Wall clock time and date at job start Wed Apr 1 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99619 * 2 1 4 4 O 1.21548 * 119.99762 * 177.18767 * 3 2 1 5 5 C 1.47871 * 120.00014 * 357.18885 * 3 2 1 6 6 N 1.32468 * 119.75463 * 6.46700 * 5 3 2 7 7 C 1.31756 * 121.98429 * 180.02562 * 6 5 3 8 8 C 1.37676 * 121.49422 * 359.97438 * 7 6 5 9 9 C 1.41118 * 119.38816 * 0.02562 * 8 7 6 10 10 C 1.44980 * 130.46405 * 180.02562 * 9 8 7 11 11 C 1.31995 * 114.84773 * 179.97438 * 10 9 8 12 12 S 1.75351 * 111.45752 * 359.97438 * 11 10 9 13 13 C 1.40260 * 117.63646 * 359.73245 * 9 8 7 14 14 C 1.46500 * 119.99997 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.88450 * 183.88218 * 14 2 1 16 16 C 1.54904 * 111.00672 * 307.80548 * 14 2 1 17 17 N 1.47426 * 104.83221 * 155.08036 * 16 14 2 18 18 C 1.36939 * 125.64772 * 155.91268 * 17 16 14 19 19 H 1.08002 * 119.99749 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99746 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00562 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47377 * 119.99795 * 22 20 18 25 25 H 1.48505 * 109.47249 * 239.99980 * 22 20 18 26 26 C 1.47483 * 108.75905 * 335.90016 * 17 16 14 27 27 C 1.54328 * 107.03631 * 1.01564 * 26 17 16 28 28 H 1.08998 * 110.72319 * 263.79439 * 27 26 17 29 29 O 1.42897 * 110.71626 * 140.69595 * 27 26 17 30 30 H 1.09002 * 109.47574 * 276.13634 * 1 2 3 31 31 H 1.09004 * 109.47256 * 36.13945 * 1 2 3 32 32 H 1.09003 * 109.47068 * 156.13349 * 1 2 3 33 33 H 1.08005 * 119.25108 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.30717 * 179.97438 * 8 7 6 35 35 H 1.08001 * 122.57474 * 0.02676 * 10 9 8 36 36 H 1.08001 * 124.27685 * 180.02562 * 11 10 9 37 37 H 1.08994 * 110.36979 * 273.92703 * 16 14 2 38 38 H 1.09009 * 110.36619 * 36.13517 * 16 14 2 39 39 H 0.97000 * 120.00277 * 180.02562 * 21 20 18 40 40 H 1.09008 * 110.02917 * 241.66215 * 26 17 16 41 41 H 1.08995 * 109.96874 * 120.34895 * 26 17 16 42 42 H 0.96704 * 114.00303 * 63.84286 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3532 1.1679 0.0516 5 6 1.4008 2.4471 -0.0628 6 7 0.0781 2.4474 0.0106 7 6 -0.6234 3.5615 -0.0413 8 6 -0.0147 4.7892 -0.1747 9 6 1.3922 4.8591 -0.2585 10 6 2.2706 6.0039 -0.3997 11 6 3.5573 5.7131 -0.4472 12 16 3.8296 3.9855 -0.3217 13 6 2.1084 3.6549 -0.1948 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0972 0.0694 16 6 1.7075 -2.1923 1.1435 17 7 2.0265 -3.5578 0.6884 18 6 2.2161 -4.6453 1.4987 19 1 2.1351 -4.5407 2.5706 20 6 2.5134 -5.8818 0.9425 21 7 2.6126 -6.0092 -0.3638 22 14 2.7727 -7.3652 2.0479 23 1 2.6080 -6.9598 3.4669 24 1 1.7750 -8.4127 1.7128 25 1 4.1420 -7.9021 1.8427 26 6 2.1076 -3.5600 -0.7842 27 6 1.8484 -2.1129 -1.2536 28 1 0.8027 -1.9785 -1.5300 29 8 2.7057 -1.7744 -2.3455 30 1 -0.3634 0.1099 1.0218 31 1 -0.3634 0.8299 -0.6061 32 1 -0.3633 -0.9398 -0.4158 33 1 -1.7003 3.5105 0.0231 34 1 -0.6086 5.6903 -0.2156 35 1 1.9006 7.0167 -0.4604 36 1 4.3432 6.4468 -0.5496 37 1 2.2390 -1.9667 2.0679 38 1 0.6328 -2.0801 1.2877 39 1 2.8200 -6.8734 -0.7525 40 1 1.3502 -4.2254 -1.1989 41 1 3.0996 -3.8808 -1.1019 42 1 2.5536 -2.3003 -3.1427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047415521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:27 Heat of formation + Delta-G solvation = 12.203050 kcal Electronic energy + Delta-G solvation = -28099.614939 eV Core-core repulsion = 24172.384004 eV Total energy + Delta-G solvation = -3927.230934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96803 -40.68818 -39.33251 -37.17803 -36.75422 -36.28179 -33.90624 -32.59867 -31.39891 -30.37150 -29.05814 -27.91412 -26.65798 -25.36402 -25.29167 -22.72001 -22.33025 -21.82275 -20.63039 -19.10103 -19.01617 -18.76895 -17.95074 -17.61626 -17.35652 -16.74200 -16.60207 -16.12735 -15.87304 -15.74472 -15.44967 -15.13057 -15.03935 -14.65603 -14.53140 -14.24019 -14.02893 -13.79454 -13.62633 -13.27283 -13.20138 -13.05624 -12.91419 -12.88739 -12.77115 -12.65284 -12.05312 -11.93951 -11.86420 -11.66138 -11.22640 -10.95785 -10.91425 -10.80201 -10.37200 -10.18730 -9.72513 -8.99663 -8.89707 -7.89561 -5.27802 -0.69750 -0.28698 0.42248 1.06343 1.11598 1.45411 1.47266 1.57363 1.69183 1.73616 2.46431 2.68472 2.94290 3.10471 3.31766 3.47919 3.53824 3.57207 3.74896 3.80064 3.98401 4.04654 4.13939 4.28045 4.37786 4.42040 4.45173 4.46500 4.59095 4.74442 4.80730 4.84131 4.96645 5.04273 5.17380 5.27298 5.33933 5.39761 5.43336 5.59582 5.62615 6.09522 6.22107 6.60044 6.80354 6.94464 7.01458 7.65935 8.29433 9.20633 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002637 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.762406 B =10615.948727 C =10981.747735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.576 5.576 3 C 0.553 3.447 4 O -0.565 6.565 5 C 0.106 3.894 6 N -0.441 5.441 7 C 0.072 3.928 8 C -0.083 4.083 9 C -0.057 4.057 10 C -0.123 4.123 11 C -0.190 4.190 12 S 0.110 5.890 13 C -0.180 4.180 14 C 0.143 3.857 15 H 0.080 0.920 16 C 0.137 3.863 17 N -0.621 5.621 18 C -0.245 4.245 19 H 0.086 0.914 20 C -0.063 4.063 21 N -0.950 5.950 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.294 1.294 26 C 0.166 3.834 27 C 0.084 3.916 28 H 0.084 0.916 29 O -0.572 6.572 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.211 0.789 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.203 0.797 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.021 0.979 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 28.491 -2.455 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.305 5.305 3 C 0.341 3.659 4 O -0.444 6.444 5 C -0.042 4.042 6 N -0.154 5.154 7 C -0.083 4.083 8 C -0.104 4.104 9 C -0.073 4.073 10 C -0.152 4.152 11 C -0.324 4.324 12 S 0.374 5.626 13 C -0.299 4.299 14 C 0.038 3.962 15 H 0.098 0.902 16 C 0.011 3.989 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.104 0.896 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.040 3.960 27 C 0.024 3.976 28 H 0.102 0.898 29 O -0.379 6.379 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.227 0.773 34 H 0.209 0.791 35 H 0.208 0.792 36 H 0.220 0.780 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.477 27.073 -1.924 28.152 hybrid contribution -0.330 -0.405 -0.091 0.530 sum -7.806 26.668 -2.015 27.860 Atomic orbital electron populations 1.22628 0.76127 1.04210 1.03965 1.47600 1.09003 1.03850 1.70081 1.18364 0.86552 0.84035 0.76957 1.90747 1.14514 1.86980 1.52144 1.20140 0.90553 0.90409 1.03074 1.68026 1.04504 1.31927 1.10919 1.23448 1.02419 0.86532 0.95946 1.22683 0.91543 1.01507 0.94692 1.20062 0.95699 0.91086 1.00435 1.21181 0.91137 0.99502 1.03331 1.26003 1.01793 0.99559 1.05079 1.85451 1.01199 1.00905 1.75087 1.23779 1.00055 0.97707 1.08405 1.22001 0.96963 0.82503 0.94758 0.90200 1.21822 0.98542 0.83733 0.94788 1.44622 1.83419 1.04399 1.02436 1.19502 1.41031 0.86760 0.90089 0.89646 1.25693 1.01873 1.00539 0.97529 1.70147 1.55746 1.23649 1.10282 0.84946 0.76806 0.78854 0.78300 1.18961 1.21398 1.22075 1.21658 0.98901 0.91511 0.83881 1.23334 0.93532 0.94074 0.86685 0.89845 1.86466 1.62486 1.64124 1.24800 0.91449 0.85908 0.91686 0.77264 0.79077 0.79189 0.78005 0.93989 0.93157 0.94153 0.95399 0.96104 0.75781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 7.94 127.77 1.01 2.94 16 2 N -0.58 -20.35 2.91 -818.19 -2.38 -22.73 16 3 C 0.55 20.54 7.65 86.79 0.66 21.20 16 4 O -0.56 -24.73 14.44 -3.87 -0.06 -24.78 16 5 C 0.11 3.10 6.66 42.18 0.28 3.38 16 6 N -0.44 -9.81 5.98 -184.87 -1.10 -10.92 16 7 C 0.07 0.94 11.12 84.57 0.94 1.88 16 8 C -0.08 -0.90 10.18 22.84 0.23 -0.67 16 9 C -0.06 -1.00 6.10 -20.35 -0.12 -1.12 16 10 C -0.12 -1.54 10.39 23.09 0.24 -1.30 16 11 C -0.19 -2.83 11.02 66.92 0.74 -2.09 16 12 S 0.11 2.86 21.46 -56.49 -1.21 1.65 16 13 C -0.18 -4.76 6.33 23.34 0.15 -4.61 16 14 C 0.14 6.00 3.17 46.38 0.15 6.15 16 15 H 0.08 3.94 7.01 -2.39 -0.02 3.92 16 16 C 0.14 6.06 6.79 86.85 0.59 6.65 16 17 N -0.62 -33.11 3.41 -690.81 -2.35 -35.47 16 18 C -0.25 -14.04 10.28 84.03 0.86 -13.18 16 19 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 20 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 21 N -0.95 -57.35 10.31 21.65 0.22 -57.13 16 22 Si 0.98 46.29 29.55 68.60 2.03 48.31 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 C 0.17 8.46 5.17 86.64 0.45 8.91 16 27 C 0.08 3.45 3.86 31.78 0.12 3.57 16 28 H 0.08 2.99 6.47 -2.39 -0.02 2.98 16 29 O -0.57 -22.65 13.39 -148.98 -1.99 -24.65 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 2.92 5.17 -4.79 -0.02 2.89 16 32 H 0.06 1.71 6.36 -2.39 -0.02 1.70 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 35 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 2.02 6.94 -2.38 -0.02 2.00 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.03 1.51 7.51 -2.38 -0.02 1.50 16 41 H 0.02 1.21 7.31 -2.39 -0.02 1.19 16 42 H 0.39 11.94 9.12 -74.05 -0.68 11.27 16 Total: -1.00 -81.57 355.45 0.32 -81.26 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.40 Total: 15.92 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 6.77 Total: 28.54 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.61 Total: -126.25 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.05 Total: -49.43 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.21 Total: 1.65 kcal Total: -81.57 0.32 -81.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047415521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.460 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds