Wall clock time and date at job start Wed Apr 1 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99859 * 2 1 4 4 O 1.21631 * 119.99825 * 174.40334 * 3 2 1 5 5 C 1.47290 * 120.00119 * 354.68440 * 3 2 1 6 6 C 1.35167 * 122.42074 * 173.28720 * 5 3 2 7 7 S 1.70996 * 109.16593 * 179.97438 * 6 5 3 8 8 C 1.75993 * 90.59574 * 359.97438 * 7 6 5 9 9 C 1.47143 * 125.33483 * 180.02562 * 8 7 6 10 10 C 1.36239 * 125.95582 * 359.97438 * 9 8 7 11 11 C 1.40766 * 106.72699 * 179.97438 * 10 9 8 12 12 C 1.34841 * 107.06709 * 359.97438 * 11 10 9 13 13 O 1.34239 * 108.72058 * 359.75400 * 12 11 10 14 14 N 1.30127 * 109.34227 * 359.75696 * 8 7 6 15 15 C 1.46498 * 120.00414 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61470 * 39.13517 * 15 2 1 17 17 C 1.53956 * 87.02256 * 220.05576 * 16 15 2 18 18 N 1.46490 * 113.74687 * 139.94326 * 17 16 15 19 19 C 1.36939 * 119.99946 * 107.39858 * 18 17 16 20 20 H 1.07997 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00390 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47283 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47153 * 119.99773 * 23 21 19 26 26 H 1.48498 * 109.47175 * 239.99710 * 23 21 19 27 27 C 1.53784 * 87.11114 * 25.36116 * 17 16 15 28 28 H 1.09003 * 109.47174 * 85.21848 * 1 2 3 29 29 H 1.08996 * 109.47374 * 205.21426 * 1 2 3 30 30 H 1.08996 * 109.47460 * 325.21650 * 1 2 3 31 31 H 1.08005 * 125.41329 * 359.97174 * 6 5 3 32 32 H 1.08001 * 126.63609 * 359.93628 * 10 9 8 33 33 H 1.07998 * 126.46414 * 180.02562 * 11 10 9 34 34 H 1.07999 * 125.63210 * 180.02562 * 12 11 10 35 35 H 1.08999 * 112.85589 * 170.33296 * 15 2 1 36 36 H 1.09001 * 113.61284 * 334.57309 * 16 15 2 37 37 H 1.08996 * 113.61414 * 105.47146 * 16 15 2 38 38 H 1.09001 * 113.53157 * 270.81172 * 17 16 15 39 39 H 0.96998 * 120.00036 * 287.40129 * 18 17 16 40 40 H 0.96996 * 120.00035 * 180.02562 * 22 21 19 41 41 H 1.09001 * 113.61393 * 220.09852 * 27 17 16 42 42 H 1.08994 * 113.61606 * 89.18910 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3508 1.1698 0.1027 5 6 1.4071 2.4401 -0.1182 6 6 2.0157 3.6403 0.0090 7 16 0.8561 4.8814 -0.1889 8 6 -0.4097 3.6843 -0.4379 9 6 -1.8267 3.9852 -0.6960 10 6 -2.3778 5.2282 -0.7817 11 6 -3.7498 5.0463 -1.0383 12 6 -3.9686 3.7170 -1.0970 13 8 -2.8046 3.0795 -0.8956 14 7 0.1047 2.4913 -0.3637 15 6 2.1975 -1.2687 -0.0006 16 6 1.5591 -2.3483 -0.8904 17 6 1.9074 -3.3558 0.2204 18 7 0.8614 -4.3526 0.4619 19 6 1.0451 -5.6489 0.0605 20 1 1.9610 -5.9362 -0.4344 21 6 0.0537 -6.5933 0.2888 22 7 -1.0627 -6.2430 0.8915 23 14 0.3041 -8.3614 -0.2593 24 1 1.6336 -8.4953 -0.9071 25 1 0.2365 -9.2599 0.9211 26 1 -0.7586 -8.7348 -1.2271 27 6 1.8673 -2.1711 1.2001 28 1 -0.3634 0.0857 -1.0241 29 1 -0.3634 -0.9297 0.4378 30 1 -0.3634 0.8440 0.5862 31 1 3.0671 3.7913 0.2045 32 1 -1.8619 6.1708 -0.6731 33 1 -4.4878 5.8245 -1.1652 34 1 -4.9219 3.2438 -1.2805 35 1 3.2667 -1.1401 -0.1692 36 1 0.4875 -2.2146 -1.0383 37 1 2.0977 -2.5207 -1.8222 38 1 2.8973 -3.7989 0.1113 39 1 0.0386 -4.0944 0.9060 40 1 -1.7553 -6.9030 1.0514 41 1 2.6546 -2.2007 1.9534 42 1 0.8802 -1.9889 1.6248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999312225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:22 Heat of formation + Delta-G solvation = 62.298990 kcal Electronic energy + Delta-G solvation = -27002.335544 eV Core-core repulsion = 23077.276932 eV Total energy + Delta-G solvation = -3925.058611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.51487 -41.90809 -40.39625 -39.05998 -36.26364 -34.86394 -34.15173 -32.82871 -31.93434 -30.02883 -28.10322 -27.48371 -26.59550 -26.11924 -24.76398 -23.03948 -22.82485 -21.34898 -20.44786 -20.24475 -19.56137 -19.05959 -18.65921 -17.70940 -17.31584 -17.24047 -16.77446 -16.66109 -16.23474 -16.06373 -15.43328 -15.24389 -14.92739 -14.69674 -14.36112 -14.15513 -13.96347 -13.84735 -13.55342 -13.47006 -13.43371 -13.26347 -13.14973 -12.96667 -12.82039 -12.23968 -12.14088 -12.02638 -11.74682 -11.50462 -11.30389 -11.23983 -10.90333 -10.88514 -10.77264 -10.39209 -9.71247 -9.08229 -9.00806 -7.95454 -5.24302 -0.93326 -0.15273 0.30117 0.33717 1.18531 1.47828 1.48135 1.58427 1.70841 1.91393 2.07779 2.18001 2.56311 2.73085 3.35810 3.47554 3.69478 3.75766 3.90408 3.92172 3.99897 4.07653 4.15611 4.16207 4.24287 4.32402 4.46590 4.68480 4.70730 4.75555 4.82062 4.84175 4.93505 4.96266 5.02459 5.08360 5.11601 5.39250 5.48324 5.50913 5.58761 5.99884 6.22293 6.26443 6.34034 6.93067 7.32681 8.06795 8.31267 9.27982 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002395 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.539099 B =11687.064075 C =13487.147400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.582 5.582 3 C 0.582 3.418 4 O -0.568 6.568 5 C -0.009 4.009 6 C -0.221 4.221 7 S 0.327 5.673 8 C 0.080 3.920 9 C 0.010 3.990 10 C -0.154 4.154 11 C -0.217 4.217 12 C -0.016 4.016 13 O -0.181 6.181 14 N -0.447 5.447 15 C 0.129 3.871 16 C -0.162 4.162 17 C 0.157 3.843 18 N -0.723 5.723 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.973 3.027 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.207 0.793 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.239 0.761 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 32.272 -3.516 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.311 5.311 3 C 0.369 3.631 4 O -0.449 6.449 5 C -0.145 4.145 6 C -0.364 4.364 7 S 0.586 5.414 8 C -0.193 4.193 9 C -0.043 4.043 10 C -0.177 4.177 11 C -0.236 4.236 12 C -0.086 4.086 13 O -0.077 6.077 14 N -0.163 5.163 15 C 0.025 3.975 16 C -0.204 4.204 17 C 0.046 3.954 18 N -0.360 5.360 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.189 4.189 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.224 0.776 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.255 0.745 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.122 32.372 -3.573 32.638 hybrid contribution -0.063 -2.088 0.006 2.089 sum -2.184 30.284 -3.567 30.571 Atomic orbital electron populations 1.21906 0.77499 1.02542 1.02393 1.47739 1.08139 1.05073 1.70176 1.17580 0.86109 0.83080 0.76334 1.90755 1.14042 1.87352 1.52723 1.19909 0.89411 0.94925 1.10280 1.26990 1.08449 0.96050 1.04916 1.83247 0.92988 1.05045 1.60154 1.24855 0.96182 0.92207 1.06081 1.19103 0.85255 0.88118 1.11850 1.22224 0.95573 0.96546 1.03345 1.22160 0.96528 0.97101 1.07770 1.25187 0.88626 0.93078 1.01732 1.84194 1.17054 1.37501 1.68971 1.67572 1.09784 1.23996 1.14962 1.22440 0.97152 0.80352 0.97531 1.24141 1.00883 0.96186 0.99174 1.21637 0.92688 0.87156 0.93883 1.42507 1.17899 1.05815 1.69771 1.19744 1.01078 0.86660 1.30030 0.90372 1.25572 0.96576 1.02303 1.02336 1.69819 1.08188 1.34571 1.49375 0.85079 0.77549 0.80127 0.77035 1.19018 1.22086 1.22102 1.23764 1.02006 0.95765 0.97390 0.92672 0.91875 0.89232 0.77570 0.80202 0.79723 0.74473 0.86584 0.90730 0.91438 0.89833 0.79356 0.94007 0.90686 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.03 7.88 127.77 1.01 4.03 16 2 N -0.58 -18.90 3.08 -823.66 -2.54 -21.44 16 3 C 0.58 18.90 7.64 86.62 0.66 19.56 16 4 O -0.57 -20.65 16.17 -4.13 -0.07 -20.72 16 5 C -0.01 -0.24 6.38 40.70 0.26 0.02 16 6 C -0.22 -4.19 10.56 67.11 0.71 -3.48 16 7 S 0.33 3.95 22.93 -56.49 -1.30 2.65 16 8 C 0.08 1.62 7.46 87.29 0.65 2.27 16 9 C 0.01 0.18 7.24 24.14 0.17 0.35 16 10 C -0.15 -1.82 10.63 22.42 0.24 -1.59 16 11 C -0.22 -2.09 10.88 22.11 0.24 -1.85 16 12 C -0.02 -0.20 12.08 67.04 0.81 0.61 16 13 O -0.18 -3.78 10.67 -6.54 -0.07 -3.85 16 14 N -0.45 -11.61 6.90 -180.10 -1.24 -12.86 16 15 C 0.13 4.33 4.19 45.52 0.19 4.52 16 16 C -0.16 -5.91 7.32 31.18 0.23 -5.68 16 17 C 0.16 6.38 4.48 45.58 0.20 6.59 16 18 N -0.72 -36.98 5.41 -320.17 -1.73 -38.72 16 19 C -0.24 -13.63 9.97 84.03 0.84 -12.79 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 22 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 23 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 C -0.15 -5.29 7.35 31.12 0.23 -5.06 16 28 H 0.05 1.70 8.07 -2.39 -0.02 1.69 16 29 H 0.06 2.02 6.15 -2.39 -0.01 2.00 16 30 H 0.09 2.66 5.80 -2.39 -0.01 2.64 16 31 H 0.21 3.30 8.00 -2.91 -0.02 3.27 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.12 3.90 7.25 -2.39 -0.02 3.89 16 36 H 0.07 2.88 6.70 -2.39 -0.02 2.87 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 39 H 0.37 20.51 7.92 -92.71 -0.73 19.78 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 42 H 0.08 2.82 6.86 -2.39 -0.02 2.81 16 Total: -1.00 -74.63 370.09 2.61 -72.02 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.34 Total: 30.12 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.91 Total: 3.59 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.23 Total: -132.41 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.14 Total: -24.57 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.30 Total: 2.65 kcal Total: -74.63 2.61 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999312225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.318 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds