Wall clock time and date at job start Wed Apr 1 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00108 * 2 1 4 4 H 1.08000 * 119.99773 * 156.66510 * 3 2 1 5 5 C 1.38809 * 119.99689 * 336.66391 * 3 2 1 6 6 N 1.31617 * 120.00449 * 331.06879 * 5 3 2 7 7 Si 1.86809 * 119.99752 * 151.06646 * 5 3 2 8 8 H 1.48492 * 109.47161 * 269.99959 * 7 5 3 9 9 H 1.48493 * 109.46932 * 30.00112 * 7 5 3 10 10 H 1.48500 * 109.46621 * 150.00029 * 7 5 3 11 11 C 1.46499 * 119.99944 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88602 * 177.57041 * 11 2 1 13 13 C 1.55160 * 111.00254 * 53.65259 * 11 2 1 14 14 C 1.54316 * 102.94080 * 206.42109 * 13 11 2 15 15 N 1.47021 * 107.27470 * 22.19221 * 14 13 11 16 16 C 1.34779 * 125.65131 * 181.08948 * 15 14 13 17 17 O 1.21628 * 120.00165 * 179.97438 * 16 15 14 18 18 C 1.47301 * 119.99787 * 359.96472 * 16 15 14 19 19 C 1.35163 * 122.41383 * 179.73280 * 18 16 15 20 20 S 1.71001 * 109.16124 * 179.89709 * 19 18 16 21 21 C 1.75993 * 90.59519 * 0.30105 * 20 19 18 22 22 C 1.47143 * 125.33060 * 179.84111 * 21 20 19 23 23 C 1.36235 * 125.96079 * 359.69696 * 22 21 20 24 24 C 1.40762 * 106.72604 * 179.85150 * 23 22 21 25 25 C 1.34832 * 107.07079 * 0.40517 * 24 23 22 26 26 O 1.34243 * 108.72302 * 359.74919 * 25 24 23 27 27 N 1.30126 * 109.34078 * 359.82051 * 21 20 19 28 28 C 1.47426 * 108.69880 * 1.05921 * 15 14 13 29 29 H 1.09001 * 109.47066 * 92.73486 * 1 2 3 30 30 H 1.09000 * 109.47494 * 212.73681 * 1 2 3 31 31 H 1.08998 * 109.47352 * 332.74034 * 1 2 3 32 32 H 0.97001 * 119.99626 * 354.04312 * 6 5 3 33 33 H 1.08992 * 110.71967 * 324.78898 * 13 11 2 34 34 H 1.09003 * 110.71982 * 88.05743 * 13 11 2 35 35 H 1.08998 * 109.88587 * 262.77386 * 14 13 11 36 36 H 1.09006 * 110.01043 * 141.68690 * 14 13 11 37 37 H 1.08003 * 125.42158 * 0.02562 * 19 18 16 38 38 H 1.08007 * 126.63734 * 359.95551 * 23 22 21 39 39 H 1.07999 * 126.46516 * 180.13417 * 24 23 22 40 40 H 1.08009 * 125.64183 * 179.73119 * 25 24 23 41 41 H 1.08998 * 110.36598 * 217.02987 * 28 15 14 42 42 H 1.09000 * 110.36304 * 94.71090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1634 1.2241 0.3705 5 6 1.5408 2.3389 -0.4762 6 7 0.6127 2.2571 -1.4058 7 14 2.0386 4.0066 0.2025 8 1 1.1876 4.3387 1.3732 9 1 3.4626 3.9654 0.6214 10 1 1.8612 5.0413 -0.8478 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0427 13 6 1.7320 -2.1801 -1.1657 14 6 2.0380 -3.5981 -0.6395 15 7 2.0991 -3.5158 0.8271 16 6 2.3654 -4.5406 1.6610 17 8 2.3906 -4.3559 2.8630 18 6 2.6257 -5.8844 1.1168 19 6 2.9028 -6.9451 1.9074 20 16 3.1428 -8.3268 0.9290 21 6 2.8583 -7.3718 -0.5216 22 6 2.8945 -7.8861 -1.8997 23 6 3.1576 -9.1713 -2.2673 24 6 3.0846 -9.2138 -3.6724 25 6 2.7928 -7.9659 -4.0915 26 8 2.6787 -7.1667 -3.0189 27 7 2.6104 -6.1396 -0.1846 28 6 1.8216 -2.1264 1.2345 29 1 -0.3633 -0.0490 -1.0265 30 1 -0.3634 -0.8644 0.5557 31 1 -0.3634 0.9135 0.4707 32 1 0.4149 1.4025 -1.8199 33 1 0.6643 -2.0583 -1.3478 34 1 2.3046 -1.9723 -2.0697 35 1 2.9956 -3.9405 -1.0317 36 1 1.2474 -4.2860 -0.9396 37 1 2.9611 -6.9238 2.9856 38 1 3.3779 -9.9980 -1.6081 39 1 3.2380 -10.0812 -4.2972 40 1 2.6713 -7.6597 -5.1201 41 1 2.4387 -1.8514 2.0898 42 1 0.7650 -2.0050 1.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972194161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:32 Heat of formation + Delta-G solvation = 69.440464 kcal Electronic energy + Delta-G solvation = -27484.811103 eV Core-core repulsion = 23560.062169 eV Total energy + Delta-G solvation = -3924.748934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.93402 -40.66116 -38.90808 -37.41447 -35.06466 -33.57242 -32.16670 -31.62532 -29.71961 -29.31015 -28.18354 -26.31894 -25.75521 -24.10781 -22.47771 -22.27166 -22.00233 -20.51617 -19.39664 -19.33763 -18.52704 -17.82905 -17.53800 -16.57011 -16.36872 -16.08148 -15.91108 -15.26198 -14.87694 -14.07731 -13.93685 -13.89726 -13.54269 -13.47427 -13.38311 -13.35559 -13.15394 -12.95757 -12.61724 -12.40789 -12.20385 -11.94830 -11.34531 -10.92427 -10.75313 -10.66526 -10.58912 -10.56586 -10.27377 -10.25716 -10.10345 -10.00823 -9.94781 -9.71253 -9.45312 -8.55136 -8.40548 -8.26477 -6.98432 -6.08915 -3.23070 -0.19181 0.53882 1.11156 1.15116 1.88729 2.35147 2.63175 3.11683 3.32038 3.51949 3.53498 3.54313 3.70902 4.35527 4.47284 4.58244 4.61508 4.79397 4.87275 5.03330 5.22688 5.28446 5.29141 5.39701 5.42700 5.52875 5.60182 5.64144 5.79209 5.91738 5.94337 6.11529 6.27353 6.36209 6.49615 6.51721 6.59651 6.61517 6.82175 6.89701 7.08151 7.11352 7.68460 7.97008 8.20159 8.54514 9.07817 9.82148 10.19564 11.18580 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002576 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.135007 B =10865.575882 C =12263.404991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.587 5.587 3 C -0.362 4.362 4 H 0.061 0.939 5 C -0.018 4.018 6 N -0.910 5.910 7 Si 1.064 2.936 8 H -0.293 1.293 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.156 4.156 14 C 0.119 3.881 15 N -0.592 5.592 16 C 0.598 3.402 17 O -0.541 6.541 18 C 0.026 3.974 19 C -0.216 4.216 20 S 0.219 5.781 21 C 0.102 3.898 22 C 0.051 3.949 23 C -0.170 4.170 24 C -0.215 4.215 25 C -0.013 4.013 26 O -0.148 6.148 27 N -0.414 5.414 28 C 0.086 3.914 29 H 0.013 0.987 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.271 0.729 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.197 0.803 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.211 0.789 41 H 0.075 0.925 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -27.735 -2.473 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.308 5.308 3 C -0.490 4.490 4 H 0.078 0.922 5 C -0.221 4.221 6 N -0.550 5.550 7 Si 0.894 3.106 8 H -0.220 1.220 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.064 3.936 12 H 0.098 0.902 13 C -0.196 4.196 14 C -0.004 4.004 15 N -0.323 5.323 16 C 0.383 3.617 17 O -0.420 6.420 18 C -0.110 4.110 19 C -0.358 4.358 20 S 0.477 5.523 21 C -0.173 4.173 22 C -0.003 4.003 23 C -0.193 4.193 24 C -0.234 4.234 25 C -0.083 4.083 26 O -0.042 6.042 27 N -0.130 5.130 28 C -0.038 4.038 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.214 0.786 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.228 0.772 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.558 -26.286 -1.984 26.752 hybrid contribution 0.185 -1.046 0.200 1.081 sum 4.743 -27.332 -1.784 27.798 Atomic orbital electron populations 1.20989 0.83802 0.98769 0.97787 1.43864 1.01020 1.00613 1.85350 1.20005 1.00844 0.86650 1.41532 0.92155 1.25778 0.98705 1.01958 0.95701 1.70757 1.35070 1.28526 1.20608 0.83534 0.75272 0.75810 0.75956 1.21997 1.21822 1.21682 1.21433 0.96555 0.85564 0.90049 0.90176 1.23280 1.02434 0.93401 1.00473 1.22065 1.01909 0.97784 0.78638 1.48258 1.66780 1.09204 1.08102 1.16682 0.77915 0.81860 0.85241 1.90810 1.53825 1.83460 1.13892 1.20198 1.06870 0.96650 0.87319 1.26665 1.06027 0.95957 1.07173 1.83656 1.62878 1.10280 0.95520 1.24395 1.06442 0.91852 0.94618 1.18834 1.08651 0.89661 0.83106 1.21803 1.05717 0.95469 0.96277 1.21744 1.08359 0.98702 0.94579 1.24411 1.03036 0.89513 0.91383 1.84227 1.68372 1.38182 1.13447 1.67448 1.13672 1.16205 1.15647 1.23023 1.01319 0.78872 1.00567 0.96885 0.96368 0.92765 0.91810 0.90921 0.90539 0.91177 0.91498 0.78611 0.82721 0.82568 0.77247 0.90628 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.12 7.72 59.84 0.46 3.58 16 2 N -0.59 -14.57 2.84 -171.04 -0.49 -15.05 16 3 C -0.36 -10.03 9.43 -15.06 -0.14 -10.18 16 4 H 0.06 1.69 7.97 -52.49 -0.42 1.27 16 5 C -0.02 -0.52 4.63 -17.43 -0.08 -0.60 16 6 N -0.91 -27.07 12.70 55.49 0.70 -26.37 16 7 Si 1.06 25.37 30.01 -169.99 -5.10 20.27 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.65 3.55 -65.79 -0.23 3.41 16 12 H 0.08 1.73 7.95 -51.93 -0.41 1.32 16 13 C -0.16 -2.83 6.51 -24.90 -0.16 -2.99 16 14 C 0.12 1.95 5.45 -3.07 -0.02 1.94 16 15 N -0.59 -10.60 3.33 -171.84 -0.57 -11.17 16 16 C 0.60 10.57 7.83 -12.57 -0.10 10.47 16 17 O -0.54 -10.77 16.91 5.25 0.09 -10.68 16 18 C 0.03 0.38 6.57 -84.93 -0.56 -0.18 16 19 C -0.22 -2.39 10.56 29.64 0.31 -2.07 16 20 S 0.22 1.75 22.93 -107.50 -2.46 -0.71 16 21 C 0.10 1.15 7.46 -14.66 -0.11 1.04 16 22 C 0.05 0.53 7.24 -36.69 -0.27 0.26 16 23 C -0.17 -1.28 10.62 -39.35 -0.42 -1.70 16 24 C -0.21 -1.38 10.88 -39.84 -0.43 -1.81 16 25 C -0.01 -0.09 12.08 29.52 0.36 0.27 16 26 O -0.15 -1.62 10.67 4.55 0.05 -1.57 16 27 N -0.41 -5.78 7.57 -8.28 -0.06 -5.84 16 28 C 0.09 1.69 6.49 -2.53 -0.02 1.67 16 29 H 0.01 0.32 6.68 -51.93 -0.35 -0.03 16 30 H 0.02 0.38 6.28 -51.93 -0.33 0.05 16 31 H 0.05 1.39 7.25 -51.93 -0.38 1.02 16 32 H 0.27 8.06 6.31 -40.82 -0.26 7.81 16 33 H 0.07 1.36 6.99 -51.93 -0.36 1.00 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.13 7.50 -51.93 -0.39 0.74 16 36 H 0.07 1.07 7.61 -51.93 -0.40 0.68 16 37 H 0.20 1.89 7.99 -52.48 -0.42 1.47 16 38 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 42 H 0.07 1.41 6.26 -51.93 -0.32 1.08 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -33.82 364.43 -8.69 -42.51 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.93 Total: 0.02 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.40 Total: 3.11 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.41 Total: -58.43 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.14 Total: -12.25 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.27 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.46 Total: -0.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.82 -8.69 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972194161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.953 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds