Wall clock time and date at job start Wed Apr 1 2020 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 120.00178 * 2 1 4 4 O 1.21718 * 120.00010 * 180.34433 * 3 2 1 5 5 C 1.46436 * 119.99782 * 0.34995 * 3 2 1 6 6 C 1.36855 * 126.11159 * 171.61821 * 5 3 2 7 7 N 1.30669 * 114.04886 * 179.97438 * 6 5 3 8 8 C 1.30429 * 117.27148 * 0.02562 * 7 6 5 9 9 C 1.47630 * 124.75609 * 179.97438 * 8 7 6 10 10 C 1.46920 * 127.16438 * 0.28507 * 9 8 7 11 11 C 1.34262 * 106.00130 * 180.09697 * 10 9 8 12 12 O 1.34195 * 109.08543 * 359.66255 * 11 10 9 13 13 C 1.33905 * 110.83974 * 0.22554 * 12 11 10 14 14 S 1.70924 * 110.48926 * 0.26215 * 8 7 6 15 15 C 1.46495 * 120.00112 * 179.97438 * 2 1 3 16 16 C 1.53782 * 113.61135 * 39.13706 * 15 2 1 17 17 C 1.53952 * 87.02225 * 220.04576 * 16 15 2 18 18 N 1.46497 * 113.54089 * 270.81693 * 17 16 15 19 19 C 1.36936 * 119.99885 * 252.49272 * 18 17 16 20 20 H 1.08000 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00473 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99406 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47277 * 90.00428 * 23 21 19 25 25 H 1.48506 * 109.46977 * 210.00058 * 23 21 19 26 26 H 1.48503 * 109.47331 * 329.99801 * 23 21 19 27 27 C 1.53779 * 113.61515 * 301.53126 * 15 2 1 28 28 H 1.09000 * 109.47026 * 83.51159 * 1 2 3 29 29 H 1.08997 * 109.47113 * 203.51247 * 1 2 3 30 30 H 1.08997 * 109.46731 * 323.51593 * 1 2 3 31 31 H 1.07998 * 122.97769 * 0.02562 * 6 5 3 32 32 H 1.08003 * 127.00169 * 0.03029 * 10 9 8 33 33 H 1.07997 * 125.45582 * 179.97438 * 11 10 9 34 34 H 1.08005 * 125.80067 * 180.02562 * 13 12 11 35 35 H 1.09002 * 112.85180 * 170.33394 * 15 2 1 36 36 H 1.08992 * 113.61704 * 334.56913 * 16 15 2 37 37 H 1.09004 * 113.61202 * 105.46913 * 16 15 2 38 38 H 1.09001 * 113.74477 * 139.93671 * 17 16 15 39 39 H 0.96996 * 120.00400 * 72.48670 * 18 17 16 40 40 H 0.97004 * 119.99679 * 180.02562 * 22 21 19 41 41 H 1.08993 * 113.61415 * 254.52748 * 27 15 2 42 42 H 1.09003 * 113.61613 * 25.43248 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3561 1.1672 -0.0063 5 6 1.4068 2.4354 0.0077 6 6 1.9516 3.6803 0.1698 7 7 1.0786 4.6520 0.1371 8 6 -0.1718 4.3263 -0.0407 9 6 -1.2910 5.2870 -0.1039 10 6 -1.2128 6.7495 0.0119 11 6 -2.4732 7.1977 -0.1031 12 8 -3.2958 6.1529 -0.2832 13 6 -2.6107 5.0024 -0.2869 14 16 -0.3340 2.6307 -0.1824 15 6 2.1975 -1.2687 0.0006 16 6 1.5590 -2.3490 -0.8883 17 6 1.9074 -3.3556 0.2232 18 7 3.2378 -3.9513 0.0771 19 6 3.3639 -5.2576 -0.3137 20 1 2.4825 -5.8488 -0.5139 21 6 4.6245 -5.8220 -0.4527 22 7 5.6985 -5.1016 -0.2082 23 14 4.7964 -7.6041 -0.9851 24 1 4.8751 -7.6728 -2.4664 25 1 6.0326 -8.1795 -0.3966 26 1 3.6185 -8.3770 -0.5155 27 6 1.8674 -2.1701 1.2019 28 1 -0.3633 0.1161 -1.0211 29 1 -0.3633 -0.9423 0.4100 30 1 -0.3633 0.8263 0.6110 31 1 3.0095 3.8451 0.3114 32 1 -0.3229 7.3432 0.1605 33 1 -2.7758 8.2337 -0.0627 34 1 -3.0325 4.0163 -0.4140 35 1 3.2667 -1.1402 -0.1681 36 1 0.4875 -2.2155 -1.0363 37 1 2.0976 -2.5222 -1.8200 38 1 1.1290 -4.0971 0.4036 39 1 4.0294 -3.4204 0.2572 40 1 6.5795 -5.4958 -0.3057 41 1 2.6545 -2.1991 1.9553 42 1 0.8802 -1.9876 1.6266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999511896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:16 Heat of formation + Delta-G solvation = 53.074216 kcal Electronic energy + Delta-G solvation = -26569.043853 eV Core-core repulsion = 22643.585226 eV Total energy + Delta-G solvation = -3925.458627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.39397 -41.56052 -40.57379 -39.28177 -36.37481 -34.93889 -34.41764 -32.02390 -31.43003 -30.43968 -28.38867 -27.38580 -26.55915 -26.10777 -24.74300 -23.20430 -22.34378 -22.00842 -20.27081 -19.76762 -19.66162 -19.19515 -18.45016 -17.52873 -17.47640 -17.06567 -16.81531 -16.67040 -16.31450 -15.81731 -15.67010 -15.37109 -15.23108 -14.94702 -14.44213 -14.28993 -14.26639 -13.83195 -13.64077 -13.49060 -13.36921 -13.30771 -13.23613 -12.78444 -12.61249 -12.51212 -12.15909 -11.85320 -11.70696 -11.48859 -11.35436 -11.10383 -10.89503 -10.69722 -10.42125 -10.11069 -9.76635 -9.24038 -9.03830 -7.94834 -5.25128 -1.07687 0.03687 0.42366 0.69199 1.17331 1.48135 1.50255 1.58690 1.75210 1.81096 2.08272 2.12541 2.56010 2.90457 3.37007 3.39749 3.66603 3.75584 3.80565 3.85072 3.90701 3.98233 4.04520 4.18132 4.25988 4.33076 4.43975 4.56351 4.63008 4.76139 4.78051 4.81856 4.97101 5.01212 5.04667 5.07831 5.22398 5.28143 5.35240 5.51483 5.64040 6.03705 6.18421 6.27438 6.55752 6.91595 7.31479 8.07677 8.28792 9.28686 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.001913 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.549293 B =14634.316722 C =15223.752305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.591 5.591 3 C 0.584 3.416 4 O -0.579 6.579 5 C -0.335 4.335 6 C 0.125 3.875 7 N -0.508 5.508 8 C 0.084 3.916 9 C -0.173 4.173 10 C -0.202 4.202 11 C -0.021 4.021 12 O -0.174 6.174 13 C 0.031 3.969 14 S 0.308 5.692 15 C 0.128 3.872 16 C -0.160 4.160 17 C 0.154 3.846 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.086 0.914 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.977 3.023 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.263 1.263 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.181 0.819 32 H 0.152 0.848 33 H 0.245 0.755 34 H 0.246 0.754 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.049 0.951 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.566 23.340 0.638 35.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.321 5.321 3 C 0.372 3.628 4 O -0.460 6.460 5 C -0.459 4.459 6 C -0.036 4.036 7 N -0.223 5.223 8 C -0.184 4.184 9 C -0.178 4.178 10 C -0.224 4.224 11 C -0.086 4.086 12 O -0.069 6.069 13 C -0.042 4.042 14 S 0.571 5.429 15 C 0.025 3.975 16 C -0.201 4.201 17 C 0.044 3.956 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.104 0.896 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.227 1.227 26 H -0.187 1.187 27 C -0.189 4.189 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.100 0.900 31 H 0.198 0.802 32 H 0.170 0.830 33 H 0.261 0.739 34 H 0.262 0.738 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -27.065 23.033 0.460 35.542 hybrid contribution 3.003 -0.302 -0.040 3.018 sum -24.062 22.731 0.420 33.104 Atomic orbital electron populations 1.22388 0.77466 1.05175 1.04298 1.47793 1.08220 1.04686 1.71448 1.17178 0.86320 0.83060 0.76198 1.90842 1.14961 1.87439 1.52804 1.25870 0.99183 0.98227 1.22640 1.22395 1.00977 0.85460 0.94765 1.66531 1.00758 1.36018 1.18983 1.25400 0.93451 0.99986 0.99583 1.19488 0.91124 0.93156 1.14034 1.23002 0.99365 0.92438 1.07564 1.24608 0.87531 0.93146 1.03356 1.83926 1.38446 1.14596 1.69926 1.24799 0.88679 0.90960 0.99767 1.83450 0.99917 0.96950 1.62603 1.22459 0.96054 0.80356 0.98672 1.24195 1.01799 0.95688 0.98451 1.21269 0.87702 0.92591 0.94066 1.42444 1.02782 1.10524 1.80434 1.19739 0.92614 0.88739 1.36147 0.89573 1.25665 0.95373 1.02604 1.03642 1.69858 0.97408 1.37687 1.57429 0.85084 0.77062 0.79822 0.77441 1.21614 1.22672 1.18747 1.23878 1.03065 0.95413 0.96500 0.89155 0.85895 0.89993 0.80214 0.83018 0.73873 0.73840 0.90772 0.86218 0.93588 0.89670 0.79869 0.94162 0.93186 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 7.67 127.77 0.98 1.69 16 2 N -0.59 -15.66 3.08 -824.63 -2.54 -18.20 16 3 C 0.58 18.62 7.64 86.38 0.66 19.28 16 4 O -0.58 -24.33 16.35 -4.41 -0.07 -24.40 16 5 C -0.33 -8.42 6.28 24.08 0.15 -8.27 16 6 C 0.13 3.32 11.16 84.54 0.94 4.27 16 7 N -0.51 -12.80 10.52 -192.01 -2.02 -14.82 16 8 C 0.08 1.62 7.25 87.38 0.63 2.26 16 9 C -0.17 -2.67 6.32 -18.99 -0.12 -2.79 16 10 C -0.20 -2.87 11.14 23.64 0.26 -2.61 16 11 C -0.02 -0.17 12.04 66.91 0.81 0.64 16 12 O -0.17 -1.65 10.54 2.34 0.02 -1.62 16 13 C 0.03 0.27 11.83 67.35 0.80 1.07 16 14 S 0.31 4.43 17.82 -56.49 -1.01 3.43 16 15 C 0.13 4.20 4.09 45.52 0.19 4.39 16 16 C -0.16 -4.92 7.30 31.18 0.23 -4.69 16 17 C 0.15 5.61 4.57 45.58 0.21 5.82 16 18 N -0.72 -36.34 5.31 -320.16 -1.70 -38.04 16 19 C -0.24 -13.15 9.97 84.03 0.84 -12.32 16 20 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 22 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 23 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 C -0.15 -4.54 7.34 31.12 0.23 -4.32 16 28 H 0.09 0.95 7.82 -2.39 -0.02 0.93 16 29 H 0.12 1.24 6.09 -2.39 -0.01 1.22 16 30 H 0.08 0.94 4.59 -20.50 -0.09 0.84 16 31 H 0.18 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.25 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.25 0.05 8.06 -2.91 -0.02 0.03 16 35 H 0.07 3.20 7.21 -2.39 -0.02 3.18 16 36 H 0.12 2.55 6.66 -2.39 -0.02 2.53 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.84 8.10 -2.39 -0.02 2.82 16 39 H 0.37 20.74 7.90 -92.71 -0.73 20.01 16 40 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 2.64 6.91 -2.39 -0.02 2.63 16 Total: -1.00 -82.49 367.58 2.53 -79.96 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.27 Total: 26.18 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 7.27 Total: 0.20 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -5.98 Total: -131.91 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.01 Total: 3.43 kcal Total: -82.49 2.53 -79.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999511896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.039 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds