Wall clock time and date at job start Wed Apr 1 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00043 * 2 1 4 4 O 1.21496 * 120.00172 * 184.26072 * 3 2 1 5 5 C 1.48354 * 120.00185 * 4.26441 * 3 2 1 6 6 C 1.41700 * 126.81251 * 173.25470 * 5 3 2 7 7 C 1.37151 * 103.79642 * 179.97438 * 6 5 3 8 8 C 1.47034 * 126.85758 * 180.02562 * 7 6 5 9 9 C 1.36200 * 125.33249 * 180.25122 * 8 7 6 10 10 C 1.37718 * 114.44155 * 180.18822 * 9 8 7 11 11 C 1.33730 * 115.19090 * 359.54059 * 10 9 8 12 12 S 1.75831 * 109.96316 * 0.25094 * 11 10 9 13 13 O 1.34572 * 106.28758 * 0.25999 * 7 6 5 14 14 N 1.20871 * 111.68650 * 359.52648 * 13 7 6 15 15 C 1.46503 * 120.00027 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.64014 * 178.30974 * 15 2 1 17 17 C 1.55159 * 110.71915 * 54.97044 * 15 2 1 18 18 C 1.54909 * 101.58455 * 277.13993 * 17 15 2 19 19 N 1.47422 * 104.83352 * 322.99260 * 18 17 15 20 20 C 1.36935 * 125.65156 * 204.09304 * 19 18 17 21 21 H 1.07997 * 120.00384 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99472 * 0.03739 * 20 19 18 23 23 N 1.31610 * 120.00403 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47138 * 90.00054 * 24 22 20 26 26 H 1.48491 * 109.47359 * 210.00303 * 24 22 20 27 27 H 1.48504 * 109.47241 * 330.00409 * 24 22 20 28 28 C 1.47026 * 108.70356 * 24.12844 * 19 18 17 29 29 H 1.09001 * 109.47538 * 84.27969 * 1 2 3 30 30 H 1.09001 * 109.47320 * 204.27937 * 1 2 3 31 31 H 1.09002 * 109.46870 * 324.27883 * 1 2 3 32 32 H 1.08001 * 128.09969 * 359.97255 * 6 5 3 33 33 H 1.07999 * 122.78155 * 359.97438 * 9 8 7 34 34 H 1.08000 * 122.40438 * 179.81313 * 10 9 8 35 35 H 1.08000 * 125.02027 * 180.21378 * 11 10 9 36 36 H 1.08997 * 111.00400 * 35.21699 * 17 15 2 37 37 H 1.09002 * 111.00245 * 159.06426 * 17 15 2 38 38 H 1.08997 * 110.36766 * 204.14873 * 18 17 15 39 39 H 1.09000 * 110.45573 * 81.87759 * 18 17 15 40 40 H 0.96998 * 120.00610 * 179.97438 * 23 22 20 41 41 H 1.09003 * 109.87966 * 239.52871 * 28 19 18 42 42 H 1.08994 * 109.88622 * 118.35785 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3513 1.1686 -0.0782 5 6 1.4002 2.4502 0.0955 6 6 1.9604 3.7436 0.2412 7 6 0.8673 4.5711 0.2789 8 6 0.8735 6.0347 0.4192 9 6 -0.2336 6.8270 0.4579 10 6 0.0323 8.1717 0.5914 11 6 1.3286 8.4903 0.6718 12 16 2.3117 7.0360 0.5703 13 8 -0.2124 3.7756 0.1671 14 7 0.0989 2.6124 0.0613 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0917 -0.0306 17 6 1.7506 -2.1601 -1.1893 18 6 0.4718 -2.8221 -0.6182 19 7 0.7744 -3.0624 0.8045 20 6 0.1810 -4.0076 1.5980 21 1 0.4737 -4.1048 2.6330 22 6 -0.7964 -4.8412 1.0719 23 7 -1.1526 -4.7233 -0.1896 24 14 -1.6053 -6.1310 2.1542 25 1 -2.8052 -5.5480 2.8067 26 1 -2.0096 -7.2926 1.3221 27 1 -0.6443 -6.5779 3.1943 28 6 1.8181 -2.1187 1.2305 29 1 -0.3634 0.1024 -1.0225 30 1 -0.3634 -0.9368 0.4226 31 1 -0.3633 0.8344 0.6000 32 1 3.0038 4.0143 0.3071 33 1 -1.2369 6.4338 0.3862 34 1 -0.7500 8.9151 0.6328 35 1 1.7147 9.4929 0.7820 36 1 1.5192 -1.5551 -2.0659 37 1 2.5075 -2.9091 -1.4222 38 1 0.2723 -3.7645 -1.1282 39 1 -0.3812 -2.1505 -0.7164 40 1 -1.8353 -5.3060 -0.5574 41 1 2.6909 -2.6668 1.5856 42 1 1.4350 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033299393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:43 Heat of formation + Delta-G solvation = 103.370377 kcal Electronic energy + Delta-G solvation = -27450.553512 eV Core-core repulsion = 23527.275890 eV Total energy + Delta-G solvation = -3923.277622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.23070 -41.39352 -39.16460 -38.68833 -36.23725 -35.29551 -34.24701 -33.57615 -31.14065 -29.85942 -29.58659 -27.88929 -26.80921 -25.77012 -25.24176 -23.92456 -22.29964 -22.05822 -20.85261 -19.78371 -19.27106 -19.05858 -18.96346 -18.48554 -17.47122 -17.32149 -16.74012 -16.53840 -16.29210 -15.77054 -15.64785 -15.10404 -14.61703 -14.47932 -14.33781 -14.19225 -13.95905 -13.77429 -13.65654 -13.56625 -13.38807 -13.15108 -13.00517 -12.81133 -12.60200 -12.44766 -12.06079 -12.00228 -11.86242 -11.80132 -11.71749 -11.46985 -11.42629 -11.27025 -10.70701 -9.88278 -9.50783 -9.33747 -8.90821 -7.77939 -5.22548 -0.72856 0.00263 0.30218 0.82140 0.95099 1.47303 1.48159 1.55391 1.57186 1.81256 1.90436 1.94342 2.48602 2.63795 3.15858 3.32539 3.60681 3.67453 3.74516 3.80744 3.96069 4.03665 4.18710 4.22487 4.25137 4.48191 4.52075 4.59025 4.60473 4.63600 4.66498 4.82991 4.87370 4.95630 5.03271 5.07724 5.27822 5.35765 5.43923 5.47437 5.60550 5.79582 6.09364 6.29347 6.65152 6.88068 7.09683 7.74960 8.38736 9.23429 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.002181 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.709763 B =12833.652580 C =13465.615701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.578 5.578 3 C 0.593 3.407 4 O -0.553 6.553 5 C -0.029 4.029 6 C -0.178 4.178 7 C 0.058 3.942 8 C -0.181 4.181 9 C -0.087 4.087 10 C -0.147 4.147 11 C -0.189 4.189 12 S 0.170 5.830 13 O 0.136 5.864 14 N -0.333 5.333 15 C 0.135 3.865 16 H 0.114 0.886 17 C -0.138 4.138 18 C 0.149 3.851 19 N -0.619 5.619 20 C -0.238 4.238 21 H 0.078 0.922 22 C -0.062 4.062 23 N -0.945 5.945 24 Si 0.979 3.021 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.128 3.872 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.012 0.988 40 H 0.248 0.752 41 H 0.042 0.958 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 29.593 -0.160 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.309 5.309 3 C 0.380 3.620 4 O -0.431 6.431 5 C -0.185 4.185 6 C -0.201 4.201 7 C -0.007 4.007 8 C -0.298 4.298 9 C -0.121 4.121 10 C -0.175 4.175 11 C -0.325 4.325 12 S 0.435 5.565 13 O 0.059 5.941 14 N -0.034 5.034 15 C 0.032 3.968 16 H 0.131 0.869 17 C -0.178 4.178 18 C 0.025 3.975 19 N -0.345 5.345 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.255 4.255 23 N -0.594 5.594 24 Si 0.807 3.193 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.002 3.998 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.211 0.789 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.218 0.782 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.299 28.196 -0.295 28.691 hybrid contribution -1.499 -0.552 0.472 1.665 sum 3.800 27.644 0.177 27.904 Atomic orbital electron populations 1.22290 0.77844 1.04167 1.02468 1.47740 1.08142 1.05052 1.69968 1.17176 0.86045 0.81992 0.76818 1.90736 1.13390 1.86852 1.52077 1.23118 0.90320 0.96526 1.08567 1.22688 1.01743 0.88704 1.06979 1.21535 0.85117 0.91539 1.02478 1.21882 0.99961 0.89965 1.18024 1.21091 0.99288 0.93482 0.98230 1.20327 0.97515 0.95881 1.03821 1.26435 0.96710 1.02882 1.06479 1.84407 1.05966 0.96504 1.69625 1.84922 1.32930 1.11421 1.64856 1.74390 1.15431 0.96761 1.16790 1.22102 0.96934 0.81656 0.96097 0.86862 1.23206 0.99682 0.98306 0.96566 1.21937 0.92243 0.99206 0.84161 1.44744 1.43343 1.37934 1.08528 1.19378 1.15148 1.08849 0.93288 0.90384 1.25564 1.00171 1.01911 0.97816 1.70020 1.34285 1.41752 1.13371 0.85074 0.78288 0.78303 0.77602 1.21452 1.21955 1.19693 1.21709 0.92133 0.91104 0.94852 0.92104 0.90302 0.89395 0.78854 0.82297 0.80855 0.78190 0.90406 0.89857 0.90807 0.97007 0.94249 0.94001 0.96016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.69 7.92 127.77 1.01 3.70 16 2 N -0.58 -20.98 2.82 -818.77 -2.31 -23.30 16 3 C 0.59 20.88 7.70 86.94 0.67 21.55 16 4 O -0.55 -21.22 16.33 -3.70 -0.06 -21.28 16 5 C -0.03 -0.88 6.85 42.79 0.29 -0.59 16 6 C -0.18 -4.31 10.78 22.87 0.25 -4.07 16 7 C 0.06 1.24 7.28 24.32 0.18 1.41 16 8 C -0.18 -2.89 6.45 24.10 0.16 -2.74 16 9 C -0.09 -1.06 10.17 21.67 0.22 -0.84 16 10 C -0.15 -1.14 10.15 21.12 0.21 -0.92 16 11 C -0.19 -1.31 11.21 66.80 0.75 -0.56 16 12 S 0.17 1.98 23.11 -56.49 -1.31 0.68 16 13 O 0.14 3.32 11.21 66.54 0.75 4.06 16 14 N -0.33 -9.67 8.66 -48.87 -0.42 -10.10 16 15 C 0.14 5.11 3.58 46.18 0.17 5.28 16 16 H 0.11 4.10 7.00 -2.39 -0.02 4.09 16 17 C -0.14 -5.35 6.53 31.99 0.21 -5.14 16 18 C 0.15 7.19 4.99 86.86 0.43 7.62 16 19 N -0.62 -31.53 2.97 -691.99 -2.06 -33.59 16 20 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 23 N -0.94 -55.26 10.09 21.65 0.22 -55.04 16 24 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.13 5.50 6.29 86.73 0.55 6.05 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 3.36 4.77 -2.39 -0.01 3.35 16 31 H 0.09 2.99 5.32 -2.39 -0.01 2.98 16 32 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 4.09 5.87 -2.39 -0.01 4.08 16 39 H 0.01 0.61 5.55 -2.39 -0.01 0.59 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 Total: -1.00 -67.49 359.22 4.32 -63.16 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.07 Total: 12.47 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.42 Total: 15.41 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.57 Total: -122.02 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.69 Total: -17.22 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.31 Total: 0.68 kcal Total: -67.49 4.32 -63.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033299393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.535 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds