Wall clock time and date at job start Wed Apr 1 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34785 * 119.99923 * 2 1 4 4 O 1.21606 * 119.99681 * 186.37185 * 3 2 1 5 5 C 1.47299 * 120.00000 * 6.37649 * 3 2 1 6 6 C 1.34212 * 124.79123 * 187.53055 * 5 3 2 7 7 C 1.39564 * 115.53406 * 179.85507 * 6 5 3 8 8 C 1.47749 * 129.59918 * 180.16493 * 7 6 5 9 9 C 1.34065 * 119.55918 * 180.26714 * 8 7 6 10 10 N 1.36554 * 121.42208 * 0.02562 * 9 8 7 11 11 H 0.97004 * 119.16144 * 179.97438 * 10 9 8 12 12 C 1.34304 * 121.68218 * 359.95724 * 10 9 8 13 13 O 1.21953 * 119.69449 * 180.02562 * 12 10 9 14 14 C 1.39394 * 112.89846 * 0.42161 * 7 6 5 15 15 S 1.75565 * 124.78957 * 7.83049 * 5 3 2 16 16 C 1.46499 * 120.00245 * 180.02562 * 2 1 3 17 17 H 1.08997 * 110.91802 * 183.89953 * 16 2 1 18 18 C 1.55160 * 111.00495 * 59.99342 * 16 2 1 19 19 C 1.54320 * 102.94455 * 206.42258 * 18 16 2 20 20 N 1.47024 * 107.26801 * 22.19725 * 19 18 16 21 21 C 1.36935 * 125.64777 * 181.01897 * 20 19 18 22 22 H 1.08006 * 120.00220 * 174.85608 * 21 20 19 23 23 C 1.38816 * 120.00089 * 354.84877 * 21 20 19 24 24 N 1.31616 * 120.00028 * 213.35674 * 23 21 20 25 25 Si 1.86800 * 119.99719 * 33.63918 * 23 21 20 26 26 H 1.48496 * 109.47070 * 174.15782 * 25 23 21 27 27 H 1.48496 * 109.47141 * 294.15906 * 25 23 21 28 28 H 1.48502 * 109.47267 * 54.15500 * 25 23 21 29 29 C 1.47420 * 108.70578 * 1.28404 * 20 19 18 30 30 H 1.09000 * 109.47097 * 275.96176 * 1 2 3 31 31 H 1.08998 * 109.47629 * 35.95662 * 1 2 3 32 32 H 1.08998 * 109.47299 * 155.96023 * 1 2 3 33 33 H 1.07996 * 122.23436 * 0.03446 * 6 5 3 34 34 H 1.07995 * 120.22046 * 0.24260 * 8 7 6 35 35 H 1.07994 * 119.28737 * 180.02562 * 9 8 7 36 36 H 1.09007 * 110.71621 * 88.06251 * 18 16 2 37 37 H 1.08997 * 110.87305 * 324.86574 * 18 16 2 38 38 H 1.08990 * 109.88611 * 262.77724 * 19 18 16 39 39 H 1.09005 * 110.00980 * 141.68257 * 19 18 16 40 40 H 0.96996 * 120.00256 * 5.29369 * 24 23 21 41 41 H 1.09006 * 110.36709 * 94.47907 * 29 20 19 42 42 H 1.09004 * 110.37013 * 216.80515 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3493 1.1705 -0.1169 5 6 1.4092 2.4390 0.1417 6 6 1.9593 3.6562 0.0111 7 6 1.0870 4.7321 0.1821 8 6 1.3547 6.1831 0.1049 9 6 0.3549 7.0520 0.3114 10 7 -0.9115 6.6262 0.5935 11 1 -1.6102 7.2836 0.7375 12 6 -1.2146 5.3204 0.6762 13 8 -2.3581 4.9805 0.9298 14 6 -0.2168 4.3326 0.4714 15 16 -0.3013 2.5765 0.5126 16 6 2.1975 -1.2687 -0.0006 17 1 3.2718 -1.0978 0.0687 18 6 1.8483 -2.1120 -1.2553 19 6 2.1064 -3.5582 -0.7826 20 7 2.0265 -3.5583 0.6854 21 6 2.2163 -4.6464 1.4949 22 1 2.2181 -4.5272 2.5683 23 6 2.4060 -5.9027 0.9358 24 7 1.9544 -6.9732 1.5541 25 14 3.3094 -6.0746 -0.6902 26 1 3.5033 -7.5141 -0.9989 27 1 2.5109 -5.4401 -1.7695 28 1 4.6320 -5.4062 -0.5948 29 6 1.7021 -2.1945 1.1414 30 1 -0.3633 0.1067 1.0221 31 1 -0.3634 0.8318 -0.6034 32 1 -0.3634 -0.9385 -0.4186 33 1 3.0065 3.7939 -0.2142 34 1 2.3493 6.5413 -0.1161 35 1 0.5554 8.1116 0.2535 36 1 2.5042 -1.8553 -2.0872 37 1 0.8033 -1.9782 -1.5346 38 1 3.0980 -3.8805 -1.1000 39 1 1.3500 -4.2260 -1.1951 40 1 1.4228 -6.8798 2.3600 41 1 0.6263 -2.0868 1.2804 42 1 2.2298 -1.9687 2.0681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033221544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:37 Heat of formation + Delta-G solvation = 7.778385 kcal Electronic energy + Delta-G solvation = -27388.059921 eV Core-core repulsion = 23460.637120 eV Total energy + Delta-G solvation = -3927.422802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01068 -41.43144 -39.43220 -38.50101 -37.09269 -36.55941 -34.49449 -32.46711 -31.40935 -30.75395 -29.83186 -28.31045 -26.92955 -25.60748 -24.64409 -23.05124 -22.54492 -21.63610 -20.75655 -19.80200 -19.56015 -19.28396 -18.28051 -17.62834 -17.29042 -17.14491 -16.85372 -16.59895 -16.50239 -15.96138 -15.48360 -15.31945 -15.19789 -14.81183 -14.55596 -14.44415 -14.17502 -13.91700 -13.89789 -13.70946 -13.49062 -13.09539 -13.03137 -12.99993 -12.96724 -12.51514 -12.39183 -11.86209 -11.79365 -11.57442 -11.42141 -11.37439 -11.00135 -10.48687 -10.46251 -10.20975 -9.82213 -9.18492 -8.74983 -8.69524 -5.38411 -1.07790 0.13852 0.41586 0.71728 0.99490 1.43974 1.53827 1.58214 1.74701 1.83053 2.07952 2.48438 2.56791 2.94046 3.10029 3.36637 3.57456 3.66179 3.68499 3.75407 3.85882 3.92826 4.00155 4.24561 4.29670 4.30666 4.34629 4.52259 4.61535 4.64254 4.73297 4.82933 4.88292 4.95191 4.97799 5.01816 5.13968 5.23370 5.30628 5.57665 5.76667 5.90813 6.06496 6.07562 6.76429 6.80366 6.85827 7.44922 8.10249 8.79370 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.002360 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.634923 B =11862.254757 C =12388.205749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.591 5.591 3 C 0.585 3.415 4 O -0.557 6.557 5 C -0.231 4.231 6 C -0.059 4.059 7 C -0.001 4.001 8 C -0.189 4.189 9 C 0.127 3.873 10 N -0.605 5.605 11 H 0.433 0.567 12 C 0.559 3.441 13 O -0.588 6.588 14 C -0.327 4.327 15 S 0.269 5.731 16 C 0.138 3.862 17 H 0.095 0.905 18 C -0.125 4.125 19 C 0.112 3.888 20 N -0.627 5.627 21 C -0.335 4.335 22 H 0.048 0.952 23 C -0.063 4.063 24 N -0.938 5.938 25 Si 1.076 2.924 26 H -0.308 1.308 27 H -0.235 1.235 28 H -0.291 1.291 29 C 0.132 3.868 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.224 0.776 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.024 0.976 39 H 0.042 0.958 40 H 0.252 0.748 41 H 0.047 0.953 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 34.987 -7.625 36.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.322 5.322 3 C 0.373 3.627 4 O -0.437 6.437 5 C -0.352 4.352 6 C -0.093 4.093 7 C -0.017 4.017 8 C -0.213 4.213 9 C 0.004 3.996 10 N -0.241 5.241 11 H 0.273 0.727 12 C 0.354 3.646 13 O -0.473 6.473 14 C -0.447 4.447 15 S 0.541 5.459 16 C 0.033 3.967 17 H 0.113 0.887 18 C -0.163 4.163 19 C -0.012 4.012 20 N -0.355 5.355 21 C -0.463 4.463 22 H 0.066 0.934 23 C -0.259 4.259 24 N -0.579 5.579 25 Si 0.902 3.098 26 H -0.237 1.237 27 H -0.159 1.159 28 H -0.218 1.218 29 C 0.006 3.994 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.200 0.800 35 H 0.240 0.760 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.360 32.413 -8.274 33.879 hybrid contribution 0.419 1.577 1.734 2.381 sum -4.941 33.989 -6.540 34.964 Atomic orbital electron populations 1.22283 0.77891 1.05401 1.04023 1.47570 1.07919 1.04759 1.71911 1.17399 0.86289 0.82701 0.76285 1.90799 1.14490 1.87004 1.51393 1.24136 0.99972 0.97272 1.13828 1.20241 1.02208 0.88955 0.97890 1.19610 0.89943 0.96083 0.96026 1.21808 1.02083 0.87121 1.10281 1.22336 0.81446 1.02382 0.93463 1.43050 1.12868 1.07385 1.60784 0.72714 1.15946 0.87117 0.83165 0.78323 1.90965 1.22481 1.81324 1.52535 1.25015 0.98920 1.02097 1.18623 1.84687 1.01035 0.94499 1.65691 1.22201 0.96968 0.81467 0.96072 0.88656 1.22924 1.04000 0.92233 0.97152 1.22032 0.98157 0.96968 0.84063 1.44785 1.83419 1.05513 1.01823 1.19820 1.50243 0.86716 0.89488 0.93376 1.26830 1.01006 0.90594 1.07508 1.71024 1.35111 1.31400 1.20413 0.83935 0.76851 0.74148 0.74875 1.23690 1.15905 1.21821 1.21925 0.98390 0.83756 0.95334 0.90383 0.88781 0.87068 0.81533 0.80006 0.75965 0.88703 0.88225 0.95812 0.94023 0.93939 0.93483 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 7.39 127.77 0.94 1.90 16 2 N -0.59 -15.84 2.91 -818.42 -2.38 -18.22 16 3 C 0.59 16.57 7.64 86.63 0.66 17.23 16 4 O -0.56 -19.38 16.18 -4.05 -0.07 -19.44 16 5 C -0.23 -5.23 6.11 23.74 0.14 -5.08 16 6 C -0.06 -1.13 9.82 21.67 0.21 -0.91 16 7 C 0.00 -0.01 6.08 -20.16 -0.12 -0.13 16 8 C -0.19 -1.32 10.29 23.84 0.25 -1.08 16 9 C 0.13 0.34 11.11 83.01 0.92 1.27 16 10 N -0.60 -5.54 5.23 -319.28 -1.67 -7.21 16 11 H 0.43 1.71 8.87 -92.71 -0.82 0.89 16 12 C 0.56 11.26 7.71 85.22 0.66 11.92 16 13 O -0.59 -16.50 17.89 -5.16 -0.09 -16.59 16 14 C -0.33 -6.65 6.48 23.45 0.15 -6.50 16 15 S 0.27 5.51 17.99 -56.49 -1.02 4.49 16 16 C 0.14 4.49 3.44 46.46 0.16 4.65 16 17 H 0.10 3.51 7.05 -2.39 -0.02 3.49 16 18 C -0.12 -3.76 6.49 31.78 0.21 -3.56 16 19 C 0.11 4.60 4.58 86.73 0.40 5.00 16 20 N -0.63 -30.40 3.38 -691.54 -2.34 -32.74 16 21 C -0.33 -19.57 10.40 84.03 0.87 -18.70 16 22 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 23 C -0.06 -3.77 5.43 84.86 0.46 -3.31 16 24 N -0.94 -60.04 13.70 21.65 0.30 -59.74 16 25 Si 1.08 52.42 25.10 68.60 1.72 54.14 16 26 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 27 H -0.23 -9.81 5.07 99.48 0.50 -9.30 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 C 0.13 5.20 6.79 86.93 0.59 5.79 16 30 H 0.08 1.49 7.42 -2.39 -0.02 1.47 16 31 H 0.09 1.59 5.20 -17.60 -0.09 1.50 16 32 H 0.11 2.07 6.36 -2.39 -0.02 2.05 16 33 H 0.17 2.84 7.99 -2.91 -0.02 2.81 16 34 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 35 H 0.22 -1.85 8.06 -2.91 -0.02 -1.87 16 36 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.10 2.49 6.48 -2.39 -0.02 2.47 16 38 H 0.02 1.02 4.74 -2.39 -0.01 1.01 16 39 H 0.04 1.76 6.74 -2.38 -0.02 1.75 16 40 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 41 H 0.05 1.72 6.94 -2.38 -0.02 1.70 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -85.36 348.41 0.92 -84.45 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -0.05 Total: 2.39 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.51 Total: 8.48 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.09 Total: -117.91 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.16 Total: -36.03 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 1.72 Total: 54.14 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.02 Total: 4.49 kcal Total: -85.36 0.92 -84.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033221544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.224 kcal (2) G-P(sol) polarization free energy of solvation -85.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds