Wall clock time and date at job start Wed Apr 1 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 119.99610 * 2 1 4 4 O 1.21580 * 120.00161 * 184.92359 * 3 2 1 5 5 C 1.47664 * 120.00104 * 4.92830 * 3 2 1 6 6 C 1.40155 * 119.85319 * 320.42251 * 5 3 2 7 7 C 1.36224 * 120.07700 * 180.02562 * 6 5 3 8 8 C 1.39580 * 120.43289 * 0.02562 * 7 6 5 9 9 S 1.76147 * 131.53053 * 179.97438 * 8 7 6 10 10 C 1.70631 * 90.85527 * 180.02562 * 9 8 7 11 11 N 1.27846 * 111.59129 * 359.97438 * 10 9 8 12 12 C 1.34757 * 117.83649 * 359.74324 * 11 10 9 13 13 C 1.38722 * 119.85443 * 140.44929 * 5 3 2 14 14 C 1.46495 * 120.00212 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.88640 * 180.70593 * 14 2 1 16 16 C 1.54910 * 111.00264 * 304.58142 * 14 2 1 17 17 N 1.47425 * 104.83375 * 155.08717 * 16 14 2 18 18 C 1.36933 * 125.64859 * 155.83691 * 17 16 14 19 19 H 1.08001 * 120.00296 * 354.24457 * 18 17 16 20 20 C 1.38817 * 119.99626 * 174.24560 * 18 17 16 21 21 N 1.31618 * 120.00270 * 6.22577 * 20 18 17 22 22 Si 1.86807 * 119.99801 * 186.22436 * 20 18 17 23 23 H 1.48501 * 109.47014 * 94.98862 * 22 20 18 24 24 H 1.48497 * 109.46785 * 214.98835 * 22 20 18 25 25 H 1.48503 * 109.47081 * 334.98853 * 22 20 18 26 26 C 1.47022 * 108.70109 * 335.87077 * 17 16 14 27 27 C 1.54371 * 107.28701 * 1.09214 * 26 17 16 28 28 H 1.08996 * 110.70589 * 263.79446 * 27 26 17 29 29 O 1.42903 * 110.75236 * 140.50578 * 27 26 17 30 30 H 1.09006 * 109.46909 * 85.49694 * 1 2 3 31 31 H 1.08997 * 109.46996 * 205.48929 * 1 2 3 32 32 H 1.08991 * 109.47245 * 325.49572 * 1 2 3 33 33 H 1.08001 * 119.96195 * 0.02562 * 6 5 3 34 34 H 1.08000 * 119.78049 * 179.97438 * 7 6 5 35 35 H 1.08000 * 124.20267 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.97725 * 359.97253 * 13 5 3 37 37 H 1.09003 * 110.36473 * 273.92510 * 16 14 2 38 38 H 1.08996 * 110.37186 * 36.13487 * 16 14 2 39 39 H 0.97000 * 120.00134 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.88261 * 120.47605 * 26 17 16 41 41 H 1.09002 * 109.88414 * 241.64327 * 26 17 16 42 42 H 0.96704 * 113.99968 * 66.48826 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3513 1.1693 -0.0904 5 6 1.4045 2.4436 0.1099 6 6 0.1901 2.6106 -0.5696 7 6 -0.4908 3.7864 -0.4719 8 6 0.0127 4.8327 0.3027 9 16 -0.6096 6.4478 0.6301 10 6 0.7378 6.7944 1.6180 11 7 1.5430 5.8034 1.6800 12 6 1.2218 4.6878 0.9958 13 6 1.9200 3.4724 0.8847 14 6 2.1975 -1.2687 -0.0006 15 1 3.2738 -1.0960 0.0121 16 6 1.7643 -2.1604 1.1897 17 7 2.0618 -3.5380 0.7571 18 6 2.2928 -4.6027 1.5866 19 1 2.3571 -4.4517 2.6541 20 6 2.4444 -5.8763 1.0554 21 7 2.4887 -6.0442 -0.2493 22 14 2.5854 -7.3518 2.1924 23 1 1.2468 -7.9697 2.3698 24 1 3.5152 -8.3463 1.5995 25 1 3.1064 -6.9120 3.5117 26 6 2.0702 -3.5791 -0.7126 27 6 1.7892 -2.1462 -1.2132 28 1 0.7313 -2.0186 -1.4426 29 8 2.5956 -1.8406 -2.3527 30 1 -0.3633 0.0807 -1.0246 31 1 -0.3633 -0.9276 0.4422 32 1 -0.3633 0.8468 0.5821 33 1 -0.2063 1.8061 -1.1713 34 1 -1.4260 3.9100 -0.9978 35 1 0.8908 7.7340 2.1281 36 1 2.8562 3.3382 1.4061 37 1 2.3402 -1.9099 2.0807 38 1 0.6980 -2.0437 1.3829 39 1 2.5943 -6.9342 -0.6204 40 1 3.0455 -3.9109 -1.0686 41 1 1.2934 -4.2557 -1.0690 42 1 2.3803 -2.3621 -3.1381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047582787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:44 Heat of formation + Delta-G solvation = 29.741431 kcal Electronic energy + Delta-G solvation = -27741.013273 eV Core-core repulsion = 23814.542860 eV Total energy + Delta-G solvation = -3926.470413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02062 -39.84417 -38.01526 -36.87052 -35.29853 -34.82679 -32.08423 -31.50353 -30.47632 -28.52845 -27.41674 -26.93461 -25.44134 -24.72074 -23.66197 -22.33430 -20.59931 -20.44214 -19.36415 -18.67591 -17.62881 -17.15899 -16.87205 -16.49891 -16.17686 -15.88183 -15.30289 -14.94649 -14.78768 -14.55138 -14.27012 -14.06789 -14.00920 -13.43380 -13.30747 -13.02066 -12.72592 -12.63822 -12.35055 -12.27463 -12.04453 -11.66655 -11.47979 -11.42749 -11.26342 -10.88579 -10.84214 -10.51346 -10.17549 -10.07535 -9.97817 -9.87900 -9.84125 -9.32387 -9.10350 -8.74329 -8.55955 -8.39850 -6.95184 -5.80824 -3.15560 0.01363 0.50010 0.83029 1.28859 1.90544 2.67499 2.91532 3.36394 3.40756 3.41964 3.44078 3.64643 4.18499 4.31326 4.42577 4.60074 4.66224 4.76963 4.82934 5.01781 5.10779 5.16685 5.36465 5.41281 5.48588 5.54809 5.58335 5.67042 5.69140 5.70540 5.79623 5.89465 6.00368 6.09914 6.18007 6.42599 6.53010 6.81484 7.16305 7.32794 7.41160 7.47118 7.70470 8.12394 8.16953 8.19330 9.10333 9.70582 10.33672 11.30838 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.002253 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.541137 B =12426.990541 C =12741.741146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.592 5.592 3 C 0.560 3.440 4 O -0.524 6.524 5 C -0.108 4.108 6 C -0.076 4.076 7 C -0.078 4.078 8 C -0.165 4.165 9 S 0.098 5.902 10 C 0.065 3.935 11 N -0.457 5.457 12 C 0.070 3.930 13 C -0.004 4.004 14 C 0.133 3.867 15 H 0.117 0.883 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.152 3.848 27 C 0.066 3.934 28 H 0.056 0.944 29 O -0.560 6.560 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.205 0.795 36 H 0.146 0.854 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 23.656 -1.580 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.324 5.324 3 C 0.347 3.653 4 O -0.401 6.401 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.101 4.101 8 C -0.284 4.284 9 S 0.352 5.648 10 C -0.241 4.241 11 N -0.169 5.169 12 C -0.049 4.049 13 C -0.026 4.026 14 C 0.029 3.971 15 H 0.135 0.865 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.026 3.974 27 C 0.006 3.994 28 H 0.074 0.926 29 O -0.364 6.364 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.222 0.778 36 H 0.164 0.836 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.545 24.537 -1.135 26.731 hybrid contribution 0.175 -1.878 0.137 1.892 sum -10.369 22.658 -0.997 24.938 Atomic orbital electron populations 1.22205 0.79987 1.04224 1.01458 1.47601 1.06831 1.05684 1.72234 1.18072 0.87041 0.83167 0.77042 1.90828 1.13431 1.86877 1.48927 1.19745 0.96172 0.94900 1.00574 1.21396 0.92989 0.97563 0.97822 1.19992 1.00625 0.90988 0.98472 1.24070 0.99884 0.99385 1.05073 1.84025 1.26408 1.06781 1.47632 1.28112 0.93390 1.01707 1.00877 1.66209 1.30741 0.99417 1.20509 1.19054 0.93790 0.93982 0.98111 1.20675 0.98380 0.88137 0.95378 1.22461 0.98528 0.80846 0.95237 0.86544 1.21787 0.97745 0.85618 0.94457 1.44233 1.83383 1.03306 1.01687 1.19077 1.42765 0.84751 0.89382 0.90103 1.24843 1.01710 0.97523 0.96103 1.69945 1.55986 1.21406 1.09401 0.86063 0.77430 0.82466 0.79599 1.21533 1.21668 1.20511 1.21863 1.01857 0.89428 0.84205 1.23544 0.92791 0.97324 0.85777 0.92607 1.86513 1.62371 1.65512 1.22044 0.92269 0.89645 0.90639 0.83226 0.84464 0.77806 0.83587 0.93285 0.95479 0.93593 0.92476 0.93046 0.77973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 7.64 59.85 0.46 1.15 16 2 N -0.59 -9.01 2.91 -172.66 -0.50 -9.51 16 3 C 0.56 9.01 7.33 -12.41 -0.09 8.92 16 4 O -0.52 -10.59 16.28 5.29 0.09 -10.51 16 5 C -0.11 -1.37 5.21 -105.15 -0.55 -1.91 16 6 C -0.08 -0.72 7.49 -39.59 -0.30 -1.02 16 7 C -0.08 -0.66 9.99 -39.81 -0.40 -1.06 16 8 C -0.16 -1.62 6.56 -38.37 -0.25 -1.87 16 9 S 0.10 0.69 23.17 -107.50 -2.49 -1.80 16 10 C 0.06 0.49 12.09 51.10 0.62 1.11 16 11 N -0.46 -5.19 10.57 -13.02 -0.14 -5.33 16 12 C 0.07 0.84 6.99 -84.98 -0.59 0.24 16 13 C 0.00 -0.05 9.67 -38.51 -0.37 -0.43 16 14 C 0.13 2.51 3.17 -65.79 -0.21 2.30 16 15 H 0.12 2.57 7.02 -51.93 -0.36 2.20 16 16 C 0.13 2.66 6.78 -2.53 -0.02 2.64 16 17 N -0.60 -14.93 3.39 -170.04 -0.58 -15.50 16 18 C -0.23 -6.33 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 20 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 21 N -0.92 -26.39 10.36 55.49 0.57 -25.82 16 22 Si 0.91 21.74 29.56 -169.99 -5.02 16.72 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.57 5.15 -3.04 -0.02 3.56 16 27 C 0.07 1.24 3.91 -24.87 -0.10 1.14 16 28 H 0.06 0.92 7.21 -51.93 -0.37 0.55 16 29 O -0.56 -10.24 13.39 -35.23 -0.47 -10.71 16 30 H 0.06 0.52 6.87 -51.93 -0.36 0.17 16 31 H 0.08 0.97 6.15 -51.93 -0.32 0.65 16 32 H 0.08 0.67 5.82 -51.93 -0.30 0.37 16 33 H 0.15 1.15 5.30 -52.49 -0.28 0.88 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.15 1.94 8.04 -52.49 -0.42 1.52 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.51 6.13 -51.93 -0.32 0.19 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 41 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 42 H 0.37 5.21 9.12 45.56 0.42 5.62 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -35.10 355.58 -9.15 -44.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.90 Total: 4.81 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.06 Total: 8.04 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.64 Total: -56.16 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.39 Total: -21.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.10 -9.15 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047582787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.993 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds