Wall clock time and date at job start Wed Apr 1 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34785 * 119.99923 * 2 1 4 4 O 1.21606 * 119.99681 * 186.37185 * 3 2 1 5 5 C 1.47299 * 120.00000 * 6.37649 * 3 2 1 6 6 C 1.34212 * 124.79123 * 187.53055 * 5 3 2 7 7 C 1.39564 * 115.53406 * 179.85507 * 6 5 3 8 8 C 1.47749 * 129.59918 * 180.16493 * 7 6 5 9 9 C 1.34065 * 119.55918 * 180.26714 * 8 7 6 10 10 N 1.36554 * 121.42208 * 0.02562 * 9 8 7 11 11 H 0.97004 * 119.16144 * 179.97438 * 10 9 8 12 12 C 1.34304 * 121.68218 * 359.95724 * 10 9 8 13 13 O 1.21953 * 119.69449 * 180.02562 * 12 10 9 14 14 C 1.39394 * 112.89846 * 0.42161 * 7 6 5 15 15 S 1.75565 * 124.78957 * 7.83049 * 5 3 2 16 16 C 1.46499 * 120.00245 * 180.02562 * 2 1 3 17 17 H 1.08997 * 110.91802 * 183.89953 * 16 2 1 18 18 C 1.55160 * 111.00495 * 59.99342 * 16 2 1 19 19 C 1.54320 * 102.94455 * 206.42258 * 18 16 2 20 20 N 1.47024 * 107.26801 * 22.19725 * 19 18 16 21 21 C 1.36935 * 125.64777 * 181.01897 * 20 19 18 22 22 H 1.08006 * 120.00220 * 174.85608 * 21 20 19 23 23 C 1.38816 * 120.00089 * 354.84877 * 21 20 19 24 24 N 1.31616 * 120.00028 * 213.35674 * 23 21 20 25 25 Si 1.86800 * 119.99719 * 33.63918 * 23 21 20 26 26 H 1.48496 * 109.47070 * 174.15782 * 25 23 21 27 27 H 1.48496 * 109.47141 * 294.15906 * 25 23 21 28 28 H 1.48502 * 109.47267 * 54.15500 * 25 23 21 29 29 C 1.47420 * 108.70578 * 1.28404 * 20 19 18 30 30 H 1.09000 * 109.47097 * 275.96176 * 1 2 3 31 31 H 1.08998 * 109.47629 * 35.95662 * 1 2 3 32 32 H 1.08998 * 109.47299 * 155.96023 * 1 2 3 33 33 H 1.07996 * 122.23436 * 0.03446 * 6 5 3 34 34 H 1.07995 * 120.22046 * 0.24260 * 8 7 6 35 35 H 1.07994 * 119.28737 * 180.02562 * 9 8 7 36 36 H 1.09007 * 110.71621 * 88.06251 * 18 16 2 37 37 H 1.08997 * 110.87305 * 324.86574 * 18 16 2 38 38 H 1.08990 * 109.88611 * 262.77724 * 19 18 16 39 39 H 1.09005 * 110.00980 * 141.68257 * 19 18 16 40 40 H 0.96996 * 120.00256 * 5.29369 * 24 23 21 41 41 H 1.09006 * 110.36709 * 94.47907 * 29 20 19 42 42 H 1.09004 * 110.37013 * 216.80515 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3493 1.1705 -0.1169 5 6 1.4092 2.4390 0.1417 6 6 1.9593 3.6562 0.0111 7 6 1.0870 4.7321 0.1821 8 6 1.3547 6.1831 0.1049 9 6 0.3549 7.0520 0.3114 10 7 -0.9115 6.6262 0.5935 11 1 -1.6102 7.2836 0.7375 12 6 -1.2146 5.3204 0.6762 13 8 -2.3581 4.9805 0.9298 14 6 -0.2168 4.3326 0.4714 15 16 -0.3013 2.5765 0.5126 16 6 2.1975 -1.2687 -0.0006 17 1 3.2718 -1.0978 0.0687 18 6 1.8483 -2.1120 -1.2553 19 6 2.1064 -3.5582 -0.7826 20 7 2.0265 -3.5583 0.6854 21 6 2.2163 -4.6464 1.4949 22 1 2.2181 -4.5272 2.5683 23 6 2.4060 -5.9027 0.9358 24 7 1.9544 -6.9732 1.5541 25 14 3.3094 -6.0746 -0.6902 26 1 3.5033 -7.5141 -0.9989 27 1 2.5109 -5.4401 -1.7695 28 1 4.6320 -5.4062 -0.5948 29 6 1.7021 -2.1945 1.1414 30 1 -0.3633 0.1067 1.0221 31 1 -0.3634 0.8318 -0.6034 32 1 -0.3634 -0.9385 -0.4186 33 1 3.0065 3.7939 -0.2142 34 1 2.3493 6.5413 -0.1161 35 1 0.5554 8.1116 0.2535 36 1 2.5042 -1.8553 -2.0872 37 1 0.8033 -1.9782 -1.5346 38 1 3.0980 -3.8805 -1.1000 39 1 1.3500 -4.2260 -1.1951 40 1 1.4228 -6.8798 2.3600 41 1 0.6263 -2.0868 1.2804 42 1 2.2298 -1.9687 2.0681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033221544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:38 Heat of formation + Delta-G solvation = 35.422360 kcal Electronic energy + Delta-G solvation = -27386.861189 eV Core-core repulsion = 23460.637120 eV Total energy + Delta-G solvation = -3926.224069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34357 -40.25886 -38.14805 -37.50999 -36.35727 -35.21841 -32.52891 -31.63362 -30.26507 -29.53208 -28.37933 -27.29278 -25.85122 -24.26553 -23.63152 -22.03536 -20.93418 -20.49466 -19.65903 -19.09165 -18.32824 -17.50674 -17.37971 -16.93019 -16.26680 -16.03484 -15.87050 -15.52393 -15.18790 -14.91024 -14.50267 -13.98782 -13.59341 -13.50562 -13.33516 -13.26779 -13.13326 -12.97228 -12.80582 -12.54779 -12.40032 -12.27690 -12.05025 -11.42049 -11.10661 -11.08826 -10.98770 -10.65045 -10.61629 -10.18993 -10.03747 -9.77364 -9.71015 -9.32754 -9.10305 -8.67883 -8.36467 -8.12095 -7.15468 -6.40066 -3.16628 -0.27895 0.92884 0.98311 1.47612 1.76842 2.62174 2.69899 2.84415 3.13949 3.43025 3.55658 3.72703 3.93856 4.13852 4.31040 4.52627 4.64639 4.66632 4.77380 4.90891 5.02519 5.09300 5.17279 5.26145 5.32840 5.33462 5.41923 5.50756 5.52495 5.62213 5.77933 5.79020 5.84211 6.13854 6.21588 6.28008 6.40251 6.48214 6.52498 6.62359 6.75245 7.18621 7.50809 7.65667 7.89821 8.30702 8.99025 9.55780 10.21441 11.07899 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.002360 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.634923 B =11862.254757 C =12388.205749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.593 5.593 3 C 0.584 3.416 4 O -0.520 6.520 5 C -0.216 4.216 6 C -0.066 4.066 7 C -0.007 4.007 8 C -0.173 4.173 9 C 0.104 3.896 10 N -0.620 5.620 11 H 0.418 0.582 12 C 0.570 3.430 13 O -0.541 6.541 14 C -0.300 4.300 15 S 0.276 5.724 16 C 0.122 3.878 17 H 0.113 0.887 18 C -0.140 4.140 19 C 0.122 3.878 20 N -0.606 5.606 21 C -0.342 4.342 22 H 0.081 0.919 23 C -0.009 4.009 24 N -0.902 5.902 25 Si 1.034 2.966 26 H -0.298 1.298 27 H -0.277 1.277 28 H -0.296 1.296 29 C 0.134 3.866 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.031 0.969 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 30.706 -5.398 31.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.324 5.324 3 C 0.371 3.629 4 O -0.397 6.397 5 C -0.338 4.338 6 C -0.099 4.099 7 C -0.023 4.023 8 C -0.199 4.199 9 C -0.019 4.019 10 N -0.257 5.257 11 H 0.256 0.744 12 C 0.364 3.636 13 O -0.421 6.421 14 C -0.420 4.420 15 S 0.548 5.452 16 C 0.019 3.981 17 H 0.131 0.869 18 C -0.179 4.179 19 C -0.003 4.003 20 N -0.334 5.334 21 C -0.468 4.468 22 H 0.098 0.902 23 C -0.211 4.211 24 N -0.541 5.541 25 Si 0.865 3.135 26 H -0.226 1.226 27 H -0.204 1.204 28 H -0.224 1.224 29 C 0.007 3.993 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.345 28.038 -6.036 29.174 hybrid contribution 0.422 2.647 0.912 2.831 sum -4.923 30.685 -5.124 31.497 Atomic orbital electron populations 1.22051 0.79954 1.04144 1.02960 1.47634 1.06790 1.05874 1.72137 1.17093 0.86627 0.81944 0.77278 1.90825 1.12907 1.86363 1.49639 1.24408 0.99246 0.98129 1.11972 1.20019 1.01666 0.89047 0.99173 1.19274 0.91081 0.94311 0.97614 1.21369 0.99904 0.89107 1.09482 1.21436 0.83411 1.00036 0.97056 1.43035 1.11261 1.08547 1.62808 0.74388 1.15809 0.87781 0.81744 0.78242 1.90995 1.20929 1.80317 1.49883 1.24904 0.97966 1.02195 1.16902 1.84835 1.02082 0.93494 1.64759 1.22685 0.97725 0.80583 0.97132 0.86863 1.22975 1.01683 0.96006 0.97192 1.21894 0.98766 0.93698 0.85978 1.44764 1.83299 1.04890 1.00466 1.19953 1.51697 0.84954 0.90199 0.90170 1.25598 1.00399 0.90707 1.04381 1.70922 1.32947 1.30376 1.19846 0.84456 0.77427 0.74502 0.77077 1.22559 1.20431 1.22358 1.21821 0.97757 0.84984 0.94768 0.91046 0.90624 0.87838 0.82349 0.83096 0.81593 0.90913 0.90959 0.95302 0.93459 0.92513 0.95114 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 7.39 59.85 0.44 1.03 16 2 N -0.59 -8.30 2.91 -172.66 -0.50 -8.80 16 3 C 0.58 8.48 7.64 -12.57 -0.10 8.39 16 4 O -0.52 -9.12 16.18 5.27 0.09 -9.04 16 5 C -0.22 -2.55 6.11 -37.32 -0.23 -2.78 16 6 C -0.07 -0.69 9.82 -40.51 -0.40 -1.08 16 7 C -0.01 -0.06 6.08 -105.09 -0.64 -0.70 16 8 C -0.17 -0.99 10.29 -37.16 -0.38 -1.37 16 9 C 0.10 0.41 11.11 -16.92 -0.19 0.22 16 10 N -0.62 -3.87 5.23 -14.85 -0.08 -3.95 16 11 H 0.42 1.54 8.87 -40.82 -0.36 1.17 16 12 C 0.57 6.15 7.71 -15.07 -0.12 6.03 16 13 O -0.54 -7.62 17.89 4.96 0.09 -7.54 16 14 C -0.30 -3.25 6.48 -37.75 -0.24 -3.49 16 15 S 0.28 2.92 17.99 -107.50 -1.93 0.99 16 16 C 0.12 2.06 3.44 -65.66 -0.23 1.83 16 17 H 0.11 2.10 7.05 -51.93 -0.37 1.73 16 18 C -0.14 -2.30 6.49 -24.90 -0.16 -2.46 16 19 C 0.12 2.60 4.58 -3.07 -0.01 2.59 16 20 N -0.61 -14.66 3.38 -169.93 -0.57 -15.23 16 21 C -0.34 -9.70 10.40 -15.06 -0.16 -9.85 16 22 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 23 C -0.01 -0.25 5.43 -17.43 -0.09 -0.35 16 24 N -0.90 -27.88 13.70 55.49 0.76 -27.12 16 25 Si 1.03 25.84 25.10 -169.99 -4.27 21.58 16 26 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.28 -6.25 5.07 56.52 0.29 -5.97 16 28 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 29 C 0.13 2.63 6.79 -2.41 -0.02 2.62 16 30 H 0.07 0.72 7.42 -51.93 -0.39 0.33 16 31 H 0.08 0.70 5.20 -28.01 -0.15 0.56 16 32 H 0.10 1.09 6.36 -51.93 -0.33 0.76 16 33 H 0.16 1.49 7.99 -52.49 -0.42 1.07 16 34 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 35 H 0.17 -0.08 8.06 -52.49 -0.42 -0.50 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 38 H 0.03 0.65 4.74 -51.93 -0.25 0.41 16 39 H 0.05 1.06 6.74 -51.93 -0.35 0.71 16 40 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 41 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -36.82 348.41 -8.37 -45.19 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.68 Total: -1.95 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.52 Total: 0.62 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.39 Total: -55.11 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.17 Total: -16.57 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.27 Total: 21.58 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.93 Total: 0.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.82 -8.37 -45.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033221544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.611 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds