Wall clock time and date at job start Wed Apr 1 2020 04:19:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36933 * 119.99981 * 2 1
4 4 H 1.08006 * 119.99951 * 154.74009 * 3 2 1
5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1
6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2
7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2
8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3
9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3
10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3
11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3
12 12 H 1.08997 * 110.64393 * 181.68684 * 11 2 1
13 13 C 1.55160 * 110.71899 * 305.02433 * 11 2 1
14 14 C 1.54910 * 101.58066 * 153.86642 * 13 11 2
15 15 N 1.47424 * 104.83272 * 322.98680 * 14 13 11
16 16 C 1.34779 * 125.64981 * 204.09238 * 15 14 13
17 17 O 1.21501 * 120.00150 * 180.02562 * 16 15 14
18 18 C 1.48346 * 120.00199 * 0.04128 * 16 15 14
19 19 C 1.41697 * 126.81261 * 179.97438 * 18 16 15
20 20 C 1.37163 * 103.79768 * 179.97438 * 19 18 16
21 21 C 1.47022 * 126.85992 * 179.97438 * 20 19 18
22 22 C 1.36199 * 125.33655 * 179.71919 * 21 20 19
23 23 C 1.37718 * 114.44631 * 179.83182 * 22 21 20
24 24 C 1.33735 * 115.18792 * 0.46653 * 23 22 21
25 25 S 1.75820 * 109.96330 * 359.74299 * 24 23 22
26 26 O 1.34570 * 106.28120 * 0.02562 * 20 19 18
27 27 N 1.20875 * 111.69523 * 359.72878 * 26 20 19
28 28 C 1.47027 * 108.70451 * 24.13157 * 15 14 13
29 29 H 1.09008 * 109.46742 * 84.50528 * 1 2 3
30 30 H 1.09002 * 109.47415 * 204.50557 * 1 2 3
31 31 H 1.08999 * 109.46882 * 324.51301 * 1 2 3
32 32 H 0.97005 * 119.99235 * 180.02562 * 6 5 3
33 33 H 1.08997 * 111.00516 * 271.94024 * 13 11 2
34 34 H 1.08999 * 111.00487 * 35.79233 * 13 11 2
35 35 H 1.09002 * 110.36570 * 204.15072 * 14 13 11
36 36 H 1.08999 * 110.46092 * 81.87425 * 14 13 11
37 37 H 1.07993 * 128.10302 * 0.02562 * 19 18 16
38 38 H 1.08004 * 122.78013 * 0.02905 * 22 21 20
39 39 H 1.07993 * 122.40597 * 180.23255 * 23 22 21
40 40 H 1.08001 * 125.01786 * 179.72757 * 24 23 22
41 41 H 1.08992 * 109.88109 * 239.52125 * 28 15 14
42 42 H 1.09001 * 109.88021 * 118.35282 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1523 1.2306 0.3991
5 6 1.5552 2.3306 -0.5129
6 7 0.3045 2.2960 -0.9214
7 14 2.5302 3.9201 -0.6232
8 1 3.9031 3.6958 -0.1034
9 1 2.6035 4.3585 -2.0402
10 1 1.8595 4.9694 0.1856
11 6 2.1975 -1.2687 -0.0006
12 1 3.2726 -1.0918 0.0295
13 6 1.7506 -2.1611 1.1875
14 6 2.0637 -3.5786 0.6467
15 7 1.7323 -3.5167 -0.7885
16 6 1.4055 -4.5685 -1.5653
17 8 1.1505 -4.3994 -2.7411
18 6 1.3568 -5.9327 -0.9846
19 6 1.0323 -7.1334 -1.6635
20 6 1.1316 -8.0960 -0.6914
21 6 0.8967 -9.5384 -0.8514
22 6 1.0097 -10.4693 0.1364
23 6 0.7341 -11.7587 -0.2612
24 6 0.4093 -11.8994 -1.5509
25 16 0.4330 -10.3336 -2.3502
26 8 1.4859 -7.4562 0.4382
27 7 1.6104 -6.2674 0.2582
28 6 1.8182 -2.1176 -1.2323
29 1 -0.3633 0.0984 -1.0230
30 1 -0.3634 -0.9351 0.4263
31 1 -0.3633 0.8368 0.5966
32 1 -0.1108 3.0959 -1.2802
33 1 2.3372 -1.9453 2.0805
34 1 0.6849 -2.0446 1.3844
35 1 1.4430 -4.3214 1.1477
36 1 3.1194 -3.8136 0.7824
37 1 0.7693 -7.2609 -2.7031
38 1 1.2891 -10.2167 1.1487
39 1 0.7808 -12.5965 0.4186
40 1 0.1682 -12.8365 -2.0306
41 1 0.8541 -1.7931 -1.6236
42 1 2.5848 -2.0190 -2.0009
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972034213.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:09
Heat of formation + Delta-G solvation = 108.453550 kcal
Electronic energy + Delta-G solvation = -27031.118715 eV
Core-core repulsion = 23108.061516 eV
Total energy + Delta-G solvation = -3923.057199 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 1.80 seconds
Orbital eigenvalues (eV)
-45.23808 -39.75489 -38.20734 -37.50031 -34.87594 -34.25699 -33.15949 -31.61226
-29.76079 -29.10516 -28.05110 -26.08186 -25.47630 -24.73327 -23.34110 -22.67936
-22.17999 -20.60265 -19.23970 -19.03426 -18.33675 -18.04672 -17.21097 -17.02415
-16.53997 -15.85001 -15.66880 -15.32896 -14.85681 -14.36170 -14.01632 -13.77967
-13.67778 -13.39980 -13.33245 -13.11499 -12.82675 -12.69915 -12.54114 -12.24153
-12.02426 -11.72968 -11.41067 -11.29017 -10.90249 -10.85521 -10.72952 -10.65702
-10.55696 -10.37426 -10.26707 -10.14231 -9.89507 -9.82735 -9.03620 -8.71138
-8.55659 -8.41275 -6.82401 -5.78994 -3.27328 -0.10389 0.83574 1.07691
1.39717 1.54777 2.36355 2.70157 2.90826 3.19237 3.35568 3.42592
3.44375 3.76101 4.04920 4.43768 4.52672 4.59034 4.82073 4.87053
4.98286 5.02835 5.06709 5.27255 5.35695 5.45946 5.52882 5.57020
5.63108 5.73259 5.84312 5.86467 5.91097 6.02656 6.30964 6.36282
6.47849 6.60735 6.82671 6.86687 7.44628 7.59779 7.72549 7.73572
7.82125 8.15767 8.35728 9.18991 9.78754 10.28643 11.25095
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.035970 B = 0.001933 C = 0.001883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.237671 B =14481.899400 C =14862.686227
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.162 3.838
2 N -0.589 5.589
3 C -0.261 4.261
4 H 0.072 0.928
5 C 0.007 3.993
6 N -0.905 5.905
7 Si 0.907 3.093
8 H -0.277 1.277
9 H -0.288 1.288
10 H -0.290 1.290
11 C 0.174 3.826
12 H 0.080 0.920
13 C -0.153 4.153
14 C 0.099 3.901
15 N -0.594 5.594
16 C 0.602 3.398
17 O -0.527 6.527
18 C -0.005 4.005
19 C -0.167 4.167
20 C 0.036 3.964
21 C -0.140 4.140
22 C -0.100 4.100
23 C -0.136 4.136
24 C -0.209 4.209
25 S 0.176 5.824
26 O 0.131 5.869
27 N -0.322 5.322
28 C 0.087 3.913
29 H 0.026 0.974
30 H -0.004 1.004
31 H 0.056 0.944
32 H 0.253 0.747
33 H 0.079 0.921
34 H 0.078 0.922
35 H 0.081 0.919
36 H 0.068 0.932
37 H 0.183 0.817
38 H 0.151 0.849
39 H 0.148 0.852
40 H 0.171 0.829
41 H 0.077 0.923
42 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.772 -29.622 2.078 29.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.309 5.309
3 C -0.390 4.390
4 H 0.090 0.910
5 C -0.191 4.191
6 N -0.550 5.550
7 Si 0.736 3.264
8 H -0.202 1.202
9 H -0.215 1.215
10 H -0.217 1.217
11 C 0.063 3.937
12 H 0.099 0.901
13 C -0.193 4.193
14 C -0.024 4.024
15 N -0.327 5.327
16 C 0.387 3.613
17 O -0.403 6.403
18 C -0.163 4.163
19 C -0.190 4.190
20 C -0.029 4.029
21 C -0.258 4.258
22 C -0.133 4.133
23 C -0.166 4.166
24 C -0.346 4.346
25 S 0.441 5.559
26 O 0.055 5.945
27 N -0.023 5.023
28 C -0.037 4.037
29 H 0.045 0.955
30 H 0.014 0.986
31 H 0.075 0.925
32 H 0.064 0.936
33 H 0.098 0.902
34 H 0.097 0.903
35 H 0.100 0.900
36 H 0.086 0.914
37 H 0.200 0.800
38 H 0.169 0.831
39 H 0.165 0.835
40 H 0.189 0.811
41 H 0.095 0.905
42 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 0.564 -28.108 0.884 28.128
hybrid contribution 0.472 0.071 0.547 0.726
sum 1.037 -28.037 1.431 28.093
Atomic orbital electron populations
1.20907 0.82140 0.95601 0.99507 1.43916 1.02057 0.99810 1.85136
1.19274 0.99399 0.86015 1.34333 0.91037 1.25207 0.96534 0.98954
0.98442 1.70111 1.11069 1.28042 1.45766 0.86151 0.79493 0.83257
0.77469 1.20242 1.21504 1.21661 1.21373 0.96503 0.85913 0.89912
0.90150 1.23381 1.02936 0.92989 1.00043 1.22527 1.00555 0.99293
0.80008 1.48415 1.65357 1.07733 1.11177 1.16489 0.78556 0.81077
0.85205 1.90806 1.50224 1.84191 1.15079 1.23350 1.05375 0.97259
0.90325 1.22613 1.05518 0.89112 1.01758 1.21223 1.03603 0.91836
0.86216 1.21807 1.13458 0.91273 0.99299 1.20754 1.00699 0.91569
1.00246 1.20045 1.02962 0.97694 0.95860 1.25985 1.08661 1.01458
0.98471 1.84397 1.65371 0.97829 1.08319 1.84936 1.62822 1.14140
1.32639 1.74291 1.16670 0.92932 1.18361 1.23062 1.02732 0.77735
1.00209 0.95545 0.98610 0.92547 0.93610 0.90207 0.90349 0.90047
0.91416 0.80007 0.83127 0.83467 0.81114 0.90468 0.91681
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 36.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.01 7.70 59.85 0.46 4.47 16
2 N -0.59 -14.45 2.94 -171.38 -0.50 -14.95 16
3 C -0.26 -7.00 9.61 -15.06 -0.14 -7.15 16
4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16
5 C 0.01 0.20 5.38 -17.43 -0.09 0.10 16
6 N -0.91 -26.10 10.11 55.49 0.56 -25.54 16
7 Si 0.91 21.59 29.56 -169.99 -5.02 16.56 16
8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
11 C 0.17 3.48 3.44 -66.09 -0.23 3.25 16
12 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16
13 C -0.15 -2.56 6.59 -24.58 -0.16 -2.72 16
14 C 0.10 1.51 6.17 -2.53 -0.02 1.49 16
15 N -0.59 -10.53 3.33 -171.44 -0.57 -11.10 16
16 C 0.60 10.81 7.88 -12.10 -0.10 10.71 16
17 O -0.53 -10.89 17.27 5.37 0.09 -10.80 16
18 C -0.01 -0.08 7.00 -82.66 -0.58 -0.66 16
19 C -0.17 -2.04 10.77 -38.65 -0.42 -2.45 16
20 C 0.04 0.38 7.28 -36.41 -0.26 0.12 16
21 C -0.14 -1.18 6.45 -36.76 -0.24 -1.42 16
22 C -0.10 -0.68 10.17 -40.50 -0.41 -1.09 16
23 C -0.14 -0.71 10.15 -41.35 -0.42 -1.13 16
24 C -0.21 -1.05 11.21 29.15 0.33 -0.72 16
25 S 0.18 1.18 23.11 -107.50 -2.48 -1.31 16
26 O 0.13 1.53 11.21 15.76 0.18 1.71 16
27 N -0.32 -4.40 9.27 33.36 0.31 -4.09 16
28 C 0.09 1.72 6.51 -3.06 -0.02 1.70 16
29 H 0.03 0.71 7.38 -51.92 -0.38 0.33 16
30 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16
31 H 0.06 1.51 7.02 -51.93 -0.36 1.14 16
32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16
35 H 0.08 1.18 6.23 -51.93 -0.32 0.86 16
36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16
38 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16
39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16
40 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16
41 H 0.08 1.73 7.07 -51.93 -0.37 1.36 16
42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
LS Contribution 365.13 15.07 5.50 5.50
Total: -1.00 -31.53 365.13 -9.23 -40.76
By element:
Atomic # 1 Polarization: 3.75 SS G_CDS: -4.99 Total: -1.24 kcal
Atomic # 6 Polarization: 6.80 SS G_CDS: -2.30 Total: 4.50 kcal
Atomic # 7 Polarization: -55.48 SS G_CDS: -0.20 Total: -55.69 kcal
Atomic # 8 Polarization: -9.36 SS G_CDS: 0.27 Total: -9.09 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal
Atomic # 16 Polarization: 1.18 SS G_CDS: -2.48 Total: -1.31 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -31.53 -9.23 -40.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972034213.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.215 kcal
(2) G-P(sol) polarization free energy of solvation -31.527 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 108.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.80 seconds