Wall clock time and date at job start Wed Apr 1 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99931 * 2 1 4 4 O 1.21634 * 120.00295 * 183.31044 * 3 2 1 5 5 C 1.47273 * 119.99821 * 3.30668 * 3 2 1 6 6 C 1.35087 * 122.42722 * 172.73907 * 5 3 2 7 7 S 1.71000 * 109.14369 * 179.75061 * 6 5 3 8 8 C 1.76001 * 90.59078 * 0.34227 * 7 6 5 9 9 C 1.47873 * 125.31793 * 179.91558 * 8 7 6 10 10 C 1.46849 * 127.14681 * 359.69964 * 9 8 7 11 11 C 1.34302 * 106.01080 * 179.71113 * 10 9 8 12 12 O 1.34165 * 109.05263 * 0.26056 * 11 10 9 13 13 C 1.34006 * 110.80269 * 359.97438 * 12 11 10 14 14 N 1.29881 * 109.36160 * 359.65140 * 8 7 6 15 15 C 1.46502 * 120.00099 * 179.97438 * 2 1 3 16 16 H 1.09005 * 110.63876 * 178.30866 * 15 2 1 17 17 C 1.55158 * 110.71715 * 54.97750 * 15 2 1 18 18 C 1.54916 * 101.58113 * 277.13694 * 17 15 2 19 19 N 1.47429 * 104.83024 * 322.99285 * 18 17 15 20 20 C 1.36933 * 125.64841 * 204.09237 * 19 18 17 21 21 H 1.07994 * 120.00301 * 170.53792 * 20 19 18 22 22 C 1.38821 * 119.99730 * 350.53218 * 20 19 18 23 23 N 1.31610 * 120.00035 * 3.50093 * 22 20 19 24 24 Si 1.86801 * 119.99644 * 183.49970 * 22 20 19 25 25 H 1.48506 * 109.47142 * 94.99826 * 24 22 20 26 26 H 1.48498 * 109.46797 * 214.99790 * 24 22 20 27 27 H 1.48497 * 109.47528 * 334.99758 * 24 22 20 28 28 C 1.47022 * 108.70405 * 24.12990 * 19 18 17 29 29 H 1.09000 * 109.47353 * 84.26334 * 1 2 3 30 30 H 1.09002 * 109.47063 * 204.26764 * 1 2 3 31 31 H 1.09007 * 109.47251 * 324.25964 * 1 2 3 32 32 H 1.08007 * 125.42918 * 359.97438 * 6 5 3 33 33 H 1.08006 * 126.99262 * 359.96431 * 10 9 8 34 34 H 1.08001 * 125.47035 * 180.23748 * 11 10 9 35 35 H 1.08001 * 125.78937 * 180.02562 * 13 12 11 36 36 H 1.08997 * 111.00934 * 35.21064 * 17 15 2 37 37 H 1.09003 * 111.00300 * 159.06829 * 17 15 2 38 38 H 1.08996 * 110.36886 * 204.15771 * 18 17 15 39 39 H 1.08999 * 110.45857 * 81.87835 * 18 17 15 40 40 H 0.97006 * 120.00283 * 179.97438 * 23 22 20 41 41 H 1.09002 * 109.87829 * 239.52292 * 28 19 18 42 42 H 1.08999 * 109.88763 * 118.36007 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3537 1.1682 -0.0608 5 6 1.4043 2.4415 0.0736 6 6 2.0289 3.6302 0.2210 7 16 0.8595 4.8773 0.2588 8 6 -0.4328 3.6958 0.0799 9 6 -1.8766 4.0102 0.0226 10 6 -2.4992 5.3374 0.1082 11 6 -3.8225 5.1331 0.0037 12 8 -4.0535 3.8183 -0.1299 13 6 -2.9041 3.1295 -0.1177 14 7 0.0803 2.5053 0.0003 15 6 2.1975 -1.2687 0.0006 16 1 3.2727 -1.0916 -0.0296 17 6 1.7507 -2.1610 -1.1875 18 6 0.4718 -2.8226 -0.6158 19 7 0.7745 -3.0618 0.8071 20 6 0.1812 -4.0063 1.6014 21 1 0.5751 -4.2082 2.5864 22 6 -0.9268 -4.7042 1.1404 23 7 -1.3651 -4.5078 -0.0849 24 14 -1.7954 -5.9219 2.2593 25 1 -2.9389 -5.2509 2.9284 26 1 -2.2947 -7.0652 1.4538 27 1 -0.8432 -6.4178 3.2854 28 6 1.8182 -2.1176 1.2323 29 1 -0.3634 0.1027 -1.0225 30 1 -0.3633 -0.9369 0.4224 31 1 -0.3634 0.8342 0.6003 32 1 3.0969 3.7709 0.2987 33 1 -1.9952 6.2853 0.2266 34 1 -4.5791 5.9036 0.0242 35 1 -2.8092 2.0575 -0.2087 36 1 1.5192 -1.5568 -2.0646 37 1 2.5076 -2.9102 -1.4197 38 1 0.2724 -3.7655 -1.1249 39 1 -0.3811 -2.1512 -0.7146 40 1 -2.1391 -4.9958 -0.4072 41 1 2.6909 -2.6654 1.5879 42 1 1.4351 -1.4728 2.0232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033510618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:19 Heat of formation + Delta-G solvation = 84.392776 kcal Electronic energy + Delta-G solvation = -27963.777870 eV Core-core repulsion = 24039.677317 eV Total energy + Delta-G solvation = -3924.100553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71069 -40.62481 -38.83736 -37.28742 -34.32490 -33.72503 -32.04521 -30.95423 -29.35219 -29.22491 -28.04453 -26.20259 -25.87462 -24.44815 -23.24525 -22.00853 -20.64717 -20.19014 -19.58267 -19.09296 -18.24070 -17.79431 -16.94591 -16.32124 -16.17397 -16.04527 -15.50014 -15.37654 -14.68972 -14.47470 -14.09104 -13.85789 -13.75920 -13.49948 -13.24681 -12.83459 -12.79257 -12.55087 -12.13842 -12.06052 -11.91101 -11.68497 -11.51562 -11.03953 -10.89727 -10.80282 -10.71799 -10.35770 -10.09266 -9.95645 -9.86335 -9.76779 -9.62898 -9.34966 -9.23163 -8.59706 -8.49521 -8.12178 -6.80853 -5.71626 -3.08681 0.14717 0.97319 1.39223 1.42266 1.73639 2.57484 2.73084 3.29788 3.39485 3.45160 3.46452 3.46921 3.68896 4.46978 4.48854 4.50750 4.77408 4.96918 5.10130 5.16678 5.37341 5.42017 5.48057 5.50538 5.66217 5.75489 5.78783 5.90468 5.93205 5.97704 6.19876 6.33053 6.39328 6.58946 6.62357 6.66296 6.73036 6.77343 7.05138 7.31611 7.52194 7.60278 7.75374 7.83022 8.29482 8.36886 9.20189 9.80614 10.47514 11.37198 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.003322 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.478673 B = 8426.191502 C =10440.475017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.571 5.571 3 C 0.584 3.416 4 O -0.549 6.549 5 C 0.027 3.973 6 C -0.221 4.221 7 S 0.168 5.832 8 C 0.127 3.873 9 C -0.141 4.141 10 C -0.199 4.199 11 C -0.029 4.029 12 O -0.174 6.174 13 C 0.044 3.956 14 N -0.429 5.429 15 C 0.124 3.876 16 H 0.100 0.900 17 C -0.155 4.155 18 C 0.158 3.842 19 N -0.602 5.602 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.128 3.872 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.190 0.810 33 H 0.155 0.845 34 H 0.208 0.792 35 H 0.219 0.781 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 22.823 -1.662 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.301 5.301 3 C 0.368 3.632 4 O -0.428 6.428 5 C -0.108 4.108 6 C -0.363 4.363 7 S 0.427 5.573 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.219 4.219 11 C -0.095 4.095 12 O -0.069 6.069 13 C -0.030 4.030 14 N -0.145 5.145 15 C 0.021 3.979 16 H 0.118 0.882 17 C -0.195 4.195 18 C 0.033 3.967 19 N -0.329 5.329 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.001 3.999 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.207 0.793 33 H 0.173 0.827 34 H 0.225 0.775 35 H 0.235 0.765 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.835 23.159 -1.690 23.293 hybrid contribution 0.227 -1.284 0.554 1.416 sum -1.608 21.875 -1.137 21.963 Atomic orbital electron populations 1.22626 0.77897 1.05287 1.02180 1.47656 1.08234 1.04755 1.69421 1.17201 0.86215 0.82333 0.77403 1.90767 1.12826 1.86886 1.52312 1.20206 0.88180 0.95336 1.07098 1.26431 1.06657 0.95612 1.07599 1.83694 0.96670 1.11157 1.65821 1.25053 0.96183 0.90174 1.03424 1.19019 0.88483 0.93768 1.13309 1.22739 0.93762 0.96981 1.08435 1.23904 0.97335 0.83176 1.05111 1.83952 1.33639 1.18822 1.70494 1.24499 0.81086 0.98206 0.99219 1.67558 1.09896 1.21248 1.15821 1.22211 0.96403 0.82019 0.97286 0.88211 1.23358 1.01564 0.98282 0.96280 1.21840 0.90720 0.99774 0.84354 1.44516 1.43371 1.37423 1.07604 1.19048 1.07172 1.11893 0.97300 0.90622 1.24802 0.97947 1.00544 0.96929 1.69904 1.26698 1.44998 1.15111 0.86109 0.79720 0.80400 0.79603 1.21642 1.21757 1.20675 1.21635 0.92879 0.91353 0.94045 0.93203 0.88312 0.88983 0.79274 0.82687 0.77548 0.76469 0.91979 0.90995 0.89550 0.95120 0.93742 0.94912 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 7.72 59.85 0.46 1.57 16 2 N -0.57 -10.51 2.82 -173.15 -0.49 -11.00 16 3 C 0.58 10.51 7.64 -12.59 -0.10 10.41 16 4 O -0.55 -10.90 16.04 5.25 0.08 -10.82 16 5 C 0.03 0.41 6.45 -84.92 -0.55 -0.14 16 6 C -0.22 -2.72 10.56 29.61 0.31 -2.41 16 7 S 0.17 1.60 23.07 -107.50 -2.48 -0.88 16 8 C 0.13 1.50 7.46 -14.43 -0.11 1.39 16 9 C -0.14 -1.45 6.32 -103.25 -0.65 -2.10 16 10 C -0.20 -1.52 11.04 -37.49 -0.41 -1.94 16 11 C -0.03 -0.19 12.04 29.34 0.35 0.16 16 12 O -0.17 -1.59 10.54 6.87 0.07 -1.52 16 13 C 0.04 0.43 12.05 29.95 0.36 0.79 16 14 N -0.43 -6.07 6.63 -8.11 -0.05 -6.13 16 15 C 0.12 2.41 3.58 -66.09 -0.24 2.17 16 16 H 0.10 1.91 6.99 -51.93 -0.36 1.55 16 17 C -0.16 -3.05 6.53 -24.58 -0.16 -3.21 16 18 C 0.16 3.72 4.70 -2.52 -0.01 3.70 16 19 N -0.60 -15.11 2.97 -170.07 -0.51 -15.62 16 20 C -0.23 -6.20 10.26 -15.06 -0.15 -6.35 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.12 10.32 55.49 0.57 -25.55 16 24 Si 0.91 21.80 29.56 -169.99 -5.02 16.78 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 C 0.13 2.76 6.29 -3.06 -0.02 2.74 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.06 4.77 -51.93 -0.25 1.81 16 31 H 0.09 1.52 5.21 -51.93 -0.27 1.25 16 32 H 0.19 2.10 8.00 -52.48 -0.42 1.68 16 33 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.21 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.22 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.09 2.31 6.43 -51.93 -0.33 1.98 16 39 H 0.03 0.75 5.55 -51.93 -0.29 0.46 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -32.24 359.28 -8.26 -40.51 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.85 Total: 2.29 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.01 Total: 6.52 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.48 Total: -58.29 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.16 Total: -12.34 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.48 Total: -0.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.24 -8.26 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033510618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.899 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds