Wall clock time and date at job start Wed Apr 1 2020 04:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99817 * 2 1 4 4 H 1.07998 * 120.00261 * 161.07782 * 3 2 1 5 5 C 1.38815 * 120.00101 * 340.79778 * 3 2 1 6 6 N 1.31615 * 119.99945 * 346.78670 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 166.79054 * 5 3 2 8 8 H 1.48497 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47084 * 120.00288 * 7 5 3 10 10 H 1.48503 * 109.47096 * 239.99788 * 7 5 3 11 11 C 1.46499 * 120.00154 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64104 * 181.68838 * 11 2 1 13 13 C 1.55148 * 110.72077 * 305.02794 * 11 2 1 14 14 C 1.54913 * 101.58284 * 153.86273 * 13 11 2 15 15 N 1.47419 * 104.83111 * 322.98799 * 14 13 11 16 16 C 1.34779 * 125.65058 * 204.09194 * 15 14 13 17 17 O 1.21628 * 120.00346 * 180.02562 * 16 15 14 18 18 C 1.47267 * 119.99738 * 0.04095 * 16 15 14 19 19 C 1.35082 * 122.43192 * 179.97438 * 18 16 15 20 20 S 1.71002 * 109.14785 * 179.97438 * 19 18 16 21 21 C 1.76002 * 90.59167 * 0.02562 * 20 19 18 22 22 C 1.47870 * 125.31844 * 180.02562 * 21 20 19 23 23 C 1.46853 * 127.14428 * 359.67924 * 22 21 20 24 24 C 1.34313 * 106.00611 * 179.89187 * 23 22 21 25 25 O 1.34168 * 109.05030 * 0.37712 * 24 23 22 26 26 C 1.34000 * 110.80898 * 359.74963 * 25 24 23 27 27 N 1.29881 * 109.35693 * 359.75513 * 21 20 19 28 28 C 1.47024 * 108.70435 * 24.12833 * 15 14 13 29 29 H 1.09004 * 109.47268 * 84.81702 * 1 2 3 30 30 H 1.08997 * 109.46963 * 204.81074 * 1 2 3 31 31 H 1.09000 * 109.47184 * 324.81985 * 1 2 3 32 32 H 0.96996 * 120.00040 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.00446 * 271.93921 * 13 11 2 34 34 H 1.09005 * 111.01065 * 35.79060 * 13 11 2 35 35 H 1.09002 * 110.36334 * 204.14977 * 14 13 11 36 36 H 1.08996 * 110.45620 * 81.87737 * 14 13 11 37 37 H 1.08001 * 125.42566 * 359.96128 * 19 18 16 38 38 H 1.07996 * 126.99746 * 0.02562 * 23 22 21 39 39 H 1.08002 * 125.46860 * 180.12558 * 24 23 22 40 40 H 1.07993 * 125.79351 * 180.02562 * 26 25 24 41 41 H 1.08995 * 109.88250 * 239.51817 * 28 15 14 42 42 H 1.09002 * 109.88094 * 118.35618 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1858 1.2112 0.3033 5 6 1.5135 2.3546 -0.3954 6 7 0.3519 2.2955 -1.0114 7 14 2.3061 4.0111 -0.0533 8 1 3.5997 3.8058 0.6464 9 1 2.5437 4.7206 -1.3361 10 1 1.4047 4.8240 0.8022 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1893 14 6 2.0638 -3.5780 0.6497 15 7 1.7324 -3.5173 -0.7855 16 6 1.4056 -4.5697 -1.5615 17 8 1.1504 -4.4014 -2.7387 18 6 1.3573 -5.9235 -0.9838 19 6 1.0354 -7.0124 -1.7156 20 16 1.0842 -8.3966 -0.7128 21 6 1.5453 -7.4042 0.6657 22 6 1.8009 -7.9061 2.0329 23 6 1.7154 -9.2965 2.4976 24 6 2.0331 -9.2712 3.8023 25 8 2.2916 -8.0057 4.1656 26 6 2.1583 -7.1745 3.1231 27 7 1.6315 -6.1630 0.2929 28 6 1.8182 -2.1186 -1.2305 29 1 -0.3634 0.0928 -1.0235 30 1 -0.3633 -0.9328 0.4312 31 1 -0.3633 0.8400 0.5921 32 1 -0.0929 3.1122 -1.2873 33 1 2.3372 -1.9434 2.0821 34 1 0.6849 -2.0435 1.3861 35 1 1.4430 -4.3203 1.1513 36 1 3.1194 -3.8128 0.7857 37 1 0.7867 -7.0091 -2.7666 38 1 1.4529 -10.1633 1.9093 39 1 2.0703 -10.1308 4.4551 40 1 2.3095 -6.1054 3.1444 41 1 0.8541 -1.7944 -1.6221 42 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972566639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:42 Heat of formation + Delta-G solvation = 50.454450 kcal Electronic energy + Delta-G solvation = -27452.239935 eV Core-core repulsion = 23526.667706 eV Total energy + Delta-G solvation = -3925.572229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.31312 -41.71915 -40.03362 -38.82438 -36.59412 -34.44570 -33.48326 -31.76903 -31.26391 -30.07754 -29.70527 -28.11159 -27.00469 -25.54339 -24.21402 -23.28637 -22.59039 -21.02319 -20.84816 -20.09944 -19.47996 -18.98052 -18.55443 -17.57298 -17.25352 -16.97312 -16.90310 -16.65419 -16.06105 -15.86447 -15.25339 -15.12209 -15.03552 -14.76762 -14.43447 -14.24037 -14.03892 -13.81678 -13.74455 -13.37080 -13.25333 -13.15149 -12.91470 -12.78727 -12.52357 -12.40026 -12.23325 -12.07493 -11.80569 -11.55294 -11.51601 -11.34199 -10.78974 -10.63469 -10.57059 -10.01192 -9.72356 -9.21029 -8.87545 -7.83780 -5.31088 -0.75938 0.11149 0.45129 0.48490 1.08477 1.47783 1.48546 1.59582 1.73638 1.91651 2.16690 2.27864 2.50949 2.74858 3.28445 3.52966 3.56036 3.84395 3.86345 3.93288 4.05822 4.14565 4.20555 4.26623 4.36339 4.44095 4.55911 4.68820 4.77005 4.79210 4.87595 4.96133 5.05137 5.16225 5.18314 5.25156 5.33994 5.41253 5.43331 5.62500 5.70035 6.11474 6.28395 6.30089 6.45780 6.95009 7.11718 7.82421 8.26541 9.20035 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002542 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.853613 B =11012.310868 C =12350.032241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.262 4.262 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.974 3.026 8 H -0.261 1.261 9 H -0.297 1.297 10 H -0.292 1.292 11 C 0.168 3.832 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.116 3.884 15 N -0.595 5.595 16 C 0.590 3.410 17 O -0.584 6.584 18 C 0.004 3.996 19 C -0.232 4.232 20 S 0.262 5.738 21 C 0.120 3.880 22 C -0.163 4.163 23 C -0.209 4.209 24 C -0.019 4.019 25 O -0.183 6.183 26 C 0.037 3.963 27 N -0.453 5.453 28 C 0.097 3.903 29 H -0.006 1.006 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.193 0.807 38 H 0.175 0.825 39 H 0.246 0.754 40 H 0.226 0.774 41 H 0.039 0.961 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -30.171 11.290 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.392 4.392 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.224 1.224 10 H -0.218 1.218 11 C 0.059 3.941 12 H 0.104 0.896 13 C -0.180 4.180 14 C -0.006 4.006 15 N -0.326 5.326 16 C 0.377 3.623 17 O -0.466 6.466 18 C -0.131 4.131 19 C -0.375 4.375 20 S 0.522 5.478 21 C -0.156 4.156 22 C -0.168 4.168 23 C -0.229 4.229 24 C -0.084 4.084 25 O -0.078 6.078 26 C -0.037 4.037 27 N -0.169 5.169 28 C -0.028 4.028 29 H 0.012 0.988 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.210 0.790 38 H 0.192 0.808 39 H 0.262 0.738 40 H 0.242 0.758 41 H 0.057 0.943 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.585 -30.570 11.026 32.695 hybrid contribution -0.144 2.393 -1.482 2.819 sum 3.441 -28.177 9.544 29.948 Atomic orbital electron populations 1.20460 0.82841 0.95835 0.97140 1.44159 1.01990 1.01066 1.85066 1.19713 0.96774 0.85524 1.37150 0.90021 1.25828 0.98340 1.01991 0.99109 1.70298 1.18497 1.26964 1.43215 0.85096 0.78191 0.79617 0.76870 1.18514 1.22399 1.21839 1.21550 0.96338 0.84599 0.91629 0.89627 1.23283 1.02253 0.93458 0.99030 1.22656 1.01995 0.97703 0.78240 1.48370 1.65505 1.06236 1.12504 1.17340 0.76957 0.83308 0.84707 1.90771 1.52860 1.85679 1.17239 1.19693 1.09101 0.94470 0.89885 1.26712 1.06074 0.96976 1.07716 1.83388 1.59715 1.06945 0.97760 1.25246 1.02093 0.90419 0.97839 1.19240 1.13125 0.95066 0.89389 1.23031 1.08401 0.95233 0.96274 1.24698 1.01876 0.85427 0.96427 1.83963 1.68689 1.18113 1.37080 1.24659 0.98728 0.96924 0.83355 1.67149 1.17989 1.18468 1.13311 1.22606 1.00044 0.80478 0.99717 0.98782 0.95461 0.95694 0.94348 0.87865 0.91690 0.87439 0.89965 0.78987 0.80805 0.73780 0.75802 0.94265 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.37 7.72 127.77 0.99 10.35 16 2 N -0.60 -30.25 2.94 -696.16 -2.05 -32.30 16 3 C -0.26 -14.25 9.66 84.04 0.81 -13.44 16 4 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 5 C -0.06 -3.28 5.11 84.86 0.43 -2.85 16 6 N -0.94 -57.11 10.50 21.65 0.23 -56.89 16 7 Si 0.97 45.32 29.57 68.60 2.03 47.35 16 8 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 9 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 C 0.17 6.76 3.45 46.18 0.16 6.92 16 12 H 0.09 3.33 7.91 -2.39 -0.02 3.31 16 13 C -0.14 -4.42 6.59 31.98 0.21 -4.20 16 14 C 0.12 3.26 6.01 86.86 0.52 3.78 16 15 N -0.60 -21.52 3.33 -815.83 -2.71 -24.23 16 16 C 0.59 21.98 7.82 86.62 0.68 22.66 16 17 O -0.58 -25.83 16.98 -4.12 -0.07 -25.90 16 18 C 0.00 0.12 6.57 40.65 0.27 0.38 16 19 C -0.23 -5.36 10.56 67.09 0.71 -4.65 16 20 S 0.26 3.96 23.07 -56.49 -1.30 2.66 16 21 C 0.12 2.29 7.46 87.53 0.65 2.95 16 22 C -0.16 -2.49 6.32 -18.98 -0.12 -2.61 16 23 C -0.21 -2.01 11.04 23.63 0.26 -1.75 16 24 C -0.02 -0.13 12.04 66.92 0.81 0.67 16 25 O -0.18 -2.22 10.54 1.71 0.02 -2.20 16 26 C 0.04 0.51 12.05 67.31 0.81 1.32 16 27 N -0.45 -11.10 7.22 -179.57 -1.30 -12.40 16 28 C 0.10 4.09 6.50 86.73 0.56 4.65 16 29 H -0.01 -0.36 7.36 -2.39 -0.02 -0.38 16 30 H 0.03 1.22 6.13 -2.39 -0.01 1.21 16 31 H 0.02 1.36 7.08 -2.39 -0.02 1.34 16 32 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.06 2.21 6.14 -2.38 -0.01 2.19 16 35 H 0.11 2.77 6.00 -2.39 -0.01 2.76 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.19 4.23 7.99 -2.91 -0.02 4.21 16 38 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.25 -0.43 8.06 -2.91 -0.02 -0.46 16 40 H 0.23 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.04 1.92 7.06 -2.39 -0.02 1.90 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.92 364.77 3.66 -72.26 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.06 Total: 7.47 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 7.75 Total: 24.18 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.83 Total: -125.82 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.30 Total: 2.66 kcal Total: -75.92 3.66 -72.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972566639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.711 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds