Wall clock time and date at job start Wed Apr 1 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34768 * 120.00124 * 2 1 4 4 O 1.21736 * 119.99903 * 185.54939 * 3 2 1 5 5 C 1.46432 * 120.00282 * 5.55125 * 3 2 1 6 6 C 1.36852 * 126.11575 * 173.56333 * 5 3 2 7 7 N 1.30656 * 114.05486 * 179.78377 * 6 5 3 8 8 C 1.30438 * 117.26787 * 0.52630 * 7 6 5 9 9 C 1.47631 * 124.75834 * 179.68769 * 8 7 6 10 10 C 1.46921 * 127.16304 * 359.72777 * 9 8 7 11 11 C 1.34266 * 105.99583 * 179.83516 * 10 9 8 12 12 O 1.34188 * 109.09096 * 0.43595 * 11 10 9 13 13 C 1.33910 * 110.83679 * 359.71317 * 12 11 10 14 14 S 1.70926 * 110.48503 * 359.70420 * 8 7 6 15 15 C 1.46503 * 119.99893 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.91867 * 189.87918 * 15 2 1 17 17 C 1.55158 * 111.00738 * 65.97306 * 15 2 1 18 18 C 1.54322 * 103.10452 * 277.52033 * 17 15 2 19 19 N 1.47020 * 107.27207 * 337.71566 * 18 17 15 20 20 C 1.36935 * 125.65464 * 178.90568 * 19 18 17 21 21 H 1.07992 * 120.00585 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99389 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00259 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47064 * 89.99749 * 24 22 20 26 26 H 1.48492 * 109.47384 * 209.99954 * 24 22 20 27 27 H 1.48505 * 109.46861 * 330.00336 * 24 22 20 28 28 C 1.47426 * 108.70387 * 358.94204 * 19 18 17 29 29 H 1.09003 * 109.47798 * 178.93301 * 1 2 3 30 30 H 1.08997 * 109.47110 * 298.93667 * 1 2 3 31 31 H 1.09003 * 109.46912 * 58.93469 * 1 2 3 32 32 H 1.08004 * 122.97414 * 0.02562 * 6 5 3 33 33 H 1.07998 * 127.00208 * 0.02562 * 10 9 8 34 34 H 1.07999 * 125.44987 * 180.12887 * 11 10 9 35 35 H 1.08007 * 125.80057 * 180.02562 * 13 12 11 36 36 H 1.09000 * 110.72250 * 159.06725 * 17 15 2 37 37 H 1.09002 * 110.71603 * 35.96577 * 17 15 2 38 38 H 1.09004 * 109.88448 * 97.12748 * 18 17 15 39 39 H 1.08998 * 109.88736 * 218.14418 * 18 17 15 40 40 H 0.97002 * 119.99969 * 179.97438 * 23 22 20 41 41 H 1.09000 * 110.37337 * 142.96657 * 28 19 18 42 42 H 1.08999 * 110.36842 * 265.28967 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3519 1.1695 -0.1020 5 6 1.4119 2.4323 0.1227 6 6 1.9710 3.6738 0.2605 7 7 1.0999 4.6438 0.3457 8 6 -0.1626 4.3188 0.3012 9 6 -1.2820 5.2772 0.3894 10 6 -1.1918 6.7353 0.5451 11 6 -2.4572 7.1834 0.5737 12 8 -3.2946 6.1409 0.4605 13 6 -2.6139 4.9931 0.3494 14 16 -0.3391 2.6276 0.1269 15 6 2.1974 -1.2688 -0.0006 16 1 3.2607 -1.1044 0.1742 17 6 1.9648 -2.0448 -1.3239 18 6 0.6170 -2.7558 -1.0802 19 7 0.4296 -2.8493 0.3750 20 6 -0.6555 -3.3960 1.0066 21 1 -0.6987 -3.4166 2.0854 22 6 -1.6999 -3.9238 0.2599 23 7 -1.6470 -3.8992 -1.0551 24 14 -3.1799 -4.6703 1.1212 25 1 -4.2030 -3.6183 1.3486 26 1 -3.7554 -5.7456 0.2741 27 1 -2.7577 -5.2404 2.4259 28 6 1.6030 -2.2561 1.0419 29 1 -0.3635 -1.0275 -0.0191 30 1 -0.3633 0.4972 0.8993 31 1 -0.3633 0.5303 -0.8803 32 1 3.0381 3.8377 0.2918 33 1 -0.2911 7.3267 0.6182 34 1 -2.7536 8.2168 0.6767 35 1 -3.0471 4.0092 0.2453 36 1 2.7599 -2.7717 -1.4896 37 1 1.8911 -1.3570 -2.1663 38 1 -0.1934 -2.1756 -1.5217 39 1 0.6397 -3.7537 -1.5182 40 1 -2.3767 -4.2684 -1.5768 41 1 1.2980 -1.7199 1.9405 42 1 2.3301 -3.0295 1.2890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033478759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:59 Heat of formation + Delta-G solvation = 74.728786 kcal Electronic energy + Delta-G solvation = -27739.622039 eV Core-core repulsion = 23815.102424 eV Total energy + Delta-G solvation = -3924.519615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71132 -40.14423 -39.28501 -37.44286 -34.42889 -33.68357 -32.35702 -30.75975 -29.80669 -29.20744 -27.91431 -26.60816 -25.79306 -24.37427 -22.76770 -21.72455 -21.53515 -20.18135 -19.66439 -19.22794 -18.13335 -17.46291 -17.06874 -16.37270 -16.33949 -16.10550 -15.49481 -15.32326 -14.78424 -14.66619 -14.21809 -14.04082 -13.86548 -13.49855 -13.16411 -12.99109 -12.95651 -12.55378 -12.32391 -12.13802 -11.96856 -11.80323 -11.49964 -11.04144 -10.97225 -10.88654 -10.56938 -10.44262 -10.22893 -10.05338 -9.77399 -9.64583 -9.58011 -9.45582 -9.33716 -8.79538 -8.56665 -8.19395 -6.98090 -5.86071 -3.21816 -0.02103 1.11723 1.45829 1.55888 2.01188 2.68767 2.80876 3.17211 3.30536 3.31416 3.37803 3.38970 3.83537 4.35896 4.37375 4.67399 4.75323 4.86647 5.18243 5.24410 5.28618 5.34590 5.40124 5.45580 5.49359 5.56206 5.67099 5.73575 5.80602 6.00153 6.05898 6.08989 6.25411 6.37206 6.46069 6.53523 6.62462 6.71015 6.93970 7.42313 7.46082 7.54559 7.64687 7.69480 8.08238 8.25799 9.06329 9.65341 10.29845 11.24457 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003288 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.087824 B = 8513.742760 C =10517.548725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.580 5.580 3 C 0.589 3.411 4 O -0.540 6.540 5 C -0.297 4.297 6 C 0.122 3.878 7 N -0.479 5.479 8 C 0.079 3.921 9 C -0.130 4.130 10 C -0.172 4.172 11 C -0.040 4.040 12 O -0.172 6.172 13 C 0.007 3.993 14 S 0.234 5.766 15 C 0.125 3.875 16 H 0.102 0.898 17 C -0.156 4.156 18 C 0.171 3.829 19 N -0.603 5.603 20 C -0.236 4.236 21 H 0.079 0.921 22 C -0.003 4.003 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.125 3.875 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.188 0.812 33 H 0.158 0.842 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 17.739 1.432 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.310 5.310 3 C 0.376 3.624 4 O -0.420 6.420 5 C -0.422 4.422 6 C -0.038 4.038 7 N -0.194 5.194 8 C -0.190 4.190 9 C -0.135 4.135 10 C -0.193 4.193 11 C -0.106 4.106 12 O -0.067 6.067 13 C -0.066 4.066 14 S 0.496 5.504 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.195 4.195 18 C 0.047 3.953 19 N -0.330 5.330 20 C -0.364 4.364 21 H 0.097 0.903 22 C -0.200 4.200 23 N -0.565 5.565 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.002 4.002 29 H 0.176 0.824 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.176 0.824 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.313 17.496 1.290 17.593 hybrid contribution 0.347 -0.203 0.389 0.559 sum -0.966 17.293 1.679 17.401 Atomic orbital electron populations 1.22594 0.79025 1.09529 0.99624 1.47548 1.07387 1.05139 1.70924 1.16767 0.86499 0.81951 0.77133 1.90803 1.12841 1.86763 1.51594 1.26091 0.96028 0.99823 1.20213 1.22324 1.00842 0.84980 0.95678 1.66466 0.99767 1.35761 1.17389 1.24932 0.93475 0.98546 1.02031 1.19246 0.90256 0.92790 1.11204 1.22844 0.98273 0.92523 1.05700 1.23959 0.88198 0.92124 1.06347 1.83878 1.37734 1.14492 1.70621 1.24240 0.89771 0.89882 1.02691 1.84621 1.03576 0.98951 1.63266 1.22417 0.96066 0.81887 0.97548 0.87960 1.23281 1.00987 0.99032 0.96247 1.21262 0.90917 0.98559 0.84559 1.44664 1.17510 1.69289 1.01536 1.19046 0.94056 1.32307 0.90976 0.90275 1.24806 0.98705 1.00905 0.95610 1.69963 1.32644 1.50418 1.03515 0.86135 0.82591 0.78721 0.78401 1.21471 1.21645 1.20677 1.21997 0.90615 0.93333 0.94276 0.82415 0.92452 0.92644 0.79538 0.82385 0.77526 0.77193 0.91122 0.91797 0.93152 0.93605 0.93545 0.93548 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 7.74 59.84 0.46 1.08 16 2 N -0.58 -10.00 2.91 -172.81 -0.50 -10.50 16 3 C 0.59 10.21 7.63 -12.97 -0.10 10.11 16 4 O -0.54 -10.50 16.31 5.16 0.08 -10.42 16 5 C -0.30 -4.48 6.36 -36.79 -0.23 -4.72 16 6 C 0.12 1.75 11.15 -18.55 -0.21 1.55 16 7 N -0.48 -6.88 10.53 -12.04 -0.13 -7.01 16 8 C 0.08 1.03 7.25 -14.31 -0.10 0.93 16 9 C -0.13 -1.46 6.32 -103.27 -0.65 -2.12 16 10 C -0.17 -1.66 11.14 -37.47 -0.42 -2.08 16 11 C -0.04 -0.30 12.04 29.33 0.35 0.05 16 12 O -0.17 -1.54 10.54 7.06 0.07 -1.46 16 13 C 0.01 0.06 11.83 30.01 0.36 0.42 16 14 S 0.23 2.94 17.52 -107.50 -1.88 1.05 16 15 C 0.12 2.21 3.64 -65.51 -0.24 1.97 16 16 H 0.10 1.78 7.12 -51.93 -0.37 1.41 16 17 C -0.16 -2.83 6.54 -24.90 -0.16 -2.99 16 18 C 0.17 3.77 4.31 -3.07 -0.01 3.76 16 19 N -0.60 -13.72 1.92 -169.77 -0.33 -14.04 16 20 C -0.24 -5.93 9.93 -15.06 -0.15 -6.08 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 23 N -0.92 -24.65 10.31 55.49 0.57 -24.08 16 24 Si 0.91 20.53 29.55 -169.99 -5.02 15.51 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.12 2.40 6.42 -2.26 -0.01 2.39 16 29 H 0.16 3.19 3.47 -51.93 -0.18 3.01 16 30 H 0.06 0.88 6.32 -42.32 -0.27 0.61 16 31 H 0.06 0.85 6.61 -48.11 -0.32 0.53 16 32 H 0.19 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.21 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.20 6.38 -51.93 -0.33 0.87 16 39 H 0.05 1.14 7.50 -51.93 -0.39 0.75 16 40 H 0.25 6.71 8.31 -40.82 -0.34 6.38 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -30.44 357.04 -7.75 -38.20 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.78 Total: 3.28 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.22 Total: 4.09 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.38 Total: -55.63 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.16 Total: -11.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.88 Total: 1.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.44 -7.75 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033478759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.924 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds