Wall clock time and date at job start Wed Apr 1 2020 04:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 120.00178 * 2 1 4 4 O 1.21718 * 120.00010 * 180.34433 * 3 2 1 5 5 C 1.46436 * 119.99782 * 0.34995 * 3 2 1 6 6 C 1.36855 * 126.11159 * 171.61821 * 5 3 2 7 7 N 1.30669 * 114.04886 * 179.97438 * 6 5 3 8 8 C 1.30429 * 117.27148 * 0.02562 * 7 6 5 9 9 C 1.47630 * 124.75609 * 179.97438 * 8 7 6 10 10 C 1.46920 * 127.16438 * 0.28507 * 9 8 7 11 11 C 1.34262 * 106.00130 * 180.09697 * 10 9 8 12 12 O 1.34195 * 109.08543 * 359.66255 * 11 10 9 13 13 C 1.33905 * 110.83974 * 0.22554 * 12 11 10 14 14 S 1.70924 * 110.48926 * 0.26215 * 8 7 6 15 15 C 1.46495 * 120.00112 * 179.97438 * 2 1 3 16 16 C 1.53782 * 113.61135 * 39.13706 * 15 2 1 17 17 C 1.53952 * 87.02225 * 220.04576 * 16 15 2 18 18 N 1.46497 * 113.54089 * 270.81693 * 17 16 15 19 19 C 1.36936 * 119.99885 * 252.49272 * 18 17 16 20 20 H 1.08000 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00473 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99406 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47277 * 90.00428 * 23 21 19 25 25 H 1.48506 * 109.46977 * 210.00058 * 23 21 19 26 26 H 1.48503 * 109.47331 * 329.99801 * 23 21 19 27 27 C 1.53779 * 113.61515 * 301.53126 * 15 2 1 28 28 H 1.09000 * 109.47026 * 83.51159 * 1 2 3 29 29 H 1.08997 * 109.47113 * 203.51247 * 1 2 3 30 30 H 1.08997 * 109.46731 * 323.51593 * 1 2 3 31 31 H 1.07998 * 122.97769 * 0.02562 * 6 5 3 32 32 H 1.08003 * 127.00169 * 0.03029 * 10 9 8 33 33 H 1.07997 * 125.45582 * 179.97438 * 11 10 9 34 34 H 1.08005 * 125.80067 * 180.02562 * 13 12 11 35 35 H 1.09002 * 112.85180 * 170.33394 * 15 2 1 36 36 H 1.08992 * 113.61704 * 334.56913 * 16 15 2 37 37 H 1.09004 * 113.61202 * 105.46913 * 16 15 2 38 38 H 1.09001 * 113.74477 * 139.93671 * 17 16 15 39 39 H 0.96996 * 120.00400 * 72.48670 * 18 17 16 40 40 H 0.97004 * 119.99679 * 180.02562 * 22 21 19 41 41 H 1.08993 * 113.61415 * 254.52748 * 27 15 2 42 42 H 1.09003 * 113.61613 * 25.43248 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3561 1.1672 -0.0063 5 6 1.4068 2.4354 0.0077 6 6 1.9516 3.6803 0.1698 7 7 1.0786 4.6520 0.1371 8 6 -0.1718 4.3263 -0.0407 9 6 -1.2910 5.2870 -0.1039 10 6 -1.2128 6.7495 0.0119 11 6 -2.4732 7.1977 -0.1031 12 8 -3.2958 6.1529 -0.2832 13 6 -2.6107 5.0024 -0.2869 14 16 -0.3340 2.6307 -0.1824 15 6 2.1975 -1.2687 0.0006 16 6 1.5590 -2.3490 -0.8883 17 6 1.9074 -3.3556 0.2232 18 7 3.2378 -3.9513 0.0771 19 6 3.3639 -5.2576 -0.3137 20 1 2.4825 -5.8488 -0.5139 21 6 4.6245 -5.8220 -0.4527 22 7 5.6985 -5.1016 -0.2082 23 14 4.7964 -7.6041 -0.9851 24 1 4.8751 -7.6728 -2.4664 25 1 6.0326 -8.1795 -0.3966 26 1 3.6185 -8.3770 -0.5155 27 6 1.8674 -2.1701 1.2019 28 1 -0.3633 0.1161 -1.0211 29 1 -0.3633 -0.9423 0.4100 30 1 -0.3633 0.8263 0.6110 31 1 3.0095 3.8451 0.3114 32 1 -0.3229 7.3432 0.1605 33 1 -2.7758 8.2337 -0.0627 34 1 -3.0325 4.0163 -0.4140 35 1 3.2667 -1.1402 -0.1681 36 1 0.4875 -2.2155 -1.0363 37 1 2.0976 -2.5222 -1.8200 38 1 1.1290 -4.0971 0.4036 39 1 4.0294 -3.4204 0.2572 40 1 6.5795 -5.4958 -0.3057 41 1 2.6545 -2.1991 1.9553 42 1 0.8802 -1.9876 1.6266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999511896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:17 Heat of formation + Delta-G solvation = 77.701117 kcal Electronic energy + Delta-G solvation = -26567.975951 eV Core-core repulsion = 22643.585226 eV Total energy + Delta-G solvation = -3924.390725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.90032 -40.41086 -39.58302 -37.94519 -35.01882 -33.88603 -33.04906 -30.98259 -30.08826 -29.48558 -27.47069 -26.46385 -25.19326 -24.50073 -23.25221 -22.36964 -21.76506 -21.03310 -19.53398 -18.58140 -18.38876 -17.74659 -17.34695 -16.54685 -16.51685 -16.37584 -15.79342 -15.54337 -14.97211 -14.88828 -14.46978 -14.14753 -13.98192 -13.64570 -13.34240 -13.32052 -13.17712 -12.95222 -12.77279 -12.56533 -12.11596 -12.04255 -11.78442 -11.55585 -10.90082 -10.80179 -10.77250 -10.34830 -10.19260 -10.14620 -9.88994 -9.72480 -9.66209 -9.62796 -9.51246 -8.94096 -8.76861 -8.43889 -7.04305 -5.81326 -3.12049 -0.25257 0.83711 1.25112 1.27499 1.83493 2.49608 2.61450 2.89877 3.11767 3.41408 3.46191 3.48448 3.62059 4.16363 4.37117 4.53728 4.54454 4.66929 4.74044 4.97280 4.97596 5.06669 5.11678 5.26230 5.28094 5.29203 5.41761 5.43615 5.47385 5.81434 5.82479 5.87173 5.93521 6.00450 6.10846 6.33524 6.48210 6.52364 6.64636 6.69598 6.94338 7.29205 7.40773 7.66605 8.06199 8.36423 9.47296 10.03159 10.37061 11.40579 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.001913 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.549293 B =14634.316722 C =15223.752305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.595 5.595 3 C 0.589 3.411 4 O -0.521 6.521 5 C -0.297 4.297 6 C 0.128 3.872 7 N -0.476 5.476 8 C 0.089 3.911 9 C -0.132 4.132 10 C -0.171 4.171 11 C -0.038 4.038 12 O -0.172 6.172 13 C 0.007 3.993 14 S 0.210 5.790 15 C 0.126 3.874 16 C -0.182 4.182 17 C 0.174 3.826 18 N -0.705 5.705 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.169 4.169 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.209 0.791 34 H 0.210 0.790 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.202 23.167 0.892 31.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.327 5.327 3 C 0.376 3.624 4 O -0.398 6.398 5 C -0.421 4.421 6 C -0.031 4.031 7 N -0.190 5.190 8 C -0.180 4.180 9 C -0.137 4.137 10 C -0.192 4.192 11 C -0.104 4.104 12 O -0.067 6.067 13 C -0.066 4.066 14 S 0.471 5.529 15 C 0.024 3.976 16 C -0.225 4.225 17 C 0.060 3.940 18 N -0.343 5.343 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.209 4.209 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.208 0.792 32 H 0.177 0.823 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.565 22.852 0.717 31.429 hybrid contribution 1.565 -0.416 -0.125 1.624 sum -20.000 22.436 0.592 30.062 Atomic orbital electron populations 1.21967 0.80755 1.03190 1.02234 1.47812 1.06325 1.06268 1.72271 1.16766 0.86733 0.81805 0.77101 1.90881 1.12326 1.86498 1.50142 1.26129 0.95956 0.99861 1.20197 1.22424 1.00881 0.84926 0.94883 1.66489 0.99786 1.35765 1.17009 1.24922 0.93585 0.98042 1.01456 1.19259 0.90495 0.92766 1.11160 1.22868 0.98381 0.92387 1.05607 1.23993 0.88558 0.92058 1.05766 1.83879 1.38269 1.14244 1.70323 1.24173 0.89748 0.89830 1.02877 1.84130 1.04645 0.99538 1.64548 1.22885 0.97903 0.78736 0.98046 1.24381 0.99482 0.97625 1.00973 1.20929 0.90014 0.91255 0.91783 1.42216 1.00961 1.11095 1.80056 1.19257 0.92368 0.87661 1.38566 0.90905 1.24798 0.95430 0.98376 1.02109 1.69674 0.97226 1.35895 1.54781 0.86161 0.77096 0.84501 0.78207 1.21651 1.21725 1.20687 1.23992 1.01496 0.97606 0.97805 0.91489 0.88310 0.91445 0.79242 0.82272 0.77397 0.77312 0.85978 0.90963 0.90703 0.91228 0.77893 0.93318 0.90833 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 7.67 59.85 0.46 1.06 16 2 N -0.60 -8.25 3.08 -174.63 -0.54 -8.79 16 3 C 0.59 9.16 7.64 -12.96 -0.10 9.06 16 4 O -0.52 -10.11 16.35 5.17 0.08 -10.02 16 5 C -0.30 -3.76 6.28 -36.78 -0.23 -3.99 16 6 C 0.13 1.62 11.16 -18.55 -0.21 1.42 16 7 N -0.48 -5.91 10.52 -12.04 -0.13 -6.04 16 8 C 0.09 0.93 7.25 -14.32 -0.10 0.83 16 9 C -0.13 -1.16 6.32 -103.27 -0.65 -1.81 16 10 C -0.17 -1.32 11.14 -37.47 -0.42 -1.74 16 11 C -0.04 -0.21 12.04 29.33 0.35 0.15 16 12 O -0.17 -1.13 10.54 7.06 0.07 -1.06 16 13 C 0.01 0.04 11.83 30.01 0.36 0.40 16 14 S 0.21 1.83 17.82 -107.50 -1.92 -0.08 16 15 C 0.13 2.07 4.09 -67.12 -0.27 1.80 16 16 C -0.18 -2.97 7.30 -25.83 -0.19 -3.16 16 17 C 0.17 3.26 4.57 -67.02 -0.31 2.96 16 18 N -0.70 -17.32 5.31 -52.55 -0.28 -17.60 16 19 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.17 -2.69 7.34 -25.91 -0.19 -2.88 16 28 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 29 H 0.10 0.81 6.09 -51.93 -0.32 0.49 16 30 H 0.07 0.54 4.59 -23.44 -0.11 0.44 16 31 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 34 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.12 2.43 7.21 -51.93 -0.37 2.06 16 36 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.39 10.27 7.90 -40.82 -0.32 9.95 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.01 6.91 -51.93 -0.36 0.65 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -34.74 367.58 -7.94 -42.69 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.73 Total: 8.75 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.75 Total: -3.21 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.22 Total: -59.71 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.16 Total: -11.08 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.92 Total: -0.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.74 -7.94 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999511896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.388 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds