Wall clock time and date at job start Wed Apr 1 2020 04:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08006 * 119.99951 * 154.74009 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64393 * 181.68684 * 11 2 1 13 13 C 1.55160 * 110.71899 * 305.02433 * 11 2 1 14 14 C 1.54910 * 101.58066 * 153.86642 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98680 * 14 13 11 16 16 C 1.34779 * 125.64981 * 204.09238 * 15 14 13 17 17 O 1.21501 * 120.00150 * 180.02562 * 16 15 14 18 18 C 1.48346 * 120.00199 * 0.04128 * 16 15 14 19 19 C 1.41697 * 126.81261 * 179.97438 * 18 16 15 20 20 C 1.37163 * 103.79768 * 179.97438 * 19 18 16 21 21 C 1.47022 * 126.85992 * 179.97438 * 20 19 18 22 22 C 1.36199 * 125.33655 * 179.71919 * 21 20 19 23 23 C 1.37718 * 114.44631 * 179.83182 * 22 21 20 24 24 C 1.33735 * 115.18792 * 0.46653 * 23 22 21 25 25 S 1.75820 * 109.96330 * 359.74299 * 24 23 22 26 26 O 1.34570 * 106.28120 * 0.02562 * 20 19 18 27 27 N 1.20875 * 111.69523 * 359.72878 * 26 20 19 28 28 C 1.47027 * 108.70451 * 24.13157 * 15 14 13 29 29 H 1.09008 * 109.46742 * 84.50528 * 1 2 3 30 30 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 31 31 H 1.08999 * 109.46882 * 324.51301 * 1 2 3 32 32 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 33 33 H 1.08997 * 111.00516 * 271.94024 * 13 11 2 34 34 H 1.08999 * 111.00487 * 35.79233 * 13 11 2 35 35 H 1.09002 * 110.36570 * 204.15072 * 14 13 11 36 36 H 1.08999 * 110.46092 * 81.87425 * 14 13 11 37 37 H 1.07993 * 128.10302 * 0.02562 * 19 18 16 38 38 H 1.08004 * 122.78013 * 0.02905 * 22 21 20 39 39 H 1.07993 * 122.40597 * 180.23255 * 23 22 21 40 40 H 1.08001 * 125.01786 * 179.72757 * 24 23 22 41 41 H 1.08992 * 109.88109 * 239.52125 * 28 15 14 42 42 H 1.09001 * 109.88021 * 118.35282 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2306 0.3991 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.9031 3.6958 -0.1034 9 1 2.6035 4.3585 -2.0402 10 1 1.8595 4.9694 0.1856 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7506 -2.1611 1.1875 14 6 2.0637 -3.5786 0.6467 15 7 1.7323 -3.5167 -0.7885 16 6 1.4055 -4.5685 -1.5653 17 8 1.1505 -4.3994 -2.7411 18 6 1.3568 -5.9327 -0.9846 19 6 1.0323 -7.1334 -1.6635 20 6 1.1316 -8.0960 -0.6914 21 6 0.8967 -9.5384 -0.8514 22 6 1.0097 -10.4693 0.1364 23 6 0.7341 -11.7587 -0.2612 24 6 0.4093 -11.8994 -1.5509 25 16 0.4330 -10.3336 -2.3502 26 8 1.4859 -7.4562 0.4382 27 7 1.6104 -6.2674 0.2582 28 6 1.8182 -2.1176 -1.2323 29 1 -0.3633 0.0984 -1.0230 30 1 -0.3634 -0.9351 0.4263 31 1 -0.3633 0.8368 0.5966 32 1 -0.1108 3.0959 -1.2802 33 1 2.3372 -1.9453 2.0805 34 1 0.6849 -2.0446 1.3844 35 1 1.4430 -4.3214 1.1477 36 1 3.1194 -3.8136 0.7824 37 1 0.7693 -7.2609 -2.7031 38 1 1.2891 -10.2167 1.1487 39 1 0.7808 -12.5965 0.4186 40 1 0.1682 -12.8365 -2.0306 41 1 0.8541 -1.7931 -1.6236 42 1 2.5848 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972034213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:09 Heat of formation + Delta-G solvation = 108.453550 kcal Electronic energy + Delta-G solvation = -27031.118715 eV Core-core repulsion = 23108.061516 eV Total energy + Delta-G solvation = -3923.057199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -45.23808 -39.75489 -38.20734 -37.50031 -34.87594 -34.25699 -33.15949 -31.61226 -29.76079 -29.10516 -28.05110 -26.08186 -25.47630 -24.73327 -23.34110 -22.67936 -22.17999 -20.60265 -19.23970 -19.03426 -18.33675 -18.04672 -17.21097 -17.02415 -16.53997 -15.85001 -15.66880 -15.32896 -14.85681 -14.36170 -14.01632 -13.77967 -13.67778 -13.39980 -13.33245 -13.11499 -12.82675 -12.69915 -12.54114 -12.24153 -12.02426 -11.72968 -11.41067 -11.29017 -10.90249 -10.85521 -10.72952 -10.65702 -10.55696 -10.37426 -10.26707 -10.14231 -9.89507 -9.82735 -9.03620 -8.71138 -8.55659 -8.41275 -6.82401 -5.78994 -3.27328 -0.10389 0.83574 1.07691 1.39717 1.54777 2.36355 2.70157 2.90826 3.19237 3.35568 3.42592 3.44375 3.76101 4.04920 4.43768 4.52672 4.59034 4.82073 4.87053 4.98286 5.02835 5.06709 5.27255 5.35695 5.45946 5.52882 5.57020 5.63108 5.73259 5.84312 5.86467 5.91097 6.02656 6.30964 6.36282 6.47849 6.60735 6.82671 6.86687 7.44628 7.59779 7.72549 7.73572 7.82125 8.15767 8.35728 9.18991 9.78754 10.28643 11.25095 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.035970 B = 0.001933 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.237671 B =14481.899400 C =14862.686227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.594 5.594 16 C 0.602 3.398 17 O -0.527 6.527 18 C -0.005 4.005 19 C -0.167 4.167 20 C 0.036 3.964 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.136 4.136 24 C -0.209 4.209 25 S 0.176 5.824 26 O 0.131 5.869 27 N -0.322 5.322 28 C 0.087 3.913 29 H 0.026 0.974 30 H -0.004 1.004 31 H 0.056 0.944 32 H 0.253 0.747 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.183 0.817 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -29.622 2.078 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.309 5.309 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.191 4.191 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.327 5.327 16 C 0.387 3.613 17 O -0.403 6.403 18 C -0.163 4.163 19 C -0.190 4.190 20 C -0.029 4.029 21 C -0.258 4.258 22 C -0.133 4.133 23 C -0.166 4.166 24 C -0.346 4.346 25 S 0.441 5.559 26 O 0.055 5.945 27 N -0.023 5.023 28 C -0.037 4.037 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.200 0.800 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.189 0.811 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.564 -28.108 0.884 28.128 hybrid contribution 0.472 0.071 0.547 0.726 sum 1.037 -28.037 1.431 28.093 Atomic orbital electron populations 1.20907 0.82140 0.95601 0.99507 1.43916 1.02057 0.99810 1.85136 1.19274 0.99399 0.86015 1.34333 0.91037 1.25207 0.96534 0.98954 0.98442 1.70111 1.11069 1.28042 1.45766 0.86151 0.79493 0.83257 0.77469 1.20242 1.21504 1.21661 1.21373 0.96503 0.85913 0.89912 0.90150 1.23381 1.02936 0.92989 1.00043 1.22527 1.00555 0.99293 0.80008 1.48415 1.65357 1.07733 1.11177 1.16489 0.78556 0.81077 0.85205 1.90806 1.50224 1.84191 1.15079 1.23350 1.05375 0.97259 0.90325 1.22613 1.05518 0.89112 1.01758 1.21223 1.03603 0.91836 0.86216 1.21807 1.13458 0.91273 0.99299 1.20754 1.00699 0.91569 1.00246 1.20045 1.02962 0.97694 0.95860 1.25985 1.08661 1.01458 0.98471 1.84397 1.65371 0.97829 1.08319 1.84936 1.62822 1.14140 1.32639 1.74291 1.16670 0.92932 1.18361 1.23062 1.02732 0.77735 1.00209 0.95545 0.98610 0.92547 0.93610 0.90207 0.90349 0.90047 0.91416 0.80007 0.83127 0.83467 0.81114 0.90468 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 7.70 59.85 0.46 4.47 16 2 N -0.59 -14.45 2.94 -171.38 -0.50 -14.95 16 3 C -0.26 -7.00 9.61 -15.06 -0.14 -7.15 16 4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 5 C 0.01 0.20 5.38 -17.43 -0.09 0.10 16 6 N -0.91 -26.10 10.11 55.49 0.56 -25.54 16 7 Si 0.91 21.59 29.56 -169.99 -5.02 16.56 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.17 3.48 3.44 -66.09 -0.23 3.25 16 12 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 13 C -0.15 -2.56 6.59 -24.58 -0.16 -2.72 16 14 C 0.10 1.51 6.17 -2.53 -0.02 1.49 16 15 N -0.59 -10.53 3.33 -171.44 -0.57 -11.10 16 16 C 0.60 10.81 7.88 -12.10 -0.10 10.71 16 17 O -0.53 -10.89 17.27 5.37 0.09 -10.80 16 18 C -0.01 -0.08 7.00 -82.66 -0.58 -0.66 16 19 C -0.17 -2.04 10.77 -38.65 -0.42 -2.45 16 20 C 0.04 0.38 7.28 -36.41 -0.26 0.12 16 21 C -0.14 -1.18 6.45 -36.76 -0.24 -1.42 16 22 C -0.10 -0.68 10.17 -40.50 -0.41 -1.09 16 23 C -0.14 -0.71 10.15 -41.35 -0.42 -1.13 16 24 C -0.21 -1.05 11.21 29.15 0.33 -0.72 16 25 S 0.18 1.18 23.11 -107.50 -2.48 -1.31 16 26 O 0.13 1.53 11.21 15.76 0.18 1.71 16 27 N -0.32 -4.40 9.27 33.36 0.31 -4.09 16 28 C 0.09 1.72 6.51 -3.06 -0.02 1.70 16 29 H 0.03 0.71 7.38 -51.92 -0.38 0.33 16 30 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 31 H 0.06 1.51 7.02 -51.93 -0.36 1.14 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16 35 H 0.08 1.18 6.23 -51.93 -0.32 0.86 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 38 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.08 1.73 7.07 -51.93 -0.37 1.36 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -31.53 365.13 -9.23 -40.76 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.99 Total: -1.24 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.30 Total: 4.50 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.20 Total: -55.69 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.27 Total: -9.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.48 Total: -1.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.53 -9.23 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.215 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds