Wall clock time and date at job start Wed Apr 1 2020 04:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99817 * 2 1 4 4 H 1.07998 * 120.00261 * 161.07782 * 3 2 1 5 5 C 1.38815 * 120.00101 * 340.79778 * 3 2 1 6 6 N 1.31615 * 119.99945 * 346.78670 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 166.79054 * 5 3 2 8 8 H 1.48497 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47084 * 120.00288 * 7 5 3 10 10 H 1.48503 * 109.47096 * 239.99788 * 7 5 3 11 11 C 1.46499 * 120.00154 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64104 * 181.68838 * 11 2 1 13 13 C 1.55148 * 110.72077 * 305.02794 * 11 2 1 14 14 C 1.54913 * 101.58284 * 153.86273 * 13 11 2 15 15 N 1.47419 * 104.83111 * 322.98799 * 14 13 11 16 16 C 1.34779 * 125.65058 * 204.09194 * 15 14 13 17 17 O 1.21628 * 120.00346 * 180.02562 * 16 15 14 18 18 C 1.47267 * 119.99738 * 0.04095 * 16 15 14 19 19 C 1.35082 * 122.43192 * 179.97438 * 18 16 15 20 20 S 1.71002 * 109.14785 * 179.97438 * 19 18 16 21 21 C 1.76002 * 90.59167 * 0.02562 * 20 19 18 22 22 C 1.47870 * 125.31844 * 180.02562 * 21 20 19 23 23 C 1.46853 * 127.14428 * 359.67924 * 22 21 20 24 24 C 1.34313 * 106.00611 * 179.89187 * 23 22 21 25 25 O 1.34168 * 109.05030 * 0.37712 * 24 23 22 26 26 C 1.34000 * 110.80898 * 359.74963 * 25 24 23 27 27 N 1.29881 * 109.35693 * 359.75513 * 21 20 19 28 28 C 1.47024 * 108.70435 * 24.12833 * 15 14 13 29 29 H 1.09004 * 109.47268 * 84.81702 * 1 2 3 30 30 H 1.08997 * 109.46963 * 204.81074 * 1 2 3 31 31 H 1.09000 * 109.47184 * 324.81985 * 1 2 3 32 32 H 0.96996 * 120.00040 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.00446 * 271.93921 * 13 11 2 34 34 H 1.09005 * 111.01065 * 35.79060 * 13 11 2 35 35 H 1.09002 * 110.36334 * 204.14977 * 14 13 11 36 36 H 1.08996 * 110.45620 * 81.87737 * 14 13 11 37 37 H 1.08001 * 125.42566 * 359.96128 * 19 18 16 38 38 H 1.07996 * 126.99746 * 0.02562 * 23 22 21 39 39 H 1.08002 * 125.46860 * 180.12558 * 24 23 22 40 40 H 1.07993 * 125.79351 * 180.02562 * 26 25 24 41 41 H 1.08995 * 109.88250 * 239.51817 * 28 15 14 42 42 H 1.09002 * 109.88094 * 118.35618 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1858 1.2112 0.3033 5 6 1.5135 2.3546 -0.3954 6 7 0.3519 2.2955 -1.0114 7 14 2.3061 4.0111 -0.0533 8 1 3.5997 3.8058 0.6464 9 1 2.5437 4.7206 -1.3361 10 1 1.4047 4.8240 0.8022 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1893 14 6 2.0638 -3.5780 0.6497 15 7 1.7324 -3.5173 -0.7855 16 6 1.4056 -4.5697 -1.5615 17 8 1.1504 -4.4014 -2.7387 18 6 1.3573 -5.9235 -0.9838 19 6 1.0354 -7.0124 -1.7156 20 16 1.0842 -8.3966 -0.7128 21 6 1.5453 -7.4042 0.6657 22 6 1.8009 -7.9061 2.0329 23 6 1.7154 -9.2965 2.4976 24 6 2.0331 -9.2712 3.8023 25 8 2.2916 -8.0057 4.1656 26 6 2.1583 -7.1745 3.1231 27 7 1.6315 -6.1630 0.2929 28 6 1.8182 -2.1186 -1.2305 29 1 -0.3634 0.0928 -1.0235 30 1 -0.3633 -0.9328 0.4312 31 1 -0.3633 0.8400 0.5921 32 1 -0.0929 3.1122 -1.2873 33 1 2.3372 -1.9434 2.0821 34 1 0.6849 -2.0435 1.3861 35 1 1.4430 -4.3203 1.1513 36 1 3.1194 -3.8128 0.7857 37 1 0.7867 -7.0091 -2.7666 38 1 1.4529 -10.1633 1.9093 39 1 2.0703 -10.1308 4.4551 40 1 2.3095 -6.1054 3.1444 41 1 0.8541 -1.7944 -1.6221 42 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972566639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:43 Heat of formation + Delta-G solvation = 71.603040 kcal Electronic energy + Delta-G solvation = -27451.322863 eV Core-core repulsion = 23526.667706 eV Total energy + Delta-G solvation = -3924.655157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.80974 -40.53946 -38.78215 -37.29280 -34.76816 -33.81593 -31.63580 -31.02840 -29.67419 -29.40299 -28.17039 -26.10760 -25.85527 -24.27859 -22.53458 -22.12419 -22.08517 -20.18087 -19.20081 -19.17809 -18.43109 -17.81477 -17.02716 -16.41742 -16.20233 -15.91882 -15.73096 -15.23981 -14.99173 -14.49329 -14.23564 -13.76882 -13.56581 -13.36575 -13.30403 -13.27534 -12.66465 -12.58247 -12.55448 -12.19490 -11.99198 -11.79347 -11.45578 -10.89455 -10.80868 -10.78699 -10.55694 -10.41248 -10.27894 -10.11242 -9.86086 -9.81575 -9.79870 -9.64443 -9.41327 -8.58071 -8.55576 -8.19960 -6.83609 -5.73813 -3.18412 0.08308 0.90655 1.33105 1.33421 1.66276 2.49960 2.62307 3.23671 3.38042 3.44811 3.46780 3.47272 3.60172 4.36413 4.41112 4.48479 4.69221 4.91490 5.03112 5.10033 5.15022 5.28202 5.32743 5.42770 5.57982 5.66636 5.69425 5.72881 5.84387 5.93952 6.01739 6.18986 6.38899 6.45621 6.60823 6.62776 6.70310 6.85730 6.91149 7.21198 7.40677 7.72865 7.81544 7.81659 8.32649 8.36995 9.20747 9.83626 10.31190 11.30791 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002542 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.853613 B =11012.310868 C =12350.032241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.257 4.257 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.156 4.156 14 C 0.105 3.895 15 N -0.592 5.592 16 C 0.595 3.405 17 O -0.542 6.542 18 C 0.029 3.971 19 C -0.220 4.220 20 S 0.172 5.828 21 C 0.127 3.873 22 C -0.138 4.138 23 C -0.199 4.199 24 C -0.028 4.028 25 O -0.175 6.175 26 C 0.040 3.960 27 N -0.435 5.435 28 C 0.086 3.914 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.191 0.809 38 H 0.156 0.844 39 H 0.208 0.792 40 H 0.218 0.782 41 H 0.074 0.926 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -27.111 8.790 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.308 5.308 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.218 1.218 10 H -0.216 1.216 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.196 4.196 14 C -0.018 4.018 15 N -0.323 5.323 16 C 0.380 3.620 17 O -0.420 6.420 18 C -0.107 4.107 19 C -0.362 4.362 20 S 0.431 5.569 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.219 4.219 24 C -0.094 4.094 25 O -0.070 6.070 26 C -0.034 4.034 27 N -0.151 5.151 28 C -0.038 4.038 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.208 0.792 38 H 0.174 0.826 39 H 0.225 0.775 40 H 0.234 0.766 41 H 0.093 0.907 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.276 -27.444 8.482 28.815 hybrid contribution 0.237 1.682 -0.739 1.852 sum 2.514 -25.762 7.743 27.018 Atomic orbital electron populations 1.20821 0.82261 0.95654 0.99557 1.43977 1.02022 0.99918 1.84842 1.19305 0.96355 0.84579 1.38428 0.90966 1.25000 0.97587 0.98476 0.98677 1.70112 1.16870 1.26610 1.41523 0.86144 0.78547 0.84074 0.77505 1.20300 1.21754 1.21619 1.21351 0.96339 0.85843 0.90210 0.90350 1.23406 1.02661 0.93725 0.99827 1.22549 1.00491 0.98499 0.80229 1.48312 1.65386 1.07400 1.11220 1.16765 0.78144 0.81943 0.85124 1.90813 1.51061 1.84726 1.15384 1.20176 1.05904 0.96039 0.88536 1.26463 1.07179 0.95652 1.06934 1.83717 1.62126 1.10371 1.00733 1.24903 1.03105 0.90472 0.96420 1.19032 1.11705 0.93544 0.90019 1.22760 1.07783 0.95787 0.95568 1.23916 1.03912 0.85441 0.96152 1.83941 1.68715 1.17214 1.37122 1.24422 0.99301 0.96313 0.83353 1.67267 1.16674 1.16928 1.14197 1.23003 1.02462 0.78407 0.99963 0.95278 0.98081 0.93325 0.93713 0.90470 0.90581 0.89050 0.91953 0.79180 0.82642 0.77497 0.76591 0.90727 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 7.72 59.85 0.46 4.46 16 2 N -0.59 -14.50 2.94 -171.39 -0.50 -15.01 16 3 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -26.46 10.50 55.49 0.58 -25.87 16 7 Si 0.91 21.76 29.57 -169.99 -5.03 16.73 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 C 0.17 3.49 3.45 -66.10 -0.23 3.27 16 12 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 13 C -0.16 -2.57 6.59 -24.59 -0.16 -2.73 16 14 C 0.11 1.56 6.01 -2.53 -0.02 1.55 16 15 N -0.59 -10.57 3.33 -171.84 -0.57 -11.14 16 16 C 0.60 10.83 7.82 -12.59 -0.10 10.73 16 17 O -0.54 -11.42 16.98 5.25 0.09 -11.33 16 18 C 0.03 0.42 6.57 -84.92 -0.56 -0.13 16 19 C -0.22 -2.66 10.56 29.61 0.31 -2.35 16 20 S 0.17 1.54 23.07 -107.50 -2.48 -0.94 16 21 C 0.13 1.36 7.46 -14.44 -0.11 1.25 16 22 C -0.14 -1.24 6.32 -103.25 -0.65 -1.89 16 23 C -0.20 -1.30 11.04 -37.48 -0.41 -1.71 16 24 C -0.03 -0.15 12.04 29.35 0.35 0.20 16 25 O -0.17 -1.31 10.54 6.88 0.07 -1.24 16 26 C 0.04 0.32 12.05 29.95 0.36 0.68 16 27 N -0.44 -5.65 7.22 -8.11 -0.06 -5.71 16 28 C 0.09 1.74 6.50 -3.06 -0.02 1.72 16 29 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 30 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 31 H 0.05 1.29 7.08 -51.93 -0.37 0.92 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.34 6.14 -51.93 -0.32 1.02 16 35 H 0.09 1.26 6.00 -51.93 -0.31 0.95 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.19 2.12 7.99 -52.49 -0.42 1.70 16 38 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.21 0.31 8.06 -52.49 -0.42 -0.12 16 40 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.07 1.71 7.06 -51.93 -0.37 1.35 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.41 364.77 -8.38 -41.79 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.98 Total: -0.65 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.00 Total: 7.89 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.55 Total: -57.74 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.16 Total: -12.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.48 Total: -0.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.41 -8.38 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972566639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.392 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds