Wall clock time and date at job start Wed Apr 1 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34768 * 120.00124 * 2 1 4 4 O 1.21736 * 119.99903 * 185.54939 * 3 2 1 5 5 C 1.46432 * 120.00282 * 5.55125 * 3 2 1 6 6 C 1.36852 * 126.11575 * 173.56333 * 5 3 2 7 7 N 1.30656 * 114.05486 * 179.78377 * 6 5 3 8 8 C 1.30438 * 117.26787 * 0.52630 * 7 6 5 9 9 C 1.47631 * 124.75834 * 179.68769 * 8 7 6 10 10 C 1.46921 * 127.16304 * 359.72777 * 9 8 7 11 11 C 1.34266 * 105.99583 * 179.83516 * 10 9 8 12 12 O 1.34188 * 109.09096 * 0.43595 * 11 10 9 13 13 C 1.33910 * 110.83679 * 359.71317 * 12 11 10 14 14 S 1.70926 * 110.48503 * 359.70420 * 8 7 6 15 15 C 1.46503 * 119.99893 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.91867 * 189.87918 * 15 2 1 17 17 C 1.55158 * 111.00738 * 65.97306 * 15 2 1 18 18 C 1.54322 * 103.10452 * 277.52033 * 17 15 2 19 19 N 1.47020 * 107.27207 * 337.71566 * 18 17 15 20 20 C 1.36935 * 125.65464 * 178.90568 * 19 18 17 21 21 H 1.07992 * 120.00585 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99389 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00259 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47064 * 89.99749 * 24 22 20 26 26 H 1.48492 * 109.47384 * 209.99954 * 24 22 20 27 27 H 1.48505 * 109.46861 * 330.00336 * 24 22 20 28 28 C 1.47426 * 108.70387 * 358.94204 * 19 18 17 29 29 H 1.09003 * 109.47798 * 178.93301 * 1 2 3 30 30 H 1.08997 * 109.47110 * 298.93667 * 1 2 3 31 31 H 1.09003 * 109.46912 * 58.93469 * 1 2 3 32 32 H 1.08004 * 122.97414 * 0.02562 * 6 5 3 33 33 H 1.07998 * 127.00208 * 0.02562 * 10 9 8 34 34 H 1.07999 * 125.44987 * 180.12887 * 11 10 9 35 35 H 1.08007 * 125.80057 * 180.02562 * 13 12 11 36 36 H 1.09000 * 110.72250 * 159.06725 * 17 15 2 37 37 H 1.09002 * 110.71603 * 35.96577 * 17 15 2 38 38 H 1.09004 * 109.88448 * 97.12748 * 18 17 15 39 39 H 1.08998 * 109.88736 * 218.14418 * 18 17 15 40 40 H 0.97002 * 119.99969 * 179.97438 * 23 22 20 41 41 H 1.09000 * 110.37337 * 142.96657 * 28 19 18 42 42 H 1.08999 * 110.36842 * 265.28967 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3519 1.1695 -0.1020 5 6 1.4119 2.4323 0.1227 6 6 1.9710 3.6738 0.2605 7 7 1.0999 4.6438 0.3457 8 6 -0.1626 4.3188 0.3012 9 6 -1.2820 5.2772 0.3894 10 6 -1.1918 6.7353 0.5451 11 6 -2.4572 7.1834 0.5737 12 8 -3.2946 6.1409 0.4605 13 6 -2.6139 4.9931 0.3494 14 16 -0.3391 2.6276 0.1269 15 6 2.1974 -1.2688 -0.0006 16 1 3.2607 -1.1044 0.1742 17 6 1.9648 -2.0448 -1.3239 18 6 0.6170 -2.7558 -1.0802 19 7 0.4296 -2.8493 0.3750 20 6 -0.6555 -3.3960 1.0066 21 1 -0.6987 -3.4166 2.0854 22 6 -1.6999 -3.9238 0.2599 23 7 -1.6470 -3.8992 -1.0551 24 14 -3.1799 -4.6703 1.1212 25 1 -4.2030 -3.6183 1.3486 26 1 -3.7554 -5.7456 0.2741 27 1 -2.7577 -5.2404 2.4259 28 6 1.6030 -2.2561 1.0419 29 1 -0.3635 -1.0275 -0.0191 30 1 -0.3633 0.4972 0.8993 31 1 -0.3633 0.5303 -0.8803 32 1 3.0381 3.8377 0.2918 33 1 -0.2911 7.3267 0.6182 34 1 -2.7536 8.2168 0.6767 35 1 -3.0471 4.0092 0.2453 36 1 2.7599 -2.7717 -1.4896 37 1 1.8911 -1.3570 -2.1663 38 1 -0.1934 -2.1756 -1.5217 39 1 0.6397 -3.7537 -1.5182 40 1 -2.3767 -4.2684 -1.5768 41 1 1.2980 -1.7199 1.9405 42 1 2.3301 -3.0295 1.2890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033478759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:58 Heat of formation + Delta-G solvation = 57.085958 kcal Electronic energy + Delta-G solvation = -27740.387090 eV Core-core repulsion = 23815.102424 eV Total energy + Delta-G solvation = -3925.284665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40755 -41.46311 -40.47288 -38.96584 -35.96365 -34.55300 -34.04657 -31.76077 -31.15751 -30.43596 -29.44474 -27.90929 -27.08238 -26.05808 -23.89637 -22.73221 -22.26316 -21.94588 -20.95529 -20.17412 -19.38810 -18.88803 -18.40961 -17.58354 -17.36963 -17.06748 -16.75339 -16.64353 -16.26349 -15.74216 -15.61705 -15.42368 -15.31238 -14.51856 -14.36876 -14.23919 -13.86498 -13.83088 -13.75240 -13.48346 -13.36901 -13.30343 -12.84644 -12.78268 -12.60993 -12.38709 -12.02171 -11.98412 -11.82319 -11.55224 -11.47650 -11.08855 -10.68901 -10.67252 -10.50444 -10.12535 -9.80243 -9.25738 -8.83893 -7.81136 -5.17346 -1.05919 0.07348 0.50201 0.68340 1.17663 1.51779 1.53785 1.61122 1.75625 1.83954 2.06259 2.13845 2.52627 2.91338 3.38484 3.43828 3.64841 3.74693 3.85278 3.90552 3.97744 4.05222 4.14219 4.19387 4.30349 4.41226 4.55413 4.58291 4.70762 4.77460 4.85279 4.93615 5.00782 5.02511 5.03093 5.14732 5.36171 5.49986 5.52131 5.66671 5.79157 6.02583 6.19848 6.24777 6.54447 6.91041 7.12860 7.77355 8.41493 9.28074 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003288 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.087824 B = 8513.742760 C =10517.548725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.583 5.583 3 C 0.593 3.407 4 O -0.566 6.566 5 C -0.330 4.330 6 C 0.131 3.869 7 N -0.502 5.502 8 C 0.089 3.911 9 C -0.169 4.169 10 C -0.198 4.198 11 C -0.021 4.021 12 O -0.175 6.175 13 C 0.023 3.977 14 S 0.266 5.734 15 C 0.134 3.866 16 H 0.112 0.888 17 C -0.143 4.143 18 C 0.185 3.815 19 N -0.614 5.614 20 C -0.239 4.239 21 H 0.082 0.918 22 C -0.053 4.053 23 N -0.944 5.944 24 Si 0.970 3.030 25 H -0.282 1.282 26 H -0.300 1.300 27 H -0.275 1.275 28 C 0.126 3.874 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.194 0.806 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.010 0.990 40 H 0.247 0.753 41 H 0.049 0.951 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 19.509 2.251 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.313 5.313 3 C 0.382 3.618 4 O -0.448 6.448 5 C -0.455 4.455 6 C -0.030 4.030 7 N -0.217 5.217 8 C -0.179 4.179 9 C -0.174 4.174 10 C -0.219 4.219 11 C -0.086 4.086 12 O -0.069 6.069 13 C -0.050 4.050 14 S 0.529 5.471 15 C 0.030 3.970 16 H 0.130 0.870 17 C -0.182 4.182 18 C 0.061 3.939 19 N -0.341 5.341 20 C -0.367 4.367 21 H 0.100 0.900 22 C -0.247 4.247 23 N -0.593 5.593 24 Si 0.799 3.201 25 H -0.209 1.209 26 H -0.227 1.227 27 H -0.200 1.200 28 C 0.000 4.000 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.211 0.789 33 H 0.176 0.824 34 H 0.265 0.735 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.355 19.274 2.133 19.534 hybrid contribution 0.599 -0.601 0.168 0.865 sum -1.756 18.673 2.301 18.896 Atomic orbital electron populations 1.22429 0.78732 1.07900 1.00940 1.47561 1.07526 1.05083 1.71142 1.16932 0.86243 0.82386 0.76261 1.90777 1.13955 1.87221 1.52872 1.25881 0.97618 0.98993 1.22999 1.22491 1.01366 0.84829 0.94363 1.66534 1.00331 1.35825 1.18991 1.25280 0.93661 0.99102 0.99830 1.19477 0.90574 0.93523 1.13796 1.23002 0.99459 0.92007 1.07429 1.24682 0.87167 0.93179 1.03594 1.83923 1.38016 1.14783 1.70212 1.24687 0.89087 0.90855 1.00394 1.84328 1.01478 0.98459 1.62831 1.22296 0.96447 0.81845 0.96438 0.87031 1.23155 0.99096 0.99163 0.96809 1.20962 0.92345 0.96528 0.84086 1.44788 1.18010 1.69250 1.02036 1.19327 0.94689 1.31431 0.91284 0.89986 1.25472 1.01088 1.01942 0.96161 1.70149 1.32980 1.51528 1.04601 0.85210 0.79850 0.77649 0.77372 1.20862 1.22727 1.20030 1.22078 0.89642 0.93726 0.94553 0.85470 0.91115 0.91460 0.78880 0.82382 0.73542 0.74911 0.89546 0.91115 0.95384 0.97215 0.94338 0.93316 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 7.74 127.77 0.99 2.45 16 2 N -0.58 -19.71 2.91 -818.84 -2.38 -22.09 16 3 C 0.59 20.16 7.63 86.38 0.66 20.82 16 4 O -0.57 -21.75 16.31 -4.46 -0.07 -21.82 16 5 C -0.33 -9.74 6.36 24.08 0.15 -9.58 16 6 C 0.13 3.69 11.15 84.54 0.94 4.63 16 7 N -0.50 -14.04 10.53 -192.01 -2.02 -16.06 16 8 C 0.09 2.22 7.25 87.38 0.63 2.86 16 9 C -0.17 -3.50 6.32 -18.99 -0.12 -3.62 16 10 C -0.20 -3.46 11.14 23.64 0.26 -3.20 16 11 C -0.02 -0.24 12.04 66.91 0.81 0.56 16 12 O -0.17 -2.58 10.54 2.35 0.02 -2.55 16 13 C 0.02 0.36 11.83 67.35 0.80 1.16 16 14 S 0.27 6.33 17.52 -56.49 -0.99 5.34 16 15 C 0.13 4.63 3.64 46.56 0.17 4.80 16 16 H 0.11 3.73 7.12 -2.39 -0.02 3.71 16 17 C -0.14 -5.11 6.54 31.78 0.21 -4.90 16 18 C 0.19 8.33 4.31 86.73 0.37 8.70 16 19 N -0.61 -28.06 1.92 -691.02 -1.33 -29.39 16 20 C -0.24 -12.01 9.93 84.03 0.83 -11.17 16 21 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.05 -2.73 5.49 84.86 0.47 -2.26 16 23 N -0.94 -51.85 10.31 21.65 0.22 -51.62 16 24 Si 0.97 42.32 29.55 68.60 2.03 44.35 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 28 C 0.13 4.77 6.42 87.03 0.56 5.32 16 29 H 0.13 5.15 3.47 -2.39 -0.01 5.15 16 30 H 0.07 2.09 6.32 -8.50 -0.05 2.03 16 31 H 0.07 2.01 6.61 -4.82 -0.03 1.98 16 32 H 0.19 4.97 8.06 -2.91 -0.02 4.94 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.03 1.38 6.38 -2.38 -0.02 1.36 16 39 H 0.01 0.50 7.50 -2.39 -0.02 0.48 16 40 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.05 357.04 4.23 -61.82 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.01 Total: 15.47 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 7.73 Total: 16.56 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.51 Total: -119.16 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -0.99 Total: 5.34 kcal Total: -66.05 4.23 -61.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033478759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.908 kcal (2) G-P(sol) polarization free energy of solvation -66.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds