 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 36 36 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 37 37 H 1.08003 * 128.09704 * 359.97438 * 19 18 16 38 38 H 1.07998 * 122.77876 * 0.02562 * 22 21 20 39 39 H 1.08000 * 122.40335 * 180.23299 * 23 22 21 40 40 H 1.08001 * 125.02557 * 179.73463 * 24 23 22 41 41 H 1.09001 * 109.87950 * 120.47256 * 28 15 14 42 42 H 1.08993 * 109.88934 * 241.64504 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1505 -4.3995 2.7407 18 6 1.3568 -5.9327 0.9841 19 6 1.0322 -7.1335 1.6628 20 6 1.1305 -8.0958 0.6904 21 6 0.8950 -9.5383 0.8501 22 6 0.9965 -10.4674 -0.1405 23 6 0.7301 -11.7580 0.2592 24 6 0.4052 -11.8990 1.5488 25 16 0.4307 -10.3334 2.3487 26 8 1.4845 -7.4559 -0.4392 27 7 1.5993 -6.2658 -0.2614 28 6 1.8183 -2.1177 1.2322 29 1 -0.3634 0.0929 1.0234 30 1 -0.3634 0.8398 -0.5923 31 1 -0.3632 -0.9329 -0.4312 32 1 0.0108 3.0589 1.5212 33 1 2.3364 -1.9478 -2.0838 34 1 0.6843 -2.0464 -1.3869 35 1 3.1200 -3.8116 -0.7827 36 1 1.4446 -4.3227 -1.1476 37 1 0.7689 -7.2611 2.7025 38 1 1.2668 -10.2135 -1.1548 39 1 0.7766 -12.5958 -0.4208 40 1 0.1627 -12.8359 2.0281 41 1 0.8541 -1.7932 1.6234 42 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972034212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:05 Heat of formation + Delta-G solvation = 106.270865 kcal Electronic energy + Delta-G solvation = -27024.168013 eV Core-core repulsion = 23101.016165 eV Total energy + Delta-G solvation = -3923.151848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -45.23725 -39.74839 -38.20745 -37.49306 -34.87086 -34.25476 -33.15667 -31.59992 -29.78238 -29.10524 -28.07142 -26.07901 -25.47681 -24.73678 -23.34306 -22.70396 -22.18714 -20.60179 -19.25541 -19.03367 -18.33408 -18.04502 -17.20074 -17.00232 -16.53650 -15.84998 -15.66599 -15.32680 -14.83380 -14.36082 -14.03907 -13.78396 -13.67746 -13.41256 -13.35486 -13.11513 -12.83386 -12.71186 -12.57065 -12.20604 -12.02712 -11.76158 -11.40585 -11.28091 -10.95915 -10.82460 -10.72885 -10.65411 -10.57050 -10.48865 -10.26619 -10.13720 -9.87983 -9.81238 -9.03563 -8.71139 -8.60037 -8.41019 -6.83306 -5.78248 -3.26504 -0.10306 0.83666 1.07779 1.39764 1.54895 2.36414 2.70215 2.91122 3.19592 3.35584 3.42979 3.45067 3.76254 4.05039 4.44742 4.52717 4.59147 4.82153 4.87144 4.98372 5.02281 5.06753 5.26704 5.34316 5.46160 5.53066 5.57344 5.60943 5.73311 5.84663 5.86492 5.89954 6.01945 6.31133 6.35568 6.47479 6.60256 6.79223 6.84218 7.29519 7.59932 7.68812 7.73076 7.76465 8.16142 8.33136 9.15924 9.78426 10.27812 11.25896 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.001927 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.584367 B =14526.345583 C =14947.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.594 5.594 16 C 0.601 3.399 17 O -0.527 6.527 18 C -0.005 4.005 19 C -0.167 4.167 20 C 0.036 3.964 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.136 4.136 24 C -0.209 4.209 25 S 0.176 5.824 26 O 0.131 5.869 27 N -0.322 5.322 28 C 0.087 3.913 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.183 0.817 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -29.610 -2.653 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.327 5.327 16 C 0.387 3.613 17 O -0.402 6.402 18 C -0.163 4.163 19 C -0.190 4.190 20 C -0.029 4.029 21 C -0.258 4.258 22 C -0.133 4.133 23 C -0.166 4.166 24 C -0.346 4.346 25 S 0.441 5.559 26 O 0.055 5.945 27 N -0.023 5.023 28 C -0.037 4.037 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.200 0.800 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.189 0.811 41 H 0.096 0.904 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.226 -28.102 -1.455 28.140 hybrid contribution 0.346 0.120 -0.778 0.860 sum 0.572 -27.982 -2.233 28.076 Atomic orbital electron populations 1.20819 0.82498 0.95698 0.99719 1.43937 1.01871 0.99890 1.84709 1.19257 0.98964 0.85174 1.35802 0.91095 1.25081 0.98020 0.98739 0.97589 1.70089 1.20573 1.27416 1.36461 0.86161 0.78509 0.84106 0.77595 1.20214 1.21557 1.21675 1.21443 0.96541 0.85899 0.89882 0.90119 1.23419 1.02849 0.93019 0.99994 1.22523 1.00572 0.99290 0.80043 1.48420 1.65372 1.07755 1.11155 1.16491 0.78570 0.81070 0.85216 1.90809 1.50190 1.84176 1.15073 1.23357 1.05468 0.97277 0.90195 1.22616 1.05459 0.89149 1.01778 1.21223 1.03512 0.91851 0.86294 1.21810 1.13491 0.91304 0.99232 1.20751 1.00741 0.91579 1.00200 1.20043 1.03008 0.97667 0.95846 1.25986 1.08626 1.01447 0.98506 1.84401 1.65268 0.97881 1.08368 1.84935 1.62843 1.14022 1.32746 1.74289 1.16801 0.92889 1.18298 1.23079 1.02793 0.77665 1.00193 0.94832 0.93920 0.97802 0.93622 0.90156 0.90418 0.91429 0.90020 0.80001 0.83130 0.83468 0.81114 0.90423 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.75 59.85 0.46 4.29 16 2 N -0.58 -14.28 2.93 -171.21 -0.50 -14.78 16 3 C -0.26 -7.05 9.59 -15.06 -0.14 -7.19 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 5 C 0.00 0.14 5.07 -17.43 -0.09 0.05 16 6 N -0.90 -26.14 10.83 55.49 0.60 -25.54 16 7 Si 0.91 21.59 29.58 -169.99 -5.03 16.57 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.17 3.46 3.45 -65.93 -0.23 3.24 16 12 H 0.08 1.58 7.93 -51.93 -0.41 1.17 16 13 C -0.15 -2.53 6.61 -24.42 -0.16 -2.69 16 14 C 0.10 1.49 6.17 -2.53 -0.02 1.48 16 15 N -0.59 -10.54 3.33 -171.45 -0.57 -11.11 16 16 C 0.60 10.82 7.88 -12.10 -0.10 10.72 16 17 O -0.53 -10.92 17.27 5.36 0.09 -10.82 16 18 C -0.01 -0.08 7.00 -82.66 -0.58 -0.65 16 19 C -0.17 -2.04 10.77 -38.65 -0.42 -2.46 16 20 C 0.04 0.38 7.28 -36.41 -0.26 0.12 16 21 C -0.14 -1.18 6.45 -36.75 -0.24 -1.42 16 22 C -0.10 -0.68 10.17 -40.51 -0.41 -1.09 16 23 C -0.14 -0.71 10.15 -41.35 -0.42 -1.13 16 24 C -0.21 -1.05 11.21 29.15 0.33 -0.72 16 25 S 0.18 1.18 23.11 -107.50 -2.48 -1.31 16 26 O 0.13 1.53 11.21 15.77 0.18 1.71 16 27 N -0.32 -4.40 9.26 33.36 0.31 -4.09 16 28 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 29 H 0.03 0.90 7.25 -51.93 -0.38 0.52 16 30 H 0.04 1.11 7.42 -51.93 -0.39 0.72 16 31 H 0.00 0.08 6.13 -51.93 -0.32 -0.24 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.36 6.15 -51.93 -0.32 1.04 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.18 6.21 -51.93 -0.32 0.86 16 37 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.08 1.75 7.06 -51.93 -0.37 1.38 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -31.70 365.85 -9.19 -40.89 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.01 Total: -1.28 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.29 Total: 4.24 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.16 Total: -55.51 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.27 Total: -9.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.48 Total: -1.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.70 -9.19 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.164 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds