Wall clock time and date at job start Wed Apr 1 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99906 * 2 1 4 4 H 1.08002 * 120.00047 * 160.18899 * 3 2 1 5 5 C 1.38815 * 119.99838 * 339.91217 * 3 2 1 6 6 N 1.31611 * 119.99683 * 347.52068 * 5 3 2 7 7 Si 1.86794 * 119.99881 * 167.51716 * 5 3 2 8 8 H 1.48509 * 109.46948 * 90.00261 * 7 5 3 9 9 H 1.48497 * 109.47337 * 209.99938 * 7 5 3 10 10 H 1.48502 * 109.47353 * 330.00601 * 7 5 3 11 11 C 1.46498 * 120.00353 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88795 * 177.57446 * 11 2 1 13 13 C 1.55158 * 111.00261 * 53.65376 * 11 2 1 14 14 C 1.54325 * 102.94617 * 206.42462 * 13 11 2 15 15 N 1.47022 * 107.26806 * 22.18895 * 14 13 11 16 16 C 1.34779 * 125.65091 * 181.09545 * 15 14 13 17 17 O 1.21723 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.46430 * 119.99684 * 359.96110 * 16 15 14 19 19 C 1.36855 * 126.11379 * 179.71394 * 18 16 15 20 20 N 1.30656 * 114.05313 * 179.78400 * 19 18 16 21 21 C 1.30434 * 117.26757 * 0.52780 * 20 19 18 22 22 C 1.47646 * 124.75516 * 179.72766 * 21 20 19 23 23 C 1.46919 * 127.16171 * 359.68198 * 22 21 20 24 24 C 1.34254 * 105.99368 * 179.83210 * 23 22 21 25 25 O 1.34195 * 109.09254 * 0.43424 * 24 23 22 26 26 C 1.33912 * 110.83706 * 359.71270 * 25 24 23 27 27 S 1.70917 * 110.49053 * 359.70325 * 21 20 19 28 28 C 1.47432 * 108.70538 * 1.06109 * 15 14 13 29 29 H 1.08995 * 109.46956 * 84.84518 * 1 2 3 30 30 H 1.09007 * 109.47013 * 204.83915 * 1 2 3 31 31 H 1.08993 * 109.47441 * 324.84201 * 1 2 3 32 32 H 0.97007 * 119.99666 * 179.97438 * 6 5 3 33 33 H 1.09009 * 110.72033 * 324.78712 * 13 11 2 34 34 H 1.09003 * 110.72304 * 88.05545 * 13 11 2 35 35 H 1.09000 * 109.88299 * 262.77936 * 14 13 11 36 36 H 1.08997 * 110.01472 * 141.67951 * 14 13 11 37 37 H 1.08001 * 122.97224 * 359.96780 * 19 18 16 38 38 H 1.07996 * 127.00577 * 359.97438 * 23 22 21 39 39 H 1.08006 * 125.45535 * 180.14437 * 24 23 22 40 40 H 1.07998 * 125.80075 * 179.97438 * 26 25 24 41 41 H 1.08998 * 110.36828 * 217.03349 * 28 15 14 42 42 H 1.09000 * 110.36445 * 94.71071 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1817 1.2136 0.3170 5 6 1.5189 2.3515 -0.4129 6 7 0.3587 2.2883 -1.0311 7 14 2.3167 4.0096 -0.0911 8 1 3.1888 4.3701 -1.2378 9 1 1.2626 5.0426 0.0731 10 1 3.1331 3.9341 1.1471 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 -0.0426 13 6 1.7322 -2.1801 -1.1657 14 6 2.0382 -3.5982 -0.6396 15 7 2.0992 -3.5158 0.8271 16 6 2.3656 -4.5406 1.6610 17 8 2.3908 -4.3556 2.8639 18 6 2.6244 -5.8764 1.1200 19 6 2.9118 -6.9995 1.8474 20 7 3.0974 -8.0705 1.1224 21 6 2.9996 -7.9404 -0.1717 22 6 3.1829 -9.0363 -1.1441 23 6 3.5071 -10.4387 -0.8499 24 6 3.5702 -11.0608 -2.0379 25 8 3.3262 -10.1713 -3.0127 26 6 3.0924 -8.9561 -2.5010 27 16 2.6289 -6.3237 -0.5842 28 6 1.8217 -2.1264 1.2345 29 1 -0.3633 0.0923 -1.0235 30 1 -0.3633 -0.9327 0.4317 31 1 -0.3634 0.8401 0.5917 32 1 -0.0823 3.1028 -1.3193 33 1 0.6643 -2.0584 -1.3478 34 1 2.3047 -1.9722 -2.0697 35 1 2.9958 -3.9405 -1.0317 36 1 1.2477 -4.2860 -0.9396 37 1 2.9764 -7.0010 2.9255 38 1 3.6609 -10.8799 0.1237 39 1 3.7876 -12.1084 -2.1859 40 1 2.8703 -8.0640 -3.0678 41 1 2.4388 -1.8514 2.0899 42 1 0.7651 -2.0050 1.4733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972495436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:18 Heat of formation + Delta-G solvation = 45.914589 kcal Electronic energy + Delta-G solvation = -26957.432054 eV Core-core repulsion = 23031.662962 eV Total energy + Delta-G solvation = -3925.769092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.40104 -41.38525 -40.48879 -38.85434 -36.64146 -34.52143 -33.56872 -31.85169 -31.33874 -30.60448 -29.36456 -28.07474 -27.21334 -25.35549 -24.00237 -23.25551 -22.36253 -21.92448 -20.99774 -20.15819 -19.40658 -18.97922 -18.29006 -17.66360 -17.57590 -17.03985 -16.92949 -16.56166 -15.99527 -15.85346 -15.48948 -15.30848 -15.04709 -14.92081 -14.43404 -14.34373 -14.28234 -13.90689 -13.81869 -13.57185 -13.30911 -13.13884 -12.83041 -12.73013 -12.49211 -12.40502 -12.17414 -12.11512 -11.86302 -11.56360 -11.48706 -11.40415 -10.77311 -10.64030 -10.53594 -10.13675 -9.85645 -9.28129 -8.83426 -7.83663 -5.30066 -1.09718 0.00575 0.41490 0.67974 1.16940 1.47549 1.50027 1.58250 1.72371 1.75025 2.07526 2.10847 2.51254 2.87876 3.26569 3.41371 3.46159 3.73887 3.83281 3.88214 3.97171 4.04355 4.07679 4.18228 4.22369 4.35367 4.52130 4.56339 4.70480 4.77833 4.84377 4.93879 4.96235 5.03632 5.07024 5.18125 5.28620 5.36102 5.41015 5.63640 5.74738 6.03456 6.27502 6.30181 6.51600 6.84842 7.13795 7.83742 8.25966 9.19437 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.002213 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.914622 B =12650.056425 C =13440.550141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.073 0.927 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.275 1.275 11 C 0.167 3.833 12 H 0.078 0.922 13 C -0.133 4.133 14 C 0.093 3.907 15 N -0.608 5.608 16 C 0.606 3.394 17 O -0.574 6.574 18 C -0.328 4.328 19 C 0.130 3.870 20 N -0.502 5.502 21 C 0.103 3.897 22 C -0.173 4.173 23 C -0.198 4.198 24 C -0.021 4.021 25 O -0.174 6.174 26 C 0.030 3.970 27 S 0.275 5.725 28 C 0.098 3.902 29 H 0.013 0.987 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.190 0.810 38 H 0.156 0.844 39 H 0.247 0.753 40 H 0.242 0.758 41 H 0.060 0.940 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -26.826 -6.916 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.091 0.909 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.209 1.209 9 H -0.222 1.222 10 H -0.200 1.200 11 C 0.058 3.942 12 H 0.097 0.903 13 C -0.173 4.173 14 C -0.031 4.031 15 N -0.340 5.340 16 C 0.395 3.605 17 O -0.456 6.456 18 C -0.453 4.453 19 C -0.031 4.031 20 N -0.217 5.217 21 C -0.165 4.165 22 C -0.178 4.178 23 C -0.220 4.220 24 C -0.086 4.086 25 O -0.069 6.069 26 C -0.043 4.043 27 S 0.537 5.463 28 C -0.027 4.027 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.207 0.793 38 H 0.174 0.826 39 H 0.263 0.737 40 H 0.257 0.743 41 H 0.078 0.922 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.191 -26.669 -7.382 28.155 hybrid contribution 0.129 1.316 1.900 2.315 sum 5.320 -25.354 -5.482 26.480 Atomic orbital electron populations 1.20539 0.82387 0.95672 0.98051 1.43981 1.02154 1.00758 1.85330 1.19540 0.96888 0.85999 1.37051 0.90932 1.25676 0.98277 1.01457 0.99060 1.70225 1.18180 1.27151 1.42534 0.85280 0.77257 0.79878 0.78035 1.20927 1.22154 1.19978 1.21525 0.96094 0.84810 0.91770 0.90333 1.23042 1.02830 0.91776 0.99676 1.22344 1.03140 0.99218 0.78356 1.48308 1.68460 1.08937 1.08289 1.16543 0.76563 0.82363 0.85013 1.90815 1.55024 1.84198 1.15535 1.25770 1.22008 0.99023 0.98464 1.22477 0.93940 0.84650 1.02014 1.66517 1.19833 1.31115 1.04240 1.25044 0.99732 0.98749 0.92998 1.19463 1.13545 0.93034 0.91773 1.22991 1.06858 0.91602 1.00528 1.24648 1.03148 0.96513 0.84314 1.83933 1.68092 1.17383 1.37493 1.24769 0.99501 0.88458 0.91600 1.83560 1.60593 0.99715 1.02441 1.22763 1.00575 0.79688 0.99702 0.96839 0.95482 0.96492 0.94211 0.90850 0.88670 0.88854 0.89031 0.79306 0.82617 0.73733 0.74250 0.92170 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.39 7.59 127.77 0.97 9.36 16 2 N -0.60 -28.37 2.96 -695.03 -2.06 -30.43 16 3 C -0.26 -13.94 9.65 84.03 0.81 -13.13 16 4 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 5 C -0.05 -2.68 5.12 84.86 0.43 -2.24 16 6 N -0.93 -53.15 10.51 21.65 0.23 -52.93 16 7 Si 0.97 44.05 29.57 68.60 2.03 46.08 16 8 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 9 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 C 0.17 6.22 3.54 46.38 0.16 6.39 16 12 H 0.08 2.94 7.94 -2.39 -0.02 2.92 16 13 C -0.13 -3.85 6.51 31.78 0.21 -3.65 16 14 C 0.09 2.15 5.19 86.73 0.45 2.60 16 15 N -0.61 -18.56 3.33 -816.75 -2.72 -21.28 16 16 C 0.61 19.70 7.81 86.38 0.67 20.37 16 17 O -0.57 -22.89 17.13 -4.42 -0.08 -22.97 16 18 C -0.33 -8.55 6.43 24.08 0.15 -8.39 16 19 C 0.13 3.37 11.15 84.54 0.94 4.31 16 20 N -0.50 -12.51 10.52 -192.00 -2.02 -14.53 16 21 C 0.10 2.11 7.25 87.39 0.63 2.75 16 22 C -0.17 -2.85 6.32 -18.98 -0.12 -2.97 16 23 C -0.20 -2.86 11.14 23.64 0.26 -2.60 16 24 C -0.02 -0.18 12.03 66.91 0.81 0.62 16 25 O -0.17 -1.88 10.54 2.27 0.02 -1.86 16 26 C 0.03 0.32 11.83 67.35 0.80 1.12 16 27 S 0.27 4.80 18.36 -56.49 -1.04 3.76 16 28 C 0.10 3.50 6.46 86.85 0.56 4.06 16 29 H 0.01 0.68 7.42 -2.39 -0.02 0.66 16 30 H 0.03 1.10 6.33 -2.38 -0.02 1.08 16 31 H 0.02 0.87 7.12 -2.39 -0.02 0.85 16 32 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 33 H 0.07 2.27 7.08 -2.38 -0.02 2.25 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 1.75 6.86 -2.39 -0.02 1.73 16 36 H 0.09 1.74 7.01 -2.39 -0.02 1.72 16 37 H 0.19 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.25 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.24 0.78 8.06 -2.91 -0.02 0.75 16 41 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 42 H 0.06 2.37 6.33 -2.39 -0.02 2.35 16 Total: -1.00 -72.24 362.92 3.18 -69.06 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.06 Total: 6.49 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 7.75 Total: 18.60 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.57 Total: -119.16 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.04 Total: 3.76 kcal Total: -72.24 3.18 -69.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.973 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds