Wall clock time and date at job start Wed Apr 1 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00375 * 2 1 4 4 H 1.08001 * 119.99943 * 203.55576 * 3 2 1 5 5 C 1.38806 * 119.99985 * 23.55473 * 3 2 1 6 6 N 1.31626 * 120.00277 * 11.48980 * 5 3 2 7 7 Si 1.86797 * 120.00098 * 191.49360 * 5 3 2 8 8 H 1.48507 * 109.47003 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47332 * 119.99739 * 7 5 3 10 10 H 1.48496 * 109.47116 * 239.99865 * 7 5 3 11 11 C 1.46501 * 119.99635 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.89004 * 183.87830 * 11 2 1 13 13 C 1.55168 * 111.00386 * 59.99739 * 11 2 1 14 14 C 1.54317 * 102.94155 * 206.42409 * 13 11 2 15 15 N 1.47030 * 107.27473 * 22.19194 * 14 13 11 16 16 C 1.34770 * 125.65014 * 181.01866 * 15 14 13 17 17 O 1.21705 * 120.00158 * 180.02562 * 16 15 14 18 18 C 1.46777 * 119.99973 * 359.75568 * 16 15 14 19 19 N 1.35990 * 126.65846 * 284.32462 * 18 16 15 20 20 C 1.29856 * 108.79595 * 179.88752 * 19 18 16 21 21 O 1.34163 * 109.90454 * 0.38470 * 20 19 18 22 22 C 1.34889 * 108.24262 * 359.76424 * 21 20 19 23 23 C 1.46602 * 126.81323 * 179.97438 * 22 21 20 24 24 C 1.36448 * 125.34483 * 4.92316 * 23 22 21 25 25 C 1.37575 * 114.42257 * 180.02562 * 24 23 22 26 26 C 1.33838 * 115.21233 * 359.97438 * 25 24 23 27 27 S 1.75827 * 109.97959 * 359.73320 * 26 25 24 28 28 C 1.47429 * 108.69873 * 1.28707 * 15 14 13 29 29 H 1.09001 * 109.46833 * 274.96681 * 1 2 3 30 30 H 1.09004 * 109.46547 * 34.95712 * 1 2 3 31 31 H 1.08992 * 109.47564 * 154.95858 * 1 2 3 32 32 H 0.96999 * 120.00068 * 180.02562 * 6 5 3 33 33 H 1.08998 * 110.71611 * 88.06328 * 13 11 2 34 34 H 1.08999 * 110.86939 * 324.85971 * 13 11 2 35 35 H 1.09005 * 109.88377 * 262.77807 * 14 13 11 36 36 H 1.08997 * 110.01102 * 141.68495 * 14 13 11 37 37 H 1.08001 * 125.04749 * 180.15376 * 20 19 18 38 38 H 1.08000 * 122.79284 * 359.97438 * 24 23 22 39 39 H 1.07998 * 122.39437 * 179.97438 * 25 24 23 40 40 H 1.08000 * 125.00767 * 180.02562 * 26 25 24 41 41 H 1.09009 * 110.36497 * 94.48188 * 28 15 14 42 42 H 1.08992 * 110.36584 * 216.80148 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1623 1.2248 -0.3738 5 6 1.5426 2.3379 0.4804 6 7 0.4061 2.2571 1.1395 7 14 2.3382 4.0031 0.1914 8 1 3.6009 3.8231 -0.5692 9 1 1.4116 4.8666 -0.5838 10 1 2.6349 4.6433 1.4980 11 6 2.1974 -1.2688 -0.0006 12 1 3.2717 -1.0975 0.0684 13 6 1.8482 -2.1120 -1.2554 14 6 2.1061 -3.5582 -0.7827 15 7 2.0263 -3.5585 0.6854 16 6 2.2128 -4.6294 1.4820 17 8 2.1216 -4.5126 2.6900 18 6 2.5203 -5.9379 0.8924 19 7 1.6471 -6.7720 0.2669 20 6 2.2873 -7.8326 -0.1224 21 8 3.5781 -7.7427 0.2322 22 6 3.7600 -6.5683 0.8703 23 6 5.0151 -6.0578 1.4300 24 6 6.2347 -6.6576 1.3096 25 6 7.2638 -5.9826 1.9246 26 6 6.9129 -4.8482 2.5420 27 16 5.1866 -4.5718 2.3553 28 6 1.7020 -2.1945 1.1413 29 1 -0.3633 0.0890 1.0238 30 1 -0.3632 0.8423 -0.5889 31 1 -0.3634 -0.9310 -0.4349 32 1 -0.0184 3.0622 1.4749 33 1 2.5042 -1.8554 -2.0872 34 1 0.8031 -1.9781 -1.5347 35 1 3.0978 -3.8807 -1.1001 36 1 1.3498 -4.2259 -1.1952 37 1 1.8455 -8.6651 -0.6498 38 1 6.3801 -7.5857 0.7767 39 1 8.2820 -6.3424 1.9101 40 1 7.5911 -4.1962 3.0724 41 1 0.6262 -2.0868 1.2804 42 1 2.2296 -1.9688 2.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972567762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:26 Heat of formation + Delta-G solvation = 66.440629 kcal Electronic energy + Delta-G solvation = -28060.812217 eV Core-core repulsion = 24135.933201 eV Total energy + Delta-G solvation = -3924.879016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.45714 -39.68450 -37.90982 -37.43961 -35.03888 -34.77952 -32.21125 -31.59800 -29.82103 -28.73563 -27.78694 -26.07934 -25.12160 -24.45180 -22.95871 -22.45250 -22.17422 -19.90155 -19.40844 -19.31889 -18.25166 -17.47364 -17.06470 -16.92826 -16.23086 -16.02031 -15.69491 -15.24256 -14.84068 -14.43474 -14.00215 -13.67106 -13.38284 -13.33539 -13.25493 -12.95424 -12.73458 -12.49287 -12.45136 -12.35216 -11.96069 -11.63831 -11.49189 -11.04470 -10.92914 -10.86241 -10.82301 -10.50554 -10.49551 -10.27547 -10.21832 -10.01712 -9.89338 -9.81566 -8.75784 -8.62056 -8.37721 -8.27905 -6.81967 -5.77718 -3.26589 0.01583 1.08290 1.45636 1.71011 2.10449 2.44432 2.48080 2.61775 3.09097 3.35376 3.42675 3.44501 3.92553 4.29076 4.43476 4.50476 4.78842 4.99627 5.03220 5.12737 5.21076 5.28816 5.31492 5.36471 5.50962 5.58285 5.71630 5.75293 5.84422 5.89703 5.96049 6.00724 6.08939 6.28311 6.37385 6.47766 6.58850 6.76690 6.85571 7.25032 7.33724 7.63509 7.70627 7.77008 8.15591 8.33806 9.17040 9.78849 10.27892 11.26426 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003189 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.910236 B = 8778.076990 C = 9999.634942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.152 4.152 14 C 0.104 3.896 15 N -0.593 5.593 16 C 0.607 3.393 17 O -0.520 6.520 18 C -0.034 4.034 19 N -0.449 5.449 20 C 0.178 3.822 21 O -0.190 6.190 22 C 0.082 3.918 23 C -0.159 4.159 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.218 4.218 27 S 0.226 5.774 28 C 0.087 3.913 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.002 0.998 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.073 0.927 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -20.433 -3.406 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.019 4.019 15 N -0.326 5.326 16 C 0.391 3.609 17 O -0.396 6.396 18 C -0.158 4.158 19 N -0.177 5.177 20 C -0.049 4.049 21 O -0.077 6.077 22 C 0.025 3.975 23 C -0.277 4.277 24 C -0.134 4.134 25 C -0.173 4.173 26 C -0.355 4.355 27 S 0.494 5.506 28 C -0.036 4.036 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.274 0.726 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.189 0.811 41 H 0.092 0.908 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.531 -18.971 -2.239 20.921 hybrid contribution 1.812 -0.646 -0.598 2.015 sum 10.344 -19.617 -2.837 22.357 Atomic orbital electron populations 1.20831 0.82350 0.95672 0.99708 1.43860 1.01929 0.99792 1.84836 1.19253 0.98891 0.85268 1.35627 0.91151 1.25080 0.97714 0.98703 0.97788 1.70077 1.18657 1.27375 1.38631 0.86161 0.78657 0.84091 0.77466 1.20253 1.21571 1.21647 1.21505 0.96428 0.85679 0.90044 0.90195 1.23230 1.03009 0.92369 1.00636 1.22061 1.00794 0.99345 0.79692 1.48363 1.67225 1.09342 1.07675 1.16196 0.77946 0.81160 0.85596 1.90877 1.51066 1.84523 1.13138 1.21983 0.89466 0.98485 1.05855 1.70723 1.32446 1.02381 1.12167 1.28073 0.76754 0.99675 1.00411 1.84437 1.31708 1.34582 1.56985 1.20306 0.93225 0.84959 0.98966 1.21880 0.92688 1.03048 1.10051 1.20651 0.90204 1.01338 1.01164 1.19950 1.00657 0.95860 1.00801 1.26250 0.99800 1.02580 1.06830 1.85299 1.01654 1.16628 1.46999 1.23259 1.01398 0.78453 1.00505 0.94846 0.93733 0.97978 0.93636 0.90506 0.90353 0.92253 0.91615 0.72631 0.83699 0.83709 0.81077 0.90844 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 7.55 59.85 0.45 4.22 16 2 N -0.58 -13.98 2.96 -170.89 -0.51 -14.48 16 3 C -0.26 -6.89 9.61 -15.06 -0.14 -7.03 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 5 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 6 N -0.90 -25.73 10.66 55.49 0.59 -25.14 16 7 Si 0.91 21.29 29.57 -169.99 -5.03 16.27 16 8 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.41 3.55 -65.66 -0.23 3.18 16 12 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 13 C -0.15 -2.45 6.49 -24.89 -0.16 -2.61 16 14 C 0.10 1.54 6.46 -3.06 -0.02 1.52 16 15 N -0.59 -10.24 3.32 -171.87 -0.57 -10.81 16 16 C 0.61 10.91 6.03 -12.81 -0.08 10.83 16 17 O -0.52 -10.74 16.62 5.18 0.09 -10.66 16 18 C -0.03 -0.53 6.09 -82.25 -0.50 -1.03 16 19 N -0.45 -6.20 11.33 -10.97 -0.12 -6.33 16 20 C 0.18 1.67 13.15 51.93 0.68 2.35 16 21 O -0.19 -2.10 10.75 4.45 0.05 -2.05 16 22 C 0.08 1.12 7.27 -35.89 -0.26 0.86 16 23 C -0.16 -2.04 6.44 -36.86 -0.24 -2.27 16 24 C -0.10 -1.03 10.17 -40.47 -0.41 -1.44 16 25 C -0.14 -1.28 10.14 -41.37 -0.42 -1.70 16 26 C -0.22 -2.13 11.22 29.19 0.33 -1.80 16 27 S 0.23 2.99 20.81 -107.50 -2.24 0.76 16 28 C 0.09 1.69 6.46 -2.41 -0.02 1.67 16 29 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 30 H 0.04 1.14 7.33 -51.93 -0.38 0.76 16 31 H 0.00 0.04 6.37 -51.93 -0.33 -0.29 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.31 6.47 -51.93 -0.34 0.98 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.07 1.52 6.96 -51.92 -0.36 1.16 16 42 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -32.94 366.40 -8.45 -41.39 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.13 Total: -1.30 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.11 Total: 6.84 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.61 Total: -56.76 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.13 Total: -12.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.24 Total: 0.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.94 -8.45 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972567762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.831 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds