Wall clock time and date at job start Wed Apr 1 2020 04:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99906 * 2 1 4 4 H 1.08002 * 120.00047 * 160.18899 * 3 2 1 5 5 C 1.38815 * 119.99838 * 339.91217 * 3 2 1 6 6 N 1.31611 * 119.99683 * 347.52068 * 5 3 2 7 7 Si 1.86794 * 119.99881 * 167.51716 * 5 3 2 8 8 H 1.48509 * 109.46948 * 90.00261 * 7 5 3 9 9 H 1.48497 * 109.47337 * 209.99938 * 7 5 3 10 10 H 1.48502 * 109.47353 * 330.00601 * 7 5 3 11 11 C 1.46498 * 120.00353 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88795 * 177.57446 * 11 2 1 13 13 C 1.55158 * 111.00261 * 53.65376 * 11 2 1 14 14 C 1.54325 * 102.94617 * 206.42462 * 13 11 2 15 15 N 1.47022 * 107.26806 * 22.18895 * 14 13 11 16 16 C 1.34779 * 125.65091 * 181.09545 * 15 14 13 17 17 O 1.21723 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.46430 * 119.99684 * 359.96110 * 16 15 14 19 19 C 1.36855 * 126.11379 * 179.71394 * 18 16 15 20 20 N 1.30656 * 114.05313 * 179.78400 * 19 18 16 21 21 C 1.30434 * 117.26757 * 0.52780 * 20 19 18 22 22 C 1.47646 * 124.75516 * 179.72766 * 21 20 19 23 23 C 1.46919 * 127.16171 * 359.68198 * 22 21 20 24 24 C 1.34254 * 105.99368 * 179.83210 * 23 22 21 25 25 O 1.34195 * 109.09254 * 0.43424 * 24 23 22 26 26 C 1.33912 * 110.83706 * 359.71270 * 25 24 23 27 27 S 1.70917 * 110.49053 * 359.70325 * 21 20 19 28 28 C 1.47432 * 108.70538 * 1.06109 * 15 14 13 29 29 H 1.08995 * 109.46956 * 84.84518 * 1 2 3 30 30 H 1.09007 * 109.47013 * 204.83915 * 1 2 3 31 31 H 1.08993 * 109.47441 * 324.84201 * 1 2 3 32 32 H 0.97007 * 119.99666 * 179.97438 * 6 5 3 33 33 H 1.09009 * 110.72033 * 324.78712 * 13 11 2 34 34 H 1.09003 * 110.72304 * 88.05545 * 13 11 2 35 35 H 1.09000 * 109.88299 * 262.77936 * 14 13 11 36 36 H 1.08997 * 110.01472 * 141.67951 * 14 13 11 37 37 H 1.08001 * 122.97224 * 359.96780 * 19 18 16 38 38 H 1.07996 * 127.00577 * 359.97438 * 23 22 21 39 39 H 1.08006 * 125.45535 * 180.14437 * 24 23 22 40 40 H 1.07998 * 125.80075 * 179.97438 * 26 25 24 41 41 H 1.08998 * 110.36828 * 217.03349 * 28 15 14 42 42 H 1.09000 * 110.36445 * 94.71071 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1817 1.2136 0.3170 5 6 1.5189 2.3515 -0.4129 6 7 0.3587 2.2883 -1.0311 7 14 2.3167 4.0096 -0.0911 8 1 3.1888 4.3701 -1.2378 9 1 1.2626 5.0426 0.0731 10 1 3.1331 3.9341 1.1471 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 -0.0426 13 6 1.7322 -2.1801 -1.1657 14 6 2.0382 -3.5982 -0.6396 15 7 2.0992 -3.5158 0.8271 16 6 2.3656 -4.5406 1.6610 17 8 2.3908 -4.3556 2.8639 18 6 2.6244 -5.8764 1.1200 19 6 2.9118 -6.9995 1.8474 20 7 3.0974 -8.0705 1.1224 21 6 2.9996 -7.9404 -0.1717 22 6 3.1829 -9.0363 -1.1441 23 6 3.5071 -10.4387 -0.8499 24 6 3.5702 -11.0608 -2.0379 25 8 3.3262 -10.1713 -3.0127 26 6 3.0924 -8.9561 -2.5010 27 16 2.6289 -6.3237 -0.5842 28 6 1.8217 -2.1264 1.2345 29 1 -0.3633 0.0923 -1.0235 30 1 -0.3633 -0.9327 0.4317 31 1 -0.3634 0.8401 0.5917 32 1 -0.0823 3.1028 -1.3193 33 1 0.6643 -2.0584 -1.3478 34 1 2.3047 -1.9722 -2.0697 35 1 2.9958 -3.9405 -1.0317 36 1 1.2477 -4.2860 -0.9396 37 1 2.9764 -7.0010 2.9255 38 1 3.6609 -10.8799 0.1237 39 1 3.7876 -12.1084 -2.1859 40 1 2.8703 -8.0640 -3.0678 41 1 2.4388 -1.8514 2.0899 42 1 0.7651 -2.0050 1.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972495436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:19 Heat of formation + Delta-G solvation = 66.430125 kcal Electronic energy + Delta-G solvation = -26956.542434 eV Core-core repulsion = 23031.662962 eV Total energy + Delta-G solvation = -3924.879472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.85387 -40.20827 -39.40744 -37.42780 -34.93917 -33.84458 -31.88416 -30.91082 -30.05878 -29.68732 -28.00763 -26.30161 -26.09747 -23.90376 -22.50251 -22.44646 -21.73011 -20.96678 -19.46631 -19.37679 -18.30336 -17.52948 -17.14809 -16.54229 -16.48244 -16.09577 -15.87012 -15.27522 -15.01345 -14.54280 -14.44716 -13.97512 -13.67919 -13.55275 -13.45898 -13.28746 -12.88854 -12.68697 -12.58145 -12.49486 -12.11198 -11.90512 -11.44584 -11.00193 -10.85862 -10.73697 -10.59136 -10.52953 -10.36341 -10.14866 -10.03774 -9.95317 -9.75292 -9.64118 -9.47978 -8.74971 -8.63520 -8.38935 -6.91681 -5.81887 -3.27286 -0.20443 0.88564 1.31521 1.32721 1.87156 2.54663 2.65504 2.97826 3.17699 3.33671 3.40974 3.43191 3.65534 4.21481 4.41139 4.48736 4.58644 4.71591 4.84317 5.00828 5.10520 5.13382 5.22070 5.32128 5.36049 5.49975 5.52492 5.63215 5.78707 5.85655 5.88222 5.90927 6.17292 6.24815 6.37240 6.51559 6.57045 6.69932 6.76194 7.32090 7.37400 7.55164 7.63416 7.73768 8.10777 8.27738 9.12865 9.74822 10.21495 11.22876 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.002213 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.914622 B =12650.056425 C =13440.550141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.145 4.145 14 C 0.089 3.911 15 N -0.606 5.606 16 C 0.605 3.395 17 O -0.531 6.531 18 C -0.291 4.291 19 C 0.124 3.876 20 N -0.475 5.475 21 C 0.098 3.902 22 C -0.133 4.133 23 C -0.171 4.171 24 C -0.038 4.038 25 O -0.172 6.172 26 C 0.009 3.991 27 S 0.208 5.792 28 C 0.086 3.914 29 H 0.032 0.968 30 H 0.000 1.000 31 H 0.048 0.952 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.191 0.809 38 H 0.160 0.840 39 H 0.209 0.791 40 H 0.211 0.789 41 H 0.077 0.923 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -24.595 -4.674 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.215 1.215 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.186 4.186 14 C -0.036 4.036 15 N -0.339 5.339 16 C 0.392 3.608 17 O -0.411 6.411 18 C -0.415 4.415 19 C -0.035 4.035 20 N -0.189 5.189 21 C -0.171 4.171 22 C -0.138 4.138 23 C -0.192 4.192 24 C -0.104 4.104 25 O -0.067 6.067 26 C -0.064 4.064 27 S 0.469 5.531 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.208 0.792 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.228 0.772 41 H 0.095 0.905 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.266 -24.398 -5.106 25.289 hybrid contribution 0.357 0.832 1.267 1.557 sum 4.623 -23.566 -3.839 24.320 Atomic orbital electron populations 1.20850 0.82160 0.95728 0.99685 1.43848 1.02015 0.99772 1.84894 1.19238 0.96748 0.84723 1.38207 0.91061 1.24983 0.97520 0.98510 0.98486 1.70082 1.16952 1.26943 1.41154 0.86216 0.78307 0.83642 0.78115 1.21383 1.21540 1.20457 1.21401 0.96562 0.85854 0.89894 0.90141 1.23219 1.03222 0.91389 1.00720 1.22225 1.00862 1.00226 0.80281 1.48319 1.68500 1.10002 1.07078 1.16232 0.77537 0.81498 0.85518 1.90850 1.53182 1.83327 1.13692 1.26072 1.19184 1.00470 0.95806 1.22396 0.94906 0.84545 1.01686 1.66454 1.18057 1.31116 1.03321 1.24640 1.01834 0.97585 0.93077 1.19236 1.10826 0.92737 0.90988 1.22842 1.05165 0.91595 0.99609 1.23988 1.05509 0.95439 0.85454 1.83886 1.68470 1.17164 1.37142 1.24209 1.02200 0.87712 0.92309 1.84071 1.61781 1.01323 1.05914 1.23122 1.01656 0.78238 1.00753 0.94938 0.98155 0.93336 0.93622 0.90108 0.90058 0.91357 0.91498 0.79236 0.82272 0.77402 0.77228 0.90463 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.71 7.59 59.85 0.45 4.16 16 2 N -0.59 -13.72 2.96 -171.03 -0.51 -14.23 16 3 C -0.26 -6.80 9.65 -15.06 -0.15 -6.94 16 4 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -25.31 10.51 55.49 0.58 -24.73 16 7 Si 0.91 21.22 29.57 -169.99 -5.03 16.19 16 8 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.29 3.54 -65.78 -0.23 3.05 16 12 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 13 C -0.15 -2.25 6.51 -24.89 -0.16 -2.41 16 14 C 0.09 1.15 5.19 -3.06 -0.02 1.14 16 15 N -0.61 -9.57 3.33 -172.15 -0.57 -10.15 16 16 C 0.61 9.92 7.81 -12.96 -0.10 9.81 16 17 O -0.53 -10.33 17.13 5.17 0.09 -10.24 16 18 C -0.29 -3.94 6.43 -36.79 -0.24 -4.17 16 19 C 0.12 1.62 11.15 -18.55 -0.21 1.41 16 20 N -0.47 -6.10 10.52 -12.04 -0.13 -6.23 16 21 C 0.10 1.10 7.25 -14.31 -0.10 1.00 16 22 C -0.13 -1.26 6.32 -103.26 -0.65 -1.91 16 23 C -0.17 -1.39 11.14 -37.47 -0.42 -1.81 16 24 C -0.04 -0.23 12.03 29.33 0.35 0.13 16 25 O -0.17 -1.24 10.54 7.04 0.07 -1.17 16 26 C 0.01 0.06 11.83 30.01 0.36 0.42 16 27 S 0.21 2.12 18.36 -107.50 -1.97 0.15 16 28 C 0.09 1.54 6.46 -2.53 -0.02 1.53 16 29 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 30 H 0.00 0.00 6.33 -51.92 -0.33 -0.33 16 31 H 0.05 1.24 7.12 -51.93 -0.37 0.87 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.08 1.33 7.08 -51.92 -0.37 0.96 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.77 6.86 -51.93 -0.36 0.42 16 36 H 0.07 0.76 7.01 -51.93 -0.36 0.40 16 37 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.21 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 42 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -32.37 362.92 -8.20 -40.57 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.99 Total: -1.05 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.22 Total: 5.41 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.62 Total: -55.33 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.16 Total: -11.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.97 Total: 0.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.37 -8.20 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.999 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds