Wall clock time and date at job start Wed Apr 1 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00375 * 2 1 4 4 H 1.08001 * 119.99943 * 203.55576 * 3 2 1 5 5 C 1.38806 * 119.99985 * 23.55473 * 3 2 1 6 6 N 1.31626 * 120.00277 * 11.48980 * 5 3 2 7 7 Si 1.86797 * 120.00098 * 191.49360 * 5 3 2 8 8 H 1.48507 * 109.47003 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47332 * 119.99739 * 7 5 3 10 10 H 1.48496 * 109.47116 * 239.99865 * 7 5 3 11 11 C 1.46501 * 119.99635 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.89004 * 183.87830 * 11 2 1 13 13 C 1.55168 * 111.00386 * 59.99739 * 11 2 1 14 14 C 1.54317 * 102.94155 * 206.42409 * 13 11 2 15 15 N 1.47030 * 107.27473 * 22.19194 * 14 13 11 16 16 C 1.34770 * 125.65014 * 181.01866 * 15 14 13 17 17 O 1.21705 * 120.00158 * 180.02562 * 16 15 14 18 18 C 1.46777 * 119.99973 * 359.75568 * 16 15 14 19 19 N 1.35990 * 126.65846 * 284.32462 * 18 16 15 20 20 C 1.29856 * 108.79595 * 179.88752 * 19 18 16 21 21 O 1.34163 * 109.90454 * 0.38470 * 20 19 18 22 22 C 1.34889 * 108.24262 * 359.76424 * 21 20 19 23 23 C 1.46602 * 126.81323 * 179.97438 * 22 21 20 24 24 C 1.36448 * 125.34483 * 4.92316 * 23 22 21 25 25 C 1.37575 * 114.42257 * 180.02562 * 24 23 22 26 26 C 1.33838 * 115.21233 * 359.97438 * 25 24 23 27 27 S 1.75827 * 109.97959 * 359.73320 * 26 25 24 28 28 C 1.47429 * 108.69873 * 1.28707 * 15 14 13 29 29 H 1.09001 * 109.46833 * 274.96681 * 1 2 3 30 30 H 1.09004 * 109.46547 * 34.95712 * 1 2 3 31 31 H 1.08992 * 109.47564 * 154.95858 * 1 2 3 32 32 H 0.96999 * 120.00068 * 180.02562 * 6 5 3 33 33 H 1.08998 * 110.71611 * 88.06328 * 13 11 2 34 34 H 1.08999 * 110.86939 * 324.85971 * 13 11 2 35 35 H 1.09005 * 109.88377 * 262.77807 * 14 13 11 36 36 H 1.08997 * 110.01102 * 141.68495 * 14 13 11 37 37 H 1.08001 * 125.04749 * 180.15376 * 20 19 18 38 38 H 1.08000 * 122.79284 * 359.97438 * 24 23 22 39 39 H 1.07998 * 122.39437 * 179.97438 * 25 24 23 40 40 H 1.08000 * 125.00767 * 180.02562 * 26 25 24 41 41 H 1.09009 * 110.36497 * 94.48188 * 28 15 14 42 42 H 1.08992 * 110.36584 * 216.80148 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1623 1.2248 -0.3738 5 6 1.5426 2.3379 0.4804 6 7 0.4061 2.2571 1.1395 7 14 2.3382 4.0031 0.1914 8 1 3.6009 3.8231 -0.5692 9 1 1.4116 4.8666 -0.5838 10 1 2.6349 4.6433 1.4980 11 6 2.1974 -1.2688 -0.0006 12 1 3.2717 -1.0975 0.0684 13 6 1.8482 -2.1120 -1.2554 14 6 2.1061 -3.5582 -0.7827 15 7 2.0263 -3.5585 0.6854 16 6 2.2128 -4.6294 1.4820 17 8 2.1216 -4.5126 2.6900 18 6 2.5203 -5.9379 0.8924 19 7 1.6471 -6.7720 0.2669 20 6 2.2873 -7.8326 -0.1224 21 8 3.5781 -7.7427 0.2322 22 6 3.7600 -6.5683 0.8703 23 6 5.0151 -6.0578 1.4300 24 6 6.2347 -6.6576 1.3096 25 6 7.2638 -5.9826 1.9246 26 6 6.9129 -4.8482 2.5420 27 16 5.1866 -4.5718 2.3553 28 6 1.7020 -2.1945 1.1413 29 1 -0.3633 0.0890 1.0238 30 1 -0.3632 0.8423 -0.5889 31 1 -0.3634 -0.9310 -0.4349 32 1 -0.0184 3.0622 1.4749 33 1 2.5042 -1.8554 -2.0872 34 1 0.8031 -1.9781 -1.5347 35 1 3.0978 -3.8807 -1.1001 36 1 1.3498 -4.2259 -1.1952 37 1 1.8455 -8.6651 -0.6498 38 1 6.3801 -7.5857 0.7767 39 1 8.2820 -6.3424 1.9101 40 1 7.5911 -4.1962 3.0724 41 1 0.6262 -2.0868 1.2804 42 1 2.2296 -1.9688 2.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972567762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:25 Heat of formation + Delta-G solvation = 43.299980 kcal Electronic energy + Delta-G solvation = -28061.815671 eV Core-core repulsion = 24135.933201 eV Total energy + Delta-G solvation = -3925.882470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.34999 -41.09396 -38.97524 -38.69170 -36.61078 -35.94100 -33.55283 -32.98601 -31.38894 -29.91714 -29.05436 -28.07248 -26.31500 -25.44592 -24.45905 -23.65376 -23.23714 -21.11710 -20.91462 -20.19132 -19.27525 -18.95987 -18.57899 -17.86955 -17.56335 -17.28034 -16.82586 -16.47743 -16.31721 -15.68120 -15.27172 -15.05361 -14.87496 -14.52978 -14.42747 -14.23902 -14.17743 -13.86513 -13.68267 -13.49509 -13.25489 -13.14166 -12.80549 -12.62885 -12.53064 -12.40611 -12.19881 -12.06348 -11.97562 -11.82467 -11.72403 -11.51053 -11.40290 -11.02515 -10.65433 -9.86299 -9.65174 -9.16962 -8.80302 -7.83084 -5.34476 -0.85171 0.21054 0.60776 0.85926 1.12042 1.36220 1.48156 1.49407 1.52887 1.60006 1.74902 1.91470 2.51226 3.01953 3.28498 3.34171 3.48192 3.56719 3.87148 3.93035 4.08762 4.12112 4.23270 4.24657 4.25672 4.37317 4.48971 4.57589 4.59797 4.77511 4.79666 4.94659 4.97626 5.01927 5.11845 5.16088 5.17699 5.26002 5.38818 5.39646 5.65261 5.71305 6.27968 6.31680 6.37579 6.79339 7.13262 7.82538 8.27703 9.19866 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003189 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.910236 B = 8778.076990 C = 9999.634942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.599 5.599 3 C -0.266 4.266 4 H 0.078 0.922 5 C -0.050 4.050 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.262 1.262 9 H -0.291 1.291 10 H -0.295 1.295 11 C 0.171 3.829 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.113 3.887 15 N -0.594 5.594 16 C 0.609 3.391 17 O -0.561 6.561 18 C -0.069 4.069 19 N -0.489 5.489 20 C 0.211 3.789 21 O -0.183 6.183 22 C 0.088 3.912 23 C -0.183 4.183 24 C -0.079 4.079 25 C -0.139 4.139 26 C -0.197 4.197 27 S 0.129 5.871 28 C 0.099 3.901 29 H 0.001 0.999 30 H 0.020 0.980 31 H 0.031 0.969 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.316 0.684 38 H 0.172 0.828 39 H 0.184 0.816 40 H 0.196 0.804 41 H 0.054 0.946 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.999 -23.244 -5.625 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.320 5.320 3 C -0.396 4.396 4 H 0.095 0.905 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.218 1.218 10 H -0.222 1.222 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.176 4.176 14 C -0.010 4.010 15 N -0.326 5.326 16 C 0.395 3.605 17 O -0.439 6.439 18 C -0.190 4.190 19 N -0.217 5.217 20 C -0.016 4.016 21 O -0.070 6.070 22 C 0.030 3.970 23 C -0.301 4.301 24 C -0.112 4.112 25 C -0.168 4.168 26 C -0.334 4.334 27 S 0.395 5.605 28 C -0.025 4.025 29 H 0.019 0.981 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.330 0.670 38 H 0.190 0.810 39 H 0.201 0.799 40 H 0.213 0.787 41 H 0.073 0.927 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.241 -21.817 -4.498 24.952 hybrid contribution 1.102 0.027 0.096 1.106 sum 12.343 -21.790 -4.402 25.427 Atomic orbital electron populations 1.20508 0.82672 0.96022 0.97528 1.44023 1.02017 1.00778 1.85153 1.19627 0.99141 0.86288 1.34505 0.90470 1.25853 0.98446 1.02078 0.98135 1.70253 1.20211 1.27727 1.40215 0.85152 0.78205 0.79820 0.76938 1.18644 1.21812 1.22245 1.21615 0.95910 0.84476 0.91840 0.90253 1.23074 1.03208 0.92108 0.99187 1.22118 1.02336 0.98567 0.77941 1.48351 1.67140 1.08308 1.08774 1.16553 0.76682 0.82142 0.85112 1.90832 1.52711 1.85381 1.15014 1.21549 0.91001 0.98026 1.08456 1.70673 1.33206 1.03821 1.13986 1.29357 0.75647 0.99189 0.97374 1.84477 1.32533 1.33264 1.56726 1.20333 0.92871 0.85268 0.98482 1.21885 0.93534 1.03027 1.11628 1.21104 0.89251 1.01465 0.99343 1.20396 1.02064 0.94963 0.99360 1.26529 0.97169 1.03196 1.06479 1.85662 1.05939 1.19265 1.49592 1.22849 0.99752 0.80297 0.99625 0.98053 0.96085 0.95045 0.94264 0.88379 0.90731 0.90332 0.90357 0.66991 0.81016 0.79862 0.78671 0.92725 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.74 7.55 127.77 0.96 9.71 16 2 N -0.60 -29.31 2.96 -694.58 -2.05 -31.37 16 3 C -0.27 -14.21 9.61 84.03 0.81 -13.41 16 4 H 0.08 3.95 7.85 -2.91 -0.02 3.92 16 5 C -0.05 -2.75 5.13 84.86 0.44 -2.32 16 6 N -0.94 -55.49 10.66 21.65 0.23 -55.26 16 7 Si 0.97 44.47 29.57 68.60 2.03 46.50 16 8 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 11 C 0.17 6.78 3.55 46.46 0.16 6.95 16 12 H 0.08 3.15 7.96 -2.39 -0.02 3.13 16 13 C -0.14 -4.20 6.49 31.78 0.21 -4.00 16 14 C 0.11 3.19 6.46 86.73 0.56 3.75 16 15 N -0.59 -21.01 3.32 -815.91 -2.71 -23.72 16 16 C 0.61 22.72 6.03 86.48 0.52 23.24 16 17 O -0.56 -24.76 16.62 -4.37 -0.07 -24.83 16 18 C -0.07 -2.12 6.09 40.94 0.25 -1.87 16 19 N -0.49 -12.71 11.33 -303.52 -3.44 -16.15 16 20 C 0.21 3.21 13.15 130.53 1.72 4.93 16 21 O -0.18 -3.45 10.75 -6.98 -0.08 -3.52 16 22 C 0.09 2.28 7.27 24.66 0.18 2.46 16 23 C -0.18 -4.49 6.44 24.04 0.15 -4.34 16 24 C -0.08 -1.35 10.17 21.69 0.22 -1.13 16 25 C -0.14 -1.98 10.14 21.11 0.21 -1.76 16 26 C -0.20 -3.47 11.22 66.82 0.75 -2.72 16 27 S 0.13 3.49 20.81 -56.49 -1.18 2.32 16 28 C 0.10 4.05 6.46 86.93 0.56 4.61 16 29 H 0.00 0.06 7.34 -2.39 -0.02 0.05 16 30 H 0.02 1.10 7.33 -2.38 -0.02 1.08 16 31 H 0.03 1.33 6.37 -2.39 -0.02 1.31 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.39 6.47 -2.39 -0.02 2.37 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.32 0.35 8.06 -2.91 -0.02 0.32 16 38 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.05 2.41 6.96 -2.38 -0.02 2.39 16 42 H 0.05 2.41 8.03 -2.39 -0.02 2.39 16 Total: -1.00 -76.93 366.40 1.49 -75.44 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.05 Total: 6.49 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.71 Total: 24.11 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -7.98 Total: -126.51 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.15 Total: -28.35 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.18 Total: 2.32 kcal Total: -76.93 1.49 -75.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972567762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.740 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds