Wall clock time and date at job start Wed Apr 1 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21501 * 119.99735 * 179.97438 * 16 15 14 18 18 C 1.48342 * 120.00282 * 359.97106 * 16 15 14 19 19 C 1.41705 * 126.81593 * 180.02562 * 18 16 15 20 20 C 1.37155 * 103.79829 * 179.97438 * 19 18 16 21 21 C 1.47035 * 126.85537 * 180.02562 * 20 19 18 22 22 C 1.36197 * 125.33193 * 179.71897 * 21 20 19 23 23 C 1.37714 * 114.44120 * 179.83176 * 22 21 20 24 24 C 1.33731 * 115.19444 * 0.45436 * 23 22 21 25 25 S 1.75835 * 109.95910 * 359.75380 * 24 23 22 26 26 O 1.34566 * 106.28491 * 359.97438 * 20 19 18 27 27 N 1.20875 * 111.69514 * 359.72760 * 26 20 19 28 28 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 29 29 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 30 30 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 31 31 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 32 32 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 33 33 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 34 34 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 35 35 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 36 36 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 37 37 H 1.08003 * 128.09704 * 359.97438 * 19 18 16 38 38 H 1.07998 * 122.77876 * 0.02562 * 22 21 20 39 39 H 1.08000 * 122.40335 * 180.23299 * 23 22 21 40 40 H 1.08001 * 125.02557 * 179.73463 * 24 23 22 41 41 H 1.09001 * 109.87950 * 120.47256 * 28 15 14 42 42 H 1.08993 * 109.88934 * 241.64504 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1505 -4.3995 2.7407 18 6 1.3568 -5.9327 0.9841 19 6 1.0322 -7.1335 1.6628 20 6 1.1305 -8.0958 0.6904 21 6 0.8950 -9.5383 0.8501 22 6 0.9965 -10.4674 -0.1405 23 6 0.7301 -11.7580 0.2592 24 6 0.4052 -11.8990 1.5488 25 16 0.4307 -10.3334 2.3487 26 8 1.4845 -7.4559 -0.4392 27 7 1.5993 -6.2658 -0.2614 28 6 1.8183 -2.1177 1.2322 29 1 -0.3634 0.0929 1.0234 30 1 -0.3634 0.8398 -0.5923 31 1 -0.3632 -0.9329 -0.4312 32 1 0.0108 3.0589 1.5212 33 1 2.3364 -1.9478 -2.0838 34 1 0.6843 -2.0464 -1.3869 35 1 3.1200 -3.8116 -0.7827 36 1 1.4446 -4.3227 -1.1476 37 1 0.7689 -7.2611 2.7025 38 1 1.2668 -10.2135 -1.1548 39 1 0.7766 -12.5958 -0.4208 40 1 0.1627 -12.8359 2.0281 41 1 0.8541 -1.7932 1.6234 42 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972034212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:04 Heat of formation + Delta-G solvation = 88.108923 kcal Electronic energy + Delta-G solvation = -27024.955574 eV Core-core repulsion = 23101.016165 eV Total energy + Delta-G solvation = -3923.939408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.23593 -41.21317 -39.07120 -38.68668 -36.66593 -35.30607 -34.08698 -33.38005 -31.39109 -29.87021 -29.52016 -28.10310 -26.70151 -25.51898 -24.61901 -24.18098 -23.37673 -21.47775 -20.91223 -19.79590 -19.26531 -19.08099 -18.95433 -18.30351 -17.51380 -17.32660 -16.83356 -16.62649 -16.23241 -15.75620 -15.19601 -15.14286 -14.97262 -14.53953 -14.39985 -14.19971 -14.16814 -13.86675 -13.59507 -13.55304 -13.38733 -13.15518 -12.81784 -12.68293 -12.52770 -12.42670 -12.26144 -12.09958 -11.83241 -11.79810 -11.75273 -11.59875 -11.48896 -11.40532 -10.67083 -9.89616 -9.51833 -9.34243 -8.85539 -7.86133 -5.37295 -0.73367 -0.01534 0.29784 0.81258 0.95487 1.45963 1.47637 1.53009 1.59126 1.81748 1.90346 1.91521 2.48334 2.62087 3.15529 3.26271 3.47832 3.64877 3.71208 3.79253 3.97946 4.03208 4.20995 4.22684 4.25783 4.36040 4.48841 4.59404 4.61013 4.65573 4.72037 4.81779 4.94105 5.05968 5.07991 5.11997 5.22117 5.27761 5.34028 5.44674 5.62500 5.65676 6.20718 6.28361 6.62541 6.85258 7.09316 7.79125 8.24933 9.16943 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.001927 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.584367 B =14526.345583 C =14947.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.598 5.598 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.973 3.027 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.295 1.295 11 C 0.168 3.832 12 H 0.089 0.911 13 C -0.138 4.138 14 C 0.107 3.893 15 N -0.597 5.597 16 C 0.599 3.401 17 O -0.565 6.565 18 C -0.025 4.025 19 C -0.183 4.183 20 C 0.062 3.938 21 C -0.181 4.181 22 C -0.083 4.083 23 C -0.146 4.146 24 C -0.188 4.188 25 S 0.161 5.839 26 O 0.144 5.856 27 N -0.328 5.328 28 C 0.098 3.902 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.031 0.969 32 H 0.248 0.752 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.200 0.800 41 H 0.044 0.956 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -32.873 -4.636 33.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.801 3.199 8 H -0.185 1.185 9 H -0.219 1.219 10 H -0.223 1.223 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.177 4.177 14 C -0.015 4.015 15 N -0.329 5.329 16 C 0.386 3.614 17 O -0.443 6.443 18 C -0.181 4.181 19 C -0.207 4.207 20 C -0.002 4.002 21 C -0.298 4.298 22 C -0.117 4.117 23 C -0.175 4.175 24 C -0.325 4.325 25 S 0.426 5.574 26 O 0.065 5.935 27 N -0.027 5.027 28 C -0.027 4.027 29 H 0.018 0.982 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.206 0.794 38 H 0.181 0.819 39 H 0.193 0.807 40 H 0.217 0.783 41 H 0.063 0.937 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.322 -31.386 -3.472 31.605 hybrid contribution 0.012 0.826 -0.178 0.845 sum 1.334 -30.560 -3.650 30.806 Atomic orbital electron populations 1.20491 0.82993 0.95978 0.97433 1.44110 1.01885 1.00988 1.84950 1.19655 0.99269 0.86144 1.34580 0.90199 1.25895 0.98757 1.02258 0.97967 1.70265 1.22225 1.27804 1.38118 0.85126 0.78091 0.79670 0.77054 1.18511 1.21865 1.22254 1.21623 0.96579 0.84663 0.91239 0.89340 1.23293 1.02560 0.92635 0.99245 1.22628 1.02081 0.98611 0.78193 1.48447 1.65440 1.06723 1.12313 1.16881 0.77492 0.82163 0.84817 1.90775 1.51720 1.85041 1.16758 1.22938 1.07788 0.96120 0.91269 1.22678 1.06816 0.88636 1.02546 1.21443 1.01115 0.92655 0.85035 1.21851 1.17001 0.90276 1.00711 1.21104 0.98277 0.91919 1.00380 1.20348 1.02925 0.97770 0.96418 1.26433 1.06302 1.01404 0.98325 1.84520 1.65379 0.99220 1.08270 1.84894 1.62213 1.13370 1.33001 1.74231 1.17103 0.93783 1.17580 1.22690 1.00617 0.79457 0.99960 0.98189 0.96188 0.95100 0.94238 0.87659 0.91355 0.89313 0.88772 0.79405 0.81865 0.80709 0.78296 0.93708 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 7.75 127.77 0.99 9.85 16 2 N -0.60 -29.64 2.93 -695.58 -2.04 -31.68 16 3 C -0.27 -14.37 9.59 84.04 0.81 -13.56 16 4 H 0.08 4.09 7.85 -2.91 -0.02 4.06 16 5 C -0.05 -2.99 5.07 84.86 0.43 -2.56 16 6 N -0.94 -56.32 10.83 21.65 0.23 -56.08 16 7 Si 0.97 44.93 29.58 68.60 2.03 46.95 16 8 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 10 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 11 C 0.17 6.67 3.45 46.28 0.16 6.83 16 12 H 0.09 3.38 7.93 -2.39 -0.02 3.36 16 13 C -0.14 -4.31 6.61 32.09 0.21 -4.10 16 14 C 0.11 3.04 6.17 86.86 0.54 3.57 16 15 N -0.60 -21.25 3.33 -814.64 -2.71 -23.96 16 16 C 0.60 22.05 7.88 86.93 0.68 22.73 16 17 O -0.56 -24.46 17.27 -3.72 -0.06 -24.53 16 18 C -0.02 -0.73 7.00 42.79 0.30 -0.43 16 19 C -0.18 -4.46 10.77 22.87 0.25 -4.21 16 20 C 0.06 1.25 7.28 24.32 0.18 1.43 16 21 C -0.18 -2.71 6.45 24.10 0.16 -2.55 16 22 C -0.08 -0.88 10.17 21.67 0.22 -0.66 16 23 C -0.15 -0.96 10.15 21.12 0.21 -0.75 16 24 C -0.19 -1.21 11.21 66.80 0.75 -0.46 16 25 S 0.16 1.88 23.11 -56.49 -1.31 0.57 16 26 O 0.14 3.12 11.21 66.60 0.75 3.87 16 27 N -0.33 -8.54 9.26 -48.87 -0.45 -8.99 16 28 C 0.10 4.01 6.51 86.73 0.56 4.58 16 29 H 0.00 -0.01 7.25 -2.39 -0.02 -0.03 16 30 H 0.02 1.06 7.42 -2.39 -0.02 1.04 16 31 H 0.03 1.35 6.13 -2.39 -0.01 1.33 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.07 2.29 6.15 -2.39 -0.01 2.28 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.52 6.21 -2.39 -0.01 2.50 16 37 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.20 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.04 2.13 7.06 -2.39 -0.02 2.12 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -71.17 365.85 3.95 -67.23 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.06 Total: 6.92 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.45 Total: 19.70 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.97 Total: -120.71 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.68 Total: -20.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.31 Total: 0.57 kcal Total: -71.17 3.95 -67.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.337 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds