Wall clock time and date at job start Wed Apr 1 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99619 * 2 1 4 4 O 1.21548 * 119.99762 * 177.18767 * 3 2 1 5 5 C 1.47871 * 120.00014 * 357.18885 * 3 2 1 6 6 N 1.32468 * 119.75463 * 6.46700 * 5 3 2 7 7 C 1.31756 * 121.98429 * 180.02562 * 6 5 3 8 8 C 1.37676 * 121.49422 * 359.97438 * 7 6 5 9 9 C 1.41118 * 119.38816 * 0.02562 * 8 7 6 10 10 C 1.44980 * 130.46405 * 180.02562 * 9 8 7 11 11 C 1.31995 * 114.84773 * 179.97438 * 10 9 8 12 12 S 1.75351 * 111.45752 * 359.97438 * 11 10 9 13 13 C 1.40260 * 117.63646 * 359.73245 * 9 8 7 14 14 C 1.46500 * 119.99997 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.88450 * 183.88218 * 14 2 1 16 16 C 1.54904 * 111.00672 * 307.80548 * 14 2 1 17 17 N 1.47426 * 104.83221 * 155.08036 * 16 14 2 18 18 C 1.36939 * 125.64772 * 155.91268 * 17 16 14 19 19 H 1.08002 * 119.99749 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99746 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00562 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47377 * 119.99795 * 22 20 18 25 25 H 1.48505 * 109.47249 * 239.99980 * 22 20 18 26 26 C 1.47483 * 108.75905 * 335.90016 * 17 16 14 27 27 C 1.54328 * 107.03631 * 1.01564 * 26 17 16 28 28 H 1.08998 * 110.72319 * 263.79439 * 27 26 17 29 29 O 1.42897 * 110.71626 * 140.69595 * 27 26 17 30 30 H 1.09002 * 109.47574 * 276.13634 * 1 2 3 31 31 H 1.09004 * 109.47256 * 36.13945 * 1 2 3 32 32 H 1.09003 * 109.47068 * 156.13349 * 1 2 3 33 33 H 1.08005 * 119.25108 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.30717 * 179.97438 * 8 7 6 35 35 H 1.08001 * 122.57474 * 0.02676 * 10 9 8 36 36 H 1.08001 * 124.27685 * 180.02562 * 11 10 9 37 37 H 1.08994 * 110.36979 * 273.92703 * 16 14 2 38 38 H 1.09009 * 110.36619 * 36.13517 * 16 14 2 39 39 H 0.97000 * 120.00277 * 180.02562 * 21 20 18 40 40 H 1.09008 * 110.02917 * 241.66215 * 26 17 16 41 41 H 1.08995 * 109.96874 * 120.34895 * 26 17 16 42 42 H 0.96704 * 114.00303 * 63.84286 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3532 1.1679 0.0516 5 6 1.4008 2.4471 -0.0628 6 7 0.0781 2.4474 0.0106 7 6 -0.6234 3.5615 -0.0413 8 6 -0.0147 4.7892 -0.1747 9 6 1.3922 4.8591 -0.2585 10 6 2.2706 6.0039 -0.3997 11 6 3.5573 5.7131 -0.4472 12 16 3.8296 3.9855 -0.3217 13 6 2.1084 3.6549 -0.1948 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0972 0.0694 16 6 1.7075 -2.1923 1.1435 17 7 2.0265 -3.5578 0.6884 18 6 2.2161 -4.6453 1.4987 19 1 2.1351 -4.5407 2.5706 20 6 2.5134 -5.8818 0.9425 21 7 2.6126 -6.0092 -0.3638 22 14 2.7727 -7.3652 2.0479 23 1 2.6080 -6.9598 3.4669 24 1 1.7750 -8.4127 1.7128 25 1 4.1420 -7.9021 1.8427 26 6 2.1076 -3.5600 -0.7842 27 6 1.8484 -2.1129 -1.2536 28 1 0.8027 -1.9785 -1.5300 29 8 2.7057 -1.7744 -2.3455 30 1 -0.3634 0.1099 1.0218 31 1 -0.3634 0.8299 -0.6061 32 1 -0.3633 -0.9398 -0.4158 33 1 -1.7003 3.5105 0.0231 34 1 -0.6086 5.6903 -0.2156 35 1 1.9006 7.0167 -0.4604 36 1 4.3432 6.4468 -0.5496 37 1 2.2390 -1.9667 2.0679 38 1 0.6328 -2.0801 1.2877 39 1 2.8200 -6.8734 -0.7525 40 1 1.3502 -4.2254 -1.1989 41 1 3.0996 -3.8808 -1.1019 42 1 2.5536 -2.3003 -3.1427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047415521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:27 Heat of formation + Delta-G solvation = 37.357251 kcal Electronic energy + Delta-G solvation = -28098.524171 eV Core-core repulsion = 24172.384004 eV Total energy + Delta-G solvation = -3926.140166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95971 -39.42714 -37.75692 -36.36506 -35.16737 -34.69310 -32.17909 -31.47410 -30.61997 -28.55874 -27.30811 -26.66746 -25.05121 -24.57607 -23.92443 -21.76046 -20.70891 -20.40388 -19.21925 -18.20933 -17.45197 -17.05105 -16.73158 -16.56451 -15.90538 -15.50884 -15.26934 -15.00653 -14.69774 -14.40460 -14.15847 -14.01896 -13.89421 -13.08948 -13.00900 -12.79131 -12.66891 -12.50373 -12.29192 -12.15508 -12.05312 -11.88272 -11.36363 -11.19954 -11.01006 -10.84707 -10.78593 -10.18266 -10.10150 -10.05352 -9.92778 -9.81678 -9.47307 -9.34365 -9.22633 -8.70004 -8.33549 -8.01881 -6.90792 -5.75361 -3.10369 0.11499 0.52442 1.24979 1.80696 1.83954 2.77024 3.00333 3.39322 3.44973 3.47412 3.59170 3.94223 4.12901 4.34235 4.46296 4.54093 4.71375 4.86600 5.00081 5.07233 5.15287 5.28570 5.43465 5.44989 5.48093 5.59074 5.68223 5.71025 5.87762 5.90510 5.92025 6.03503 6.09370 6.14891 6.36673 6.53692 6.65279 6.89565 7.36347 7.39515 7.48512 7.58495 7.74493 8.16157 8.22390 8.23608 9.14667 9.75236 10.38487 11.36219 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002637 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.762406 B =10615.948727 C =10981.747735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.573 5.573 3 C 0.561 3.439 4 O -0.525 6.525 5 C 0.141 3.859 6 N -0.434 5.434 7 C 0.074 3.926 8 C -0.111 4.111 9 C -0.046 4.046 10 C -0.133 4.133 11 C -0.203 4.203 12 S 0.199 5.801 13 C -0.165 4.165 14 C 0.131 3.869 15 H 0.116 0.884 16 C 0.134 3.866 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.154 3.846 27 C 0.065 3.935 28 H 0.057 0.943 29 O -0.561 6.561 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.048 0.952 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 25.052 -2.763 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.303 5.303 3 C 0.347 3.653 4 O -0.402 6.402 5 C -0.009 4.009 6 N -0.147 5.147 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.062 4.062 10 C -0.163 4.163 11 C -0.338 4.338 12 S 0.463 5.537 13 C -0.285 4.285 14 C 0.027 3.973 15 H 0.134 0.866 16 C 0.007 3.993 17 N -0.328 5.328 18 C -0.356 4.356 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.005 3.995 28 H 0.075 0.925 29 O -0.366 6.366 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.189 0.811 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.453 23.598 -2.231 24.118 hybrid contribution -1.167 0.467 0.012 1.257 sum -5.620 24.065 -2.218 24.812 Atomic orbital electron populations 1.22438 0.78354 1.03479 1.02968 1.47583 1.07870 1.05075 1.69786 1.17743 0.86644 0.82864 0.78030 1.90777 1.12646 1.86155 1.50625 1.20708 0.89515 0.91792 0.98840 1.68195 1.05672 1.29790 1.11034 1.22662 1.00750 0.87220 0.97330 1.22092 0.92480 0.99931 0.98772 1.19513 0.94339 0.91620 1.00708 1.20751 0.91863 0.98454 1.05272 1.25802 1.00460 1.02477 1.05095 1.85210 0.99328 0.96020 1.73108 1.23665 1.00303 0.96836 1.07654 1.22494 0.98492 0.81074 0.95222 0.86637 1.21753 0.97583 0.85367 0.94642 1.44358 1.83341 1.03201 1.01864 1.19124 1.41286 0.85781 0.89435 0.90083 1.24821 1.01707 0.97760 0.96085 1.69941 1.54925 1.23392 1.08729 0.85997 0.77457 0.82587 0.79421 1.20429 1.21718 1.21673 1.21925 1.01918 0.89050 0.84276 1.23582 0.92208 0.97235 0.86519 0.92535 1.86492 1.62234 1.63758 1.24089 0.92374 0.87577 0.91760 0.81504 0.83948 0.83457 0.81098 0.93329 0.95400 0.93691 0.93306 0.92095 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 7.94 59.85 0.48 1.46 16 2 N -0.57 -9.95 2.91 -172.58 -0.50 -10.45 16 3 C 0.56 9.99 7.65 -12.32 -0.09 9.90 16 4 O -0.53 -10.66 14.44 5.32 0.08 -10.58 16 5 C 0.14 2.08 6.66 -82.76 -0.55 1.53 16 6 N -0.43 -5.32 5.98 -9.78 -0.06 -5.38 16 7 C 0.07 0.65 11.12 -17.79 -0.20 0.46 16 8 C -0.11 -0.90 10.18 -38.69 -0.39 -1.29 16 9 C -0.05 -0.48 6.10 -105.38 -0.64 -1.12 16 10 C -0.13 -1.10 10.39 -38.83 -0.40 -1.50 16 11 C -0.20 -1.72 11.02 28.82 0.32 -1.41 16 12 S 0.20 2.47 21.46 -107.50 -2.31 0.16 16 13 C -0.17 -2.21 6.33 -37.93 -0.24 -2.45 16 14 C 0.13 2.64 3.17 -65.79 -0.21 2.43 16 15 H 0.12 2.65 7.01 -51.93 -0.36 2.28 16 16 C 0.13 2.88 6.79 -2.53 -0.02 2.86 16 17 N -0.60 -15.47 3.41 -169.70 -0.58 -16.05 16 18 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.15 3.74 5.17 -2.81 -0.01 3.73 16 27 C 0.06 1.30 3.86 -24.90 -0.10 1.20 16 28 H 0.06 1.03 6.47 -51.93 -0.34 0.70 16 29 O -0.56 -10.81 13.39 -35.23 -0.47 -11.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.11 1.36 5.17 -53.14 -0.27 1.09 16 32 H 0.06 0.90 6.36 -51.93 -0.33 0.57 16 33 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.57 6.94 -51.92 -0.36 0.21 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.05 1.27 7.51 -51.92 -0.39 0.88 16 41 H 0.06 1.67 7.31 -51.93 -0.38 1.29 16 42 H 0.37 5.58 9.12 45.56 0.42 6.00 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -34.51 355.45 -9.35 -43.86 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.10 Total: 4.64 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.32 Total: 8.95 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.57 Total: -58.22 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.39 Total: -21.86 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.31 Total: 0.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.51 -9.35 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047415521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.220 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds