Wall clock time and date at job start Wed Apr 1 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99859 * 2 1 4 4 O 1.21631 * 119.99825 * 174.40334 * 3 2 1 5 5 C 1.47290 * 120.00119 * 354.68440 * 3 2 1 6 6 C 1.35167 * 122.42074 * 173.28720 * 5 3 2 7 7 S 1.70996 * 109.16593 * 179.97438 * 6 5 3 8 8 C 1.75993 * 90.59574 * 359.97438 * 7 6 5 9 9 C 1.47143 * 125.33483 * 180.02562 * 8 7 6 10 10 C 1.36239 * 125.95582 * 359.97438 * 9 8 7 11 11 C 1.40766 * 106.72699 * 179.97438 * 10 9 8 12 12 C 1.34841 * 107.06709 * 359.97438 * 11 10 9 13 13 O 1.34239 * 108.72058 * 359.75400 * 12 11 10 14 14 N 1.30127 * 109.34227 * 359.75696 * 8 7 6 15 15 C 1.46498 * 120.00414 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61470 * 39.13517 * 15 2 1 17 17 C 1.53956 * 87.02256 * 220.05576 * 16 15 2 18 18 N 1.46490 * 113.74687 * 139.94326 * 17 16 15 19 19 C 1.36939 * 119.99946 * 107.39858 * 18 17 16 20 20 H 1.07997 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00390 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47283 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47153 * 119.99773 * 23 21 19 26 26 H 1.48498 * 109.47175 * 239.99710 * 23 21 19 27 27 C 1.53784 * 87.11114 * 25.36116 * 17 16 15 28 28 H 1.09003 * 109.47174 * 85.21848 * 1 2 3 29 29 H 1.08996 * 109.47374 * 205.21426 * 1 2 3 30 30 H 1.08996 * 109.47460 * 325.21650 * 1 2 3 31 31 H 1.08005 * 125.41329 * 359.97174 * 6 5 3 32 32 H 1.08001 * 126.63609 * 359.93628 * 10 9 8 33 33 H 1.07998 * 126.46414 * 180.02562 * 11 10 9 34 34 H 1.07999 * 125.63210 * 180.02562 * 12 11 10 35 35 H 1.08999 * 112.85589 * 170.33296 * 15 2 1 36 36 H 1.09001 * 113.61284 * 334.57309 * 16 15 2 37 37 H 1.08996 * 113.61414 * 105.47146 * 16 15 2 38 38 H 1.09001 * 113.53157 * 270.81172 * 17 16 15 39 39 H 0.96998 * 120.00036 * 287.40129 * 18 17 16 40 40 H 0.96996 * 120.00035 * 180.02562 * 22 21 19 41 41 H 1.09001 * 113.61393 * 220.09852 * 27 17 16 42 42 H 1.08994 * 113.61606 * 89.18910 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3508 1.1698 0.1027 5 6 1.4071 2.4401 -0.1182 6 6 2.0157 3.6403 0.0090 7 16 0.8561 4.8814 -0.1889 8 6 -0.4097 3.6843 -0.4379 9 6 -1.8267 3.9852 -0.6960 10 6 -2.3778 5.2282 -0.7817 11 6 -3.7498 5.0463 -1.0383 12 6 -3.9686 3.7170 -1.0970 13 8 -2.8046 3.0795 -0.8956 14 7 0.1047 2.4913 -0.3637 15 6 2.1975 -1.2687 -0.0006 16 6 1.5591 -2.3483 -0.8904 17 6 1.9074 -3.3558 0.2204 18 7 0.8614 -4.3526 0.4619 19 6 1.0451 -5.6489 0.0605 20 1 1.9610 -5.9362 -0.4344 21 6 0.0537 -6.5933 0.2888 22 7 -1.0627 -6.2430 0.8915 23 14 0.3041 -8.3614 -0.2593 24 1 1.6336 -8.4953 -0.9071 25 1 0.2365 -9.2599 0.9211 26 1 -0.7586 -8.7348 -1.2271 27 6 1.8673 -2.1711 1.2001 28 1 -0.3634 0.0857 -1.0241 29 1 -0.3634 -0.9297 0.4378 30 1 -0.3634 0.8440 0.5862 31 1 3.0671 3.7913 0.2045 32 1 -1.8619 6.1708 -0.6731 33 1 -4.4878 5.8245 -1.1652 34 1 -4.9219 3.2438 -1.2805 35 1 3.2667 -1.1401 -0.1692 36 1 0.4875 -2.2146 -1.0383 37 1 2.0977 -2.5207 -1.8222 38 1 2.8973 -3.7989 0.1113 39 1 0.0386 -4.0944 0.9060 40 1 -1.7553 -6.9030 1.0514 41 1 2.6546 -2.2007 1.9534 42 1 0.8802 -1.9889 1.6248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999312225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:22 Heat of formation + Delta-G solvation = 84.031927 kcal Electronic energy + Delta-G solvation = -27001.393133 eV Core-core repulsion = 23077.276932 eV Total energy + Delta-G solvation = -3924.116200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94364 -40.83754 -39.19983 -37.73460 -34.72258 -33.58257 -33.04015 -32.10463 -29.96646 -29.34244 -26.82400 -26.44820 -25.09030 -24.55046 -23.48144 -22.32840 -21.69961 -20.54988 -19.41373 -18.88341 -18.56099 -17.89569 -17.06829 -16.58377 -16.51126 -16.25060 -15.71226 -15.68222 -14.69520 -14.45356 -14.22107 -14.06140 -13.83330 -13.40052 -13.37013 -13.04935 -12.95653 -12.85998 -12.75721 -12.51120 -12.01784 -11.98830 -11.72375 -11.22167 -10.89663 -10.60782 -10.58150 -10.47586 -10.28596 -10.26482 -10.12607 -9.97392 -9.85305 -9.69946 -9.53540 -8.88540 -8.54591 -8.30397 -6.96849 -5.78556 -3.07283 -0.21852 0.51586 1.09123 1.12125 1.86410 2.32720 2.61759 3.08816 3.22799 3.43136 3.49033 3.50895 3.51434 4.33121 4.46518 4.59465 4.60177 4.75481 4.84297 5.16814 5.17456 5.26947 5.27761 5.38805 5.43770 5.48604 5.49307 5.54192 5.86908 5.90864 5.93479 5.99698 6.16248 6.19849 6.34428 6.38675 6.48819 6.57718 6.60243 6.82622 7.00192 7.11130 7.53172 7.70842 8.14664 8.39848 9.51248 10.08258 10.43032 11.43906 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002395 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.539099 B =11687.064075 C =13487.147400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.577 5.577 3 C 0.585 3.415 4 O -0.541 6.541 5 C 0.022 3.978 6 C -0.216 4.216 7 S 0.219 5.781 8 C 0.100 3.900 9 C 0.050 3.950 10 C -0.169 4.169 11 C -0.215 4.215 12 C -0.011 4.011 13 O -0.148 6.148 14 N -0.413 5.413 15 C 0.115 3.885 16 C -0.174 4.174 17 C 0.170 3.830 18 N -0.709 5.709 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.196 0.804 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.211 0.789 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 29.577 -2.949 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.307 5.307 3 C 0.370 3.630 4 O -0.419 6.419 5 C -0.115 4.115 6 C -0.358 4.358 7 S 0.477 5.523 8 C -0.174 4.174 9 C -0.004 4.004 10 C -0.192 4.192 11 C -0.234 4.234 12 C -0.082 4.082 13 O -0.042 6.042 14 N -0.129 5.129 15 C 0.012 3.988 16 C -0.216 4.216 17 C 0.057 3.943 18 N -0.347 5.347 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.202 4.202 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.213 0.787 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.228 0.772 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.147 29.622 -2.988 29.849 hybrid contribution -0.020 -1.496 -0.143 1.503 sum -2.166 28.125 -3.131 28.382 Atomic orbital electron populations 1.22013 0.78103 1.02925 1.02638 1.47727 1.07838 1.05182 1.69903 1.17168 0.86216 0.82254 0.77393 1.90791 1.12958 1.86759 1.51426 1.20268 0.88778 0.95476 1.06946 1.26670 1.07018 0.95575 1.06526 1.83687 0.96739 1.08778 1.63083 1.24483 0.94929 0.91436 1.06562 1.18825 0.85330 0.87228 1.09016 1.21808 0.95056 0.96619 1.05715 1.21752 0.96382 0.96733 1.08559 1.24422 0.88595 0.92298 1.02900 1.84221 1.15837 1.36065 1.68099 1.67681 1.09826 1.22025 1.13338 1.22703 0.97150 0.80032 0.98947 1.24366 1.01287 0.96521 0.99395 1.21367 0.93749 0.87233 0.91921 1.42361 1.17203 1.05589 1.69566 1.19361 1.01229 0.85507 1.31262 0.90939 1.24767 0.96538 0.98308 1.01320 1.69668 1.07309 1.33562 1.47494 0.86112 0.77281 0.84997 0.77770 1.20498 1.21862 1.21862 1.23923 1.01918 0.97050 0.97266 0.92280 0.90865 0.89830 0.78659 0.82735 0.82566 0.77213 0.86794 0.89745 0.92092 0.90225 0.78085 0.93517 0.91650 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 7.88 59.84 0.47 1.73 16 2 N -0.58 -9.19 3.08 -174.32 -0.54 -9.73 16 3 C 0.59 9.38 7.64 -12.58 -0.10 9.28 16 4 O -0.54 -9.77 16.17 5.25 0.08 -9.68 16 5 C 0.02 0.29 6.38 -84.93 -0.54 -0.25 16 6 C -0.22 -2.20 10.56 29.64 0.31 -1.88 16 7 S 0.22 1.62 22.93 -107.50 -2.46 -0.85 16 8 C 0.10 1.06 7.46 -14.66 -0.11 0.95 16 9 C 0.05 0.49 7.24 -36.69 -0.27 0.22 16 10 C -0.17 -1.22 10.63 -39.35 -0.42 -1.64 16 11 C -0.22 -1.33 10.88 -39.83 -0.43 -1.76 16 12 C -0.01 -0.08 12.08 29.53 0.36 0.28 16 13 O -0.15 -1.56 10.67 4.58 0.05 -1.51 16 14 N -0.41 -5.34 6.90 -8.28 -0.06 -5.40 16 15 C 0.11 1.91 4.19 -67.11 -0.28 1.63 16 16 C -0.17 -3.13 7.32 -25.82 -0.19 -3.32 16 17 C 0.17 3.43 4.48 -67.03 -0.30 3.13 16 18 N -0.71 -17.81 5.41 -52.55 -0.28 -18.10 16 19 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.16 -2.84 7.35 -25.91 -0.19 -3.03 16 28 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.07 1.11 6.15 -51.93 -0.32 0.79 16 30 H 0.08 1.19 5.80 -51.93 -0.30 0.89 16 31 H 0.20 1.72 8.00 -52.48 -0.42 1.30 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.16 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.11 1.93 7.25 -51.93 -0.38 1.55 16 36 H 0.08 1.59 6.70 -51.93 -0.35 1.24 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 39 H 0.39 10.22 7.92 -40.82 -0.32 9.90 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.47 6.86 -51.93 -0.36 1.12 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -33.79 370.09 -8.81 -42.60 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.94 Total: 9.05 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.93 Total: -2.02 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.15 Total: -60.59 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.13 Total: -11.19 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.46 Total: -0.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.79 -8.81 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999312225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.627 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds