Wall clock time and date at job start Wed Apr 1 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99931 * 2 1 4 4 O 1.21634 * 120.00295 * 183.31044 * 3 2 1 5 5 C 1.47273 * 119.99821 * 3.30668 * 3 2 1 6 6 C 1.35087 * 122.42722 * 172.73907 * 5 3 2 7 7 S 1.71000 * 109.14369 * 179.75061 * 6 5 3 8 8 C 1.76001 * 90.59078 * 0.34227 * 7 6 5 9 9 C 1.47873 * 125.31793 * 179.91558 * 8 7 6 10 10 C 1.46849 * 127.14681 * 359.69964 * 9 8 7 11 11 C 1.34302 * 106.01080 * 179.71113 * 10 9 8 12 12 O 1.34165 * 109.05263 * 0.26056 * 11 10 9 13 13 C 1.34006 * 110.80269 * 359.97438 * 12 11 10 14 14 N 1.29881 * 109.36160 * 359.65140 * 8 7 6 15 15 C 1.46502 * 120.00099 * 179.97438 * 2 1 3 16 16 H 1.09005 * 110.63876 * 178.30866 * 15 2 1 17 17 C 1.55158 * 110.71715 * 54.97750 * 15 2 1 18 18 C 1.54916 * 101.58113 * 277.13694 * 17 15 2 19 19 N 1.47429 * 104.83024 * 322.99285 * 18 17 15 20 20 C 1.36933 * 125.64841 * 204.09237 * 19 18 17 21 21 H 1.07994 * 120.00301 * 170.53792 * 20 19 18 22 22 C 1.38821 * 119.99730 * 350.53218 * 20 19 18 23 23 N 1.31610 * 120.00035 * 3.50093 * 22 20 19 24 24 Si 1.86801 * 119.99644 * 183.49970 * 22 20 19 25 25 H 1.48506 * 109.47142 * 94.99826 * 24 22 20 26 26 H 1.48498 * 109.46797 * 214.99790 * 24 22 20 27 27 H 1.48497 * 109.47528 * 334.99758 * 24 22 20 28 28 C 1.47022 * 108.70405 * 24.12990 * 19 18 17 29 29 H 1.09000 * 109.47353 * 84.26334 * 1 2 3 30 30 H 1.09002 * 109.47063 * 204.26764 * 1 2 3 31 31 H 1.09007 * 109.47251 * 324.25964 * 1 2 3 32 32 H 1.08007 * 125.42918 * 359.97438 * 6 5 3 33 33 H 1.08006 * 126.99262 * 359.96431 * 10 9 8 34 34 H 1.08001 * 125.47035 * 180.23748 * 11 10 9 35 35 H 1.08001 * 125.78937 * 180.02562 * 13 12 11 36 36 H 1.08997 * 111.00934 * 35.21064 * 17 15 2 37 37 H 1.09003 * 111.00300 * 159.06829 * 17 15 2 38 38 H 1.08996 * 110.36886 * 204.15771 * 18 17 15 39 39 H 1.08999 * 110.45857 * 81.87835 * 18 17 15 40 40 H 0.97006 * 120.00283 * 179.97438 * 23 22 20 41 41 H 1.09002 * 109.87829 * 239.52292 * 28 19 18 42 42 H 1.08999 * 109.88763 * 118.36007 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3537 1.1682 -0.0608 5 6 1.4043 2.4415 0.0736 6 6 2.0289 3.6302 0.2210 7 16 0.8595 4.8773 0.2588 8 6 -0.4328 3.6958 0.0799 9 6 -1.8766 4.0102 0.0226 10 6 -2.4992 5.3374 0.1082 11 6 -3.8225 5.1331 0.0037 12 8 -4.0535 3.8183 -0.1299 13 6 -2.9041 3.1295 -0.1177 14 7 0.0803 2.5053 0.0003 15 6 2.1975 -1.2687 0.0006 16 1 3.2727 -1.0916 -0.0296 17 6 1.7507 -2.1610 -1.1875 18 6 0.4718 -2.8226 -0.6158 19 7 0.7745 -3.0618 0.8071 20 6 0.1812 -4.0063 1.6014 21 1 0.5751 -4.2082 2.5864 22 6 -0.9268 -4.7042 1.1404 23 7 -1.3651 -4.5078 -0.0849 24 14 -1.7954 -5.9219 2.2593 25 1 -2.9389 -5.2509 2.9284 26 1 -2.2947 -7.0652 1.4538 27 1 -0.8432 -6.4178 3.2854 28 6 1.8182 -2.1176 1.2323 29 1 -0.3634 0.1027 -1.0225 30 1 -0.3633 -0.9369 0.4224 31 1 -0.3634 0.8342 0.6003 32 1 3.0969 3.7709 0.2987 33 1 -1.9952 6.2853 0.2266 34 1 -4.5791 5.9036 0.0242 35 1 -2.8092 2.0575 -0.2087 36 1 1.5192 -1.5568 -2.0646 37 1 2.5076 -2.9102 -1.4197 38 1 0.2724 -3.7655 -1.1249 39 1 -0.3811 -2.1512 -0.7146 40 1 -2.1391 -4.9958 -0.4072 41 1 2.6909 -2.6654 1.5879 42 1 1.4351 -1.4728 2.0232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033510618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:18 Heat of formation + Delta-G solvation = 65.145394 kcal Electronic energy + Delta-G solvation = -27964.612499 eV Core-core repulsion = 24039.677317 eV Total energy + Delta-G solvation = -3924.935182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34925 -41.85833 -40.15829 -38.85799 -35.99781 -34.48431 -33.92457 -31.75280 -31.10628 -30.09695 -29.74281 -27.64942 -27.13734 -26.15389 -24.46712 -22.61523 -22.10683 -21.79777 -20.70983 -20.09450 -19.44922 -18.92211 -18.66131 -17.58269 -17.23156 -17.02076 -16.73769 -16.69101 -16.26956 -15.70184 -15.58958 -15.23719 -15.02129 -14.42731 -14.42015 -14.15183 -13.83761 -13.80051 -13.62284 -13.40053 -13.29556 -13.16543 -13.00788 -12.86294 -12.78756 -12.44915 -12.06154 -11.96016 -11.85798 -11.55556 -11.51288 -11.23470 -10.71301 -10.61483 -10.40291 -10.00723 -9.69707 -9.22112 -8.84358 -7.81759 -5.21061 -0.75563 0.12207 0.45778 0.48856 1.05923 1.48235 1.48868 1.58021 1.71910 1.95118 2.13194 2.27058 2.50389 2.76965 3.33942 3.52581 3.69248 3.82499 3.85400 3.92492 4.02117 4.13349 4.19148 4.26274 4.43487 4.52225 4.62300 4.66881 4.70477 4.78087 4.85028 4.88216 4.99500 5.05826 5.11385 5.25953 5.41942 5.48217 5.52919 5.64527 5.80154 6.09362 6.25290 6.27488 6.40994 6.97833 7.11178 7.76266 8.42754 9.25364 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.003322 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.478673 B = 8426.191502 C =10440.475017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.578 5.578 3 C 0.583 3.417 4 O -0.573 6.573 5 C -0.004 4.004 6 C -0.225 4.225 7 S 0.266 5.734 8 C 0.111 3.889 9 C -0.158 4.158 10 C -0.206 4.206 11 C -0.019 4.019 12 O -0.185 6.185 13 C 0.028 3.972 14 N -0.456 5.456 15 C 0.135 3.865 16 H 0.107 0.893 17 C -0.140 4.140 18 C 0.167 3.833 19 N -0.618 5.618 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.055 4.055 23 N -0.942 5.942 24 Si 0.975 3.025 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.130 3.870 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.200 0.800 33 H 0.179 0.821 34 H 0.248 0.752 35 H 0.214 0.786 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.248 0.752 41 H 0.038 0.962 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 25.678 -1.246 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.307 5.307 3 C 0.370 3.630 4 O -0.453 6.453 5 C -0.139 4.139 6 C -0.368 4.368 7 S 0.526 5.474 8 C -0.164 4.164 9 C -0.164 4.164 10 C -0.226 4.226 11 C -0.085 4.085 12 O -0.080 6.080 13 C -0.046 4.046 14 N -0.172 5.172 15 C 0.031 3.969 16 H 0.125 0.875 17 C -0.179 4.179 18 C 0.042 3.958 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.094 0.906 22 C -0.249 4.249 23 N -0.591 5.591 24 Si 0.804 3.196 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.217 0.783 33 H 0.197 0.803 34 H 0.264 0.736 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.117 26.049 -1.267 26.165 hybrid contribution 0.291 -1.987 0.439 2.056 sum -1.826 24.062 -0.828 24.145 Atomic orbital electron populations 1.22419 0.77603 1.03828 1.02270 1.47680 1.08318 1.04749 1.69953 1.17589 0.86123 0.83017 0.76280 1.90734 1.13810 1.87407 1.53398 1.19857 0.88862 0.94676 1.10497 1.26747 1.08112 0.96136 1.05789 1.83326 0.93236 1.07714 1.63138 1.25338 0.97559 0.90653 1.02877 1.19264 0.87862 0.95311 1.13920 1.23035 0.94079 0.96681 1.08842 1.24758 0.98203 0.82657 1.02853 1.83959 1.33399 1.20118 1.70572 1.24534 0.81609 0.98465 0.99973 1.67399 1.09572 1.23125 1.17124 1.22012 0.96830 0.82313 0.95762 0.87463 1.23210 0.99653 0.98379 0.96695 1.21605 0.92326 0.98048 0.83788 1.44701 1.43895 1.37676 1.08165 1.19354 1.07668 1.12517 0.97687 0.90646 1.25560 0.98642 1.02433 0.98245 1.70109 1.26770 1.45797 1.16400 0.85111 0.78514 0.78051 0.77923 1.21404 1.21973 1.19711 1.21679 0.91990 0.91026 0.94934 0.92956 0.91705 0.87715 0.78304 0.80344 0.73565 0.76922 0.90569 0.90115 0.92974 0.96303 0.94231 0.94420 0.96203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.96 7.72 127.77 0.99 3.95 16 2 N -0.58 -21.52 2.82 -819.97 -2.31 -23.83 16 3 C 0.58 20.97 7.64 86.62 0.66 21.63 16 4 O -0.57 -22.61 16.04 -4.14 -0.07 -22.67 16 5 C 0.00 -0.11 6.45 40.66 0.26 0.15 16 6 C -0.23 -5.14 10.56 67.09 0.71 -4.43 16 7 S 0.27 4.26 23.07 -56.49 -1.30 2.96 16 8 C 0.11 2.45 7.46 87.53 0.65 3.10 16 9 C -0.16 -3.04 6.32 -18.98 -0.12 -3.16 16 10 C -0.21 -2.57 11.04 23.63 0.26 -2.31 16 11 C -0.02 -0.20 12.04 66.92 0.81 0.61 16 12 O -0.19 -3.15 10.54 1.68 0.02 -3.14 16 13 C 0.03 0.55 12.05 67.31 0.81 1.36 16 14 N -0.46 -12.71 6.63 -179.56 -1.19 -13.90 16 15 C 0.13 5.26 3.58 46.18 0.17 5.43 16 16 H 0.11 4.08 6.99 -2.38 -0.02 4.06 16 17 C -0.14 -5.54 6.53 31.99 0.21 -5.33 16 18 C 0.17 8.15 4.70 86.86 0.41 8.56 16 19 N -0.62 -31.88 2.97 -691.97 -2.06 -33.93 16 20 C -0.24 -13.66 10.26 84.04 0.86 -12.80 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.06 -3.09 5.49 84.87 0.47 -2.63 16 23 N -0.94 -55.11 10.32 21.65 0.22 -54.89 16 24 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.13 5.72 6.29 86.73 0.55 6.27 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.82 4.77 -2.39 -0.01 2.81 16 31 H 0.11 3.57 5.21 -2.38 -0.01 3.56 16 32 H 0.20 4.03 8.00 -2.91 -0.02 4.01 16 33 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 35 H 0.21 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 37 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 38 H 0.05 2.90 6.43 -2.39 -0.02 2.89 16 39 H 0.02 0.97 5.55 -2.39 -0.01 0.96 16 40 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 Total: -1.00 -71.18 359.28 4.09 -67.09 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.07 Total: 14.43 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.69 Total: 20.40 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.34 Total: -126.55 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.30 Total: 2.96 kcal Total: -71.18 4.09 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033510618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.232 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds