Wall clock time and date at job start Wed Apr 1 2020 04:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00108 * 2 1 4 4 H 1.08000 * 119.99773 * 156.66510 * 3 2 1 5 5 C 1.38809 * 119.99689 * 336.66391 * 3 2 1 6 6 N 1.31617 * 120.00449 * 331.06879 * 5 3 2 7 7 Si 1.86809 * 119.99752 * 151.06646 * 5 3 2 8 8 H 1.48492 * 109.47161 * 269.99959 * 7 5 3 9 9 H 1.48493 * 109.46932 * 30.00112 * 7 5 3 10 10 H 1.48500 * 109.46621 * 150.00029 * 7 5 3 11 11 C 1.46499 * 119.99944 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88602 * 177.57041 * 11 2 1 13 13 C 1.55160 * 111.00254 * 53.65259 * 11 2 1 14 14 C 1.54316 * 102.94080 * 206.42109 * 13 11 2 15 15 N 1.47021 * 107.27470 * 22.19221 * 14 13 11 16 16 C 1.34779 * 125.65131 * 181.08948 * 15 14 13 17 17 O 1.21628 * 120.00165 * 179.97438 * 16 15 14 18 18 C 1.47301 * 119.99787 * 359.96472 * 16 15 14 19 19 C 1.35163 * 122.41383 * 179.73280 * 18 16 15 20 20 S 1.71001 * 109.16124 * 179.89709 * 19 18 16 21 21 C 1.75993 * 90.59519 * 0.30105 * 20 19 18 22 22 C 1.47143 * 125.33060 * 179.84111 * 21 20 19 23 23 C 1.36235 * 125.96079 * 359.69696 * 22 21 20 24 24 C 1.40762 * 106.72604 * 179.85150 * 23 22 21 25 25 C 1.34832 * 107.07079 * 0.40517 * 24 23 22 26 26 O 1.34243 * 108.72302 * 359.74919 * 25 24 23 27 27 N 1.30126 * 109.34078 * 359.82051 * 21 20 19 28 28 C 1.47426 * 108.69880 * 1.05921 * 15 14 13 29 29 H 1.09001 * 109.47066 * 92.73486 * 1 2 3 30 30 H 1.09000 * 109.47494 * 212.73681 * 1 2 3 31 31 H 1.08998 * 109.47352 * 332.74034 * 1 2 3 32 32 H 0.97001 * 119.99626 * 354.04312 * 6 5 3 33 33 H 1.08992 * 110.71967 * 324.78898 * 13 11 2 34 34 H 1.09003 * 110.71982 * 88.05743 * 13 11 2 35 35 H 1.08998 * 109.88587 * 262.77386 * 14 13 11 36 36 H 1.09006 * 110.01043 * 141.68690 * 14 13 11 37 37 H 1.08003 * 125.42158 * 0.02562 * 19 18 16 38 38 H 1.08007 * 126.63734 * 359.95551 * 23 22 21 39 39 H 1.07999 * 126.46516 * 180.13417 * 24 23 22 40 40 H 1.08009 * 125.64183 * 179.73119 * 25 24 23 41 41 H 1.08998 * 110.36598 * 217.02987 * 28 15 14 42 42 H 1.09000 * 110.36304 * 94.71090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1634 1.2241 0.3705 5 6 1.5408 2.3389 -0.4762 6 7 0.6127 2.2571 -1.4058 7 14 2.0386 4.0066 0.2025 8 1 1.1876 4.3387 1.3732 9 1 3.4626 3.9654 0.6214 10 1 1.8612 5.0413 -0.8478 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0427 13 6 1.7320 -2.1801 -1.1657 14 6 2.0380 -3.5981 -0.6395 15 7 2.0991 -3.5158 0.8271 16 6 2.3654 -4.5406 1.6610 17 8 2.3906 -4.3559 2.8630 18 6 2.6257 -5.8844 1.1168 19 6 2.9028 -6.9451 1.9074 20 16 3.1428 -8.3268 0.9290 21 6 2.8583 -7.3718 -0.5216 22 6 2.8945 -7.8861 -1.8997 23 6 3.1576 -9.1713 -2.2673 24 6 3.0846 -9.2138 -3.6724 25 6 2.7928 -7.9659 -4.0915 26 8 2.6787 -7.1667 -3.0189 27 7 2.6104 -6.1396 -0.1846 28 6 1.8216 -2.1264 1.2345 29 1 -0.3633 -0.0490 -1.0265 30 1 -0.3634 -0.8644 0.5557 31 1 -0.3634 0.9135 0.4707 32 1 0.4149 1.4025 -1.8199 33 1 0.6643 -2.0583 -1.3478 34 1 2.3046 -1.9723 -2.0697 35 1 2.9956 -3.9405 -1.0317 36 1 1.2474 -4.2860 -0.9396 37 1 2.9611 -6.9238 2.9856 38 1 3.3779 -9.9980 -1.6081 39 1 3.2380 -10.0812 -4.2972 40 1 2.6713 -7.6597 -5.1201 41 1 2.4387 -1.8514 2.0898 42 1 0.7650 -2.0050 1.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972194161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:31 Heat of formation + Delta-G solvation = 48.097470 kcal Electronic energy + Delta-G solvation = -27485.736605 eV Core-core repulsion = 23560.062169 eV Total energy + Delta-G solvation = -3925.674435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.52336 -41.81450 -40.16605 -38.94203 -36.90858 -34.17332 -33.57971 -32.83658 -31.39262 -30.03937 -29.75205 -28.25811 -26.92855 -25.35673 -24.11250 -23.26385 -22.86599 -21.29300 -21.14635 -20.29739 -19.65501 -19.49937 -18.60002 -17.70425 -17.36484 -17.21321 -17.00351 -16.38663 -16.10595 -15.88359 -15.54029 -15.17357 -15.03877 -14.81431 -14.71402 -14.24520 -14.07323 -13.86316 -13.84231 -13.64281 -13.45465 -13.16592 -13.00360 -12.75939 -12.63114 -12.48857 -12.35714 -11.89236 -11.78239 -11.53859 -11.40135 -11.33044 -11.00265 -10.88386 -10.50093 -10.44199 -9.86533 -9.10861 -9.03807 -8.29008 -5.41341 -0.96012 -0.17930 0.27132 0.29155 1.16908 1.59073 1.65425 1.69585 1.79263 1.83959 2.06798 2.15717 2.62576 2.69648 3.14314 3.36756 3.42392 3.75673 3.77919 3.96362 3.99115 4.04177 4.05142 4.14941 4.19040 4.27428 4.46537 4.55506 4.62946 4.74427 4.77948 4.83764 4.88990 4.93472 5.01333 5.02712 5.07756 5.12082 5.25470 5.49424 5.79672 5.98393 6.23280 6.32877 6.35916 6.84645 6.98823 7.72196 8.10140 8.96574 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002576 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.135007 B =10865.575882 C =12263.404991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.603 5.603 3 C -0.368 4.368 4 H 0.053 0.947 5 C -0.066 4.066 6 N -0.935 5.935 7 Si 1.113 2.887 8 H -0.285 1.285 9 H -0.275 1.275 10 H -0.292 1.292 11 C 0.170 3.830 12 H 0.069 0.931 13 C -0.144 4.144 14 C 0.139 3.861 15 N -0.598 5.598 16 C 0.595 3.405 17 O -0.573 6.573 18 C -0.005 4.005 19 C -0.222 4.222 20 S 0.333 5.667 21 C 0.084 3.916 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.217 4.217 25 C -0.015 4.015 26 O -0.181 6.181 27 N -0.450 5.450 28 C 0.100 3.900 29 H 0.004 0.996 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.207 0.793 38 H 0.181 0.819 39 H 0.186 0.814 40 H 0.240 0.760 41 H 0.062 0.938 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -30.987 -2.893 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.325 5.325 3 C -0.497 4.497 4 H 0.071 0.929 5 C -0.264 4.264 6 N -0.576 5.576 7 Si 0.938 3.062 8 H -0.212 1.212 9 H -0.200 1.200 10 H -0.219 1.219 11 C 0.061 3.939 12 H 0.088 0.912 13 C -0.184 4.184 14 C 0.016 3.984 15 N -0.329 5.329 16 C 0.383 3.617 17 O -0.454 6.454 18 C -0.141 4.141 19 C -0.365 4.365 20 S 0.592 5.408 21 C -0.190 4.190 22 C -0.044 4.044 23 C -0.176 4.176 24 C -0.236 4.236 25 C -0.085 4.085 26 O -0.077 6.077 27 N -0.166 5.166 28 C -0.025 4.025 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.224 0.776 38 H 0.198 0.802 39 H 0.203 0.797 40 H 0.256 0.744 41 H 0.081 0.919 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.477 -29.607 -2.403 30.205 hybrid contribution -0.030 -0.304 0.273 0.410 sum 5.448 -29.911 -2.130 30.478 Atomic orbital electron populations 1.20804 0.83369 0.98508 0.97276 1.43994 1.01485 1.01208 1.85774 1.20199 1.00796 0.88068 1.40618 0.92946 1.27061 0.98593 1.05231 0.95518 1.70869 1.36712 1.27858 1.22185 0.82876 0.75987 0.71965 0.75362 1.21177 1.20007 1.21886 1.21474 0.95663 0.84833 0.91907 0.91240 1.23129 1.02010 0.93756 0.99462 1.21904 1.02405 0.96336 0.77723 1.48291 1.67332 1.08596 1.08681 1.17211 0.76713 0.82960 0.84841 1.90771 1.55161 1.84296 1.15124 1.19739 1.10456 0.95547 0.88371 1.26986 1.04321 0.96985 1.08206 1.83203 1.59762 1.06328 0.91512 1.24797 1.05705 0.92058 0.96470 1.19083 1.11753 0.90730 0.82816 1.22228 1.03178 0.94870 0.97302 1.22160 1.07614 0.99373 0.94403 1.25202 1.01704 0.89743 0.91879 1.84198 1.69260 1.39758 1.14490 1.67342 1.15593 1.18236 1.15447 1.22658 1.00549 0.80056 0.99246 0.97792 0.93830 0.95308 0.93096 0.91374 0.90167 0.90678 0.90768 0.77622 0.80176 0.79665 0.74378 0.91906 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.07 7.72 127.77 0.99 8.06 16 2 N -0.60 -30.65 2.84 -695.05 -1.97 -32.62 16 3 C -0.37 -20.82 9.43 84.03 0.79 -20.02 16 4 H 0.05 3.00 7.97 -2.91 -0.02 2.97 16 5 C -0.07 -3.79 4.63 84.86 0.39 -3.40 16 6 N -0.94 -56.80 12.70 21.65 0.28 -56.52 16 7 Si 1.11 51.67 30.01 68.60 2.06 53.73 16 8 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 11 C 0.17 7.31 3.55 46.38 0.16 7.47 16 12 H 0.07 3.11 7.95 -2.39 -0.02 3.09 16 13 C -0.14 -5.29 6.51 31.78 0.21 -5.08 16 14 C 0.14 4.59 5.45 86.73 0.47 5.07 16 15 N -0.60 -21.82 3.33 -815.82 -2.71 -24.53 16 16 C 0.60 21.42 7.83 86.63 0.68 22.10 16 17 O -0.57 -23.31 16.91 -4.12 -0.07 -23.38 16 18 C 0.00 -0.14 6.57 40.70 0.27 0.13 16 19 C -0.22 -4.57 10.56 67.11 0.71 -3.86 16 20 S 0.33 4.30 22.93 -56.49 -1.30 3.01 16 21 C 0.08 1.76 7.46 87.29 0.65 2.41 16 22 C 0.01 0.17 7.24 24.14 0.17 0.35 16 23 C -0.15 -1.83 10.62 22.42 0.24 -1.59 16 24 C -0.22 -2.06 10.88 22.10 0.24 -1.82 16 25 C -0.02 -0.18 12.08 67.04 0.81 0.62 16 26 O -0.18 -3.79 10.67 -6.65 -0.07 -3.86 16 27 N -0.45 -12.38 7.57 -180.10 -1.36 -13.74 16 28 C 0.10 4.01 6.49 86.85 0.56 4.57 16 29 H 0.00 0.20 6.68 -2.39 -0.02 0.19 16 30 H 0.04 1.86 6.28 -2.39 -0.02 1.84 16 31 H 0.03 1.51 7.25 -2.39 -0.02 1.49 16 32 H 0.26 15.89 6.31 -92.71 -0.58 15.30 16 33 H 0.07 2.58 6.99 -2.39 -0.02 2.56 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.44 7.50 -2.39 -0.02 2.42 16 36 H 0.07 2.38 7.61 -2.38 -0.02 2.37 16 37 H 0.21 3.66 7.99 -2.91 -0.02 3.63 16 38 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.24 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.06 2.66 8.04 -2.39 -0.02 2.64 16 42 H 0.06 2.63 6.26 -2.39 -0.01 2.62 16 Total: -1.00 -76.00 364.43 3.44 -72.56 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.25 Total: 10.37 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.35 Total: 15.01 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.78 Total: -127.42 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.14 Total: -27.25 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.06 Total: 53.73 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.30 Total: 3.01 kcal Total: -76.00 3.44 -72.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972194161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.658 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds