Wall clock time and date at job start Wed Apr 1 2020 04:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 119.99610 * 2 1 4 4 O 1.21580 * 120.00161 * 184.92359 * 3 2 1 5 5 C 1.47664 * 120.00104 * 4.92830 * 3 2 1 6 6 C 1.40155 * 119.85319 * 320.42251 * 5 3 2 7 7 C 1.36224 * 120.07700 * 180.02562 * 6 5 3 8 8 C 1.39580 * 120.43289 * 0.02562 * 7 6 5 9 9 S 1.76147 * 131.53053 * 179.97438 * 8 7 6 10 10 C 1.70631 * 90.85527 * 180.02562 * 9 8 7 11 11 N 1.27846 * 111.59129 * 359.97438 * 10 9 8 12 12 C 1.34757 * 117.83649 * 359.74324 * 11 10 9 13 13 C 1.38722 * 119.85443 * 140.44929 * 5 3 2 14 14 C 1.46495 * 120.00212 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.88640 * 180.70593 * 14 2 1 16 16 C 1.54910 * 111.00264 * 304.58142 * 14 2 1 17 17 N 1.47425 * 104.83375 * 155.08717 * 16 14 2 18 18 C 1.36933 * 125.64859 * 155.83691 * 17 16 14 19 19 H 1.08001 * 120.00296 * 354.24457 * 18 17 16 20 20 C 1.38817 * 119.99626 * 174.24560 * 18 17 16 21 21 N 1.31618 * 120.00270 * 6.22577 * 20 18 17 22 22 Si 1.86807 * 119.99801 * 186.22436 * 20 18 17 23 23 H 1.48501 * 109.47014 * 94.98862 * 22 20 18 24 24 H 1.48497 * 109.46785 * 214.98835 * 22 20 18 25 25 H 1.48503 * 109.47081 * 334.98853 * 22 20 18 26 26 C 1.47022 * 108.70109 * 335.87077 * 17 16 14 27 27 C 1.54371 * 107.28701 * 1.09214 * 26 17 16 28 28 H 1.08996 * 110.70589 * 263.79446 * 27 26 17 29 29 O 1.42903 * 110.75236 * 140.50578 * 27 26 17 30 30 H 1.09006 * 109.46909 * 85.49694 * 1 2 3 31 31 H 1.08997 * 109.46996 * 205.48929 * 1 2 3 32 32 H 1.08991 * 109.47245 * 325.49572 * 1 2 3 33 33 H 1.08001 * 119.96195 * 0.02562 * 6 5 3 34 34 H 1.08000 * 119.78049 * 179.97438 * 7 6 5 35 35 H 1.08000 * 124.20267 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.97725 * 359.97253 * 13 5 3 37 37 H 1.09003 * 110.36473 * 273.92510 * 16 14 2 38 38 H 1.08996 * 110.37186 * 36.13487 * 16 14 2 39 39 H 0.97000 * 120.00134 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.88261 * 120.47605 * 26 17 16 41 41 H 1.09002 * 109.88414 * 241.64327 * 26 17 16 42 42 H 0.96704 * 113.99968 * 66.48826 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3513 1.1693 -0.0904 5 6 1.4045 2.4436 0.1099 6 6 0.1901 2.6106 -0.5696 7 6 -0.4908 3.7864 -0.4719 8 6 0.0127 4.8327 0.3027 9 16 -0.6096 6.4478 0.6301 10 6 0.7378 6.7944 1.6180 11 7 1.5430 5.8034 1.6800 12 6 1.2218 4.6878 0.9958 13 6 1.9200 3.4724 0.8847 14 6 2.1975 -1.2687 -0.0006 15 1 3.2738 -1.0960 0.0121 16 6 1.7643 -2.1604 1.1897 17 7 2.0618 -3.5380 0.7571 18 6 2.2928 -4.6027 1.5866 19 1 2.3571 -4.4517 2.6541 20 6 2.4444 -5.8763 1.0554 21 7 2.4887 -6.0442 -0.2493 22 14 2.5854 -7.3518 2.1924 23 1 1.2468 -7.9697 2.3698 24 1 3.5152 -8.3463 1.5995 25 1 3.1064 -6.9120 3.5117 26 6 2.0702 -3.5791 -0.7126 27 6 1.7892 -2.1462 -1.2132 28 1 0.7313 -2.0186 -1.4426 29 8 2.5956 -1.8406 -2.3527 30 1 -0.3633 0.0807 -1.0246 31 1 -0.3633 -0.9276 0.4422 32 1 -0.3633 0.8468 0.5821 33 1 -0.2063 1.8061 -1.1713 34 1 -1.4260 3.9100 -0.9978 35 1 0.8908 7.7340 2.1281 36 1 2.8562 3.3382 1.4061 37 1 2.3402 -1.9099 2.0807 38 1 0.6980 -2.0437 1.3829 39 1 2.5943 -6.9342 -0.6204 40 1 3.0455 -3.9109 -1.0686 41 1 1.2934 -4.2557 -1.0690 42 1 2.3803 -2.3621 -3.1381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047582787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:43 Heat of formation + Delta-G solvation = 2.783956 kcal Electronic energy + Delta-G solvation = -27742.182236 eV Core-core repulsion = 23814.542860 eV Total energy + Delta-G solvation = -3927.639377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95756 -40.94304 -39.49984 -37.76210 -36.74769 -36.39850 -33.90036 -32.39175 -31.45032 -30.16141 -28.96814 -28.08203 -26.57319 -26.01721 -24.79996 -23.16019 -22.30262 -21.81123 -20.54389 -19.53215 -19.03717 -18.70888 -18.09531 -17.67557 -17.15375 -17.04975 -16.68725 -16.16364 -15.89446 -15.76405 -15.63600 -15.13643 -14.97673 -14.63591 -14.53463 -14.31688 -14.16058 -14.00372 -13.74172 -13.48262 -13.18087 -13.14493 -12.90707 -12.74438 -12.66844 -12.51780 -12.17415 -12.07235 -11.88723 -11.56693 -11.28874 -11.13530 -10.89624 -10.75778 -10.70709 -9.85226 -9.79367 -9.17419 -8.95876 -7.89985 -5.27156 -0.67411 -0.35337 0.22305 0.65072 1.20406 1.46055 1.47775 1.54848 1.57456 1.75941 2.46948 2.53729 2.94503 3.12409 3.31436 3.39437 3.48049 3.56683 3.81680 3.90219 4.03531 4.05463 4.12482 4.14746 4.23309 4.40057 4.47175 4.50705 4.58758 4.64636 4.74208 4.86979 4.96244 4.98869 5.02313 5.11181 5.37260 5.40883 5.41825 5.50050 5.65097 6.11956 6.25058 6.51479 6.86370 6.95845 7.03197 7.67869 8.30795 9.20063 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.002253 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.541137 B =12426.990541 C =12741.741146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.587 5.587 3 C 0.557 3.443 4 O -0.580 6.580 5 C -0.114 4.114 6 C -0.075 4.075 7 C -0.061 4.061 8 C -0.184 4.184 9 S 0.166 5.834 10 C 0.069 3.931 11 N -0.504 5.504 12 C 0.053 3.947 13 C -0.028 4.028 14 C 0.144 3.856 15 H 0.076 0.924 16 C 0.133 3.867 17 N -0.620 5.620 18 C -0.247 4.247 19 H 0.084 0.916 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.163 3.837 27 C 0.087 3.913 28 H 0.093 0.907 29 O -0.572 6.572 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.241 0.759 36 H 0.121 0.879 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.249 0.751 40 H 0.012 0.988 41 H 0.031 0.969 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 26.037 -1.795 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.317 5.317 3 C 0.346 3.654 4 O -0.461 6.461 5 C -0.120 4.120 6 C -0.096 4.096 7 C -0.084 4.084 8 C -0.303 4.303 9 S 0.420 5.580 10 C -0.235 4.235 11 N -0.218 5.218 12 C -0.067 4.067 13 C -0.050 4.050 14 C 0.039 3.961 15 H 0.094 0.906 16 C 0.007 3.993 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.102 0.898 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.808 3.192 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.195 1.195 26 C 0.037 3.963 27 C 0.026 3.974 28 H 0.111 0.889 29 O -0.379 6.379 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.191 0.809 34 H 0.195 0.805 35 H 0.257 0.743 36 H 0.140 0.860 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.323 26.959 -1.347 30.558 hybrid contribution 1.291 -2.417 0.229 2.750 sum -13.031 24.542 -1.118 27.810 Atomic orbital electron populations 1.22594 0.76725 1.05295 1.04038 1.47589 1.08612 1.03932 1.71617 1.18663 0.86583 0.84401 0.75739 1.90793 1.16048 1.87726 1.51489 1.19455 0.97505 0.92864 1.02216 1.21574 0.91566 0.98988 0.97518 1.20419 1.01284 0.89636 0.97015 1.24501 0.99468 1.01586 1.04774 1.83813 1.24481 1.03781 1.45891 1.28830 0.92916 1.01916 0.99857 1.66236 1.32806 1.00292 1.22422 1.19091 0.94736 0.93843 0.98986 1.20552 0.98269 0.89542 0.96658 1.21947 0.96893 0.82490 0.94818 0.90615 1.21899 0.99083 0.83687 0.94624 1.44498 1.83449 1.04614 1.02255 1.19445 1.42249 0.85823 0.90021 0.89812 1.25679 1.02029 1.00158 0.97578 1.70150 1.57064 1.21463 1.10921 0.85035 0.77321 0.78800 0.77998 1.20798 1.22258 1.19486 1.21626 0.98670 0.92231 0.83791 1.23316 0.94576 0.93739 0.85757 0.88904 1.86487 1.62884 1.65828 1.22719 0.89070 0.89730 0.88226 0.80855 0.80530 0.74275 0.86050 0.94231 0.92469 0.94142 0.96965 0.95100 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 7.64 127.77 0.98 1.97 16 2 N -0.59 -17.45 2.91 -818.45 -2.38 -19.83 16 3 C 0.56 18.35 7.33 86.73 0.64 18.99 16 4 O -0.58 -25.10 16.28 -3.97 -0.06 -25.16 16 5 C -0.11 -2.86 5.21 -20.21 -0.11 -2.97 16 6 C -0.07 -1.19 7.49 22.27 0.17 -1.03 16 7 C -0.06 -0.78 9.99 22.12 0.22 -0.56 16 8 C -0.18 -3.09 6.56 23.05 0.15 -2.94 16 9 S 0.17 1.68 23.17 -56.49 -1.31 0.37 16 10 C 0.07 0.87 12.09 130.82 1.58 2.45 16 11 N -0.50 -11.08 10.57 -194.90 -2.06 -13.14 16 12 C 0.05 1.24 6.99 39.73 0.28 1.51 16 13 C -0.03 -0.77 9.67 22.96 0.22 -0.55 16 14 C 0.14 5.52 3.17 46.38 0.15 5.67 16 15 H 0.08 3.56 7.02 -2.38 -0.02 3.54 16 16 C 0.13 5.45 6.78 86.86 0.59 6.04 16 17 N -0.62 -31.73 3.39 -691.89 -2.35 -34.08 16 18 C -0.25 -13.77 10.27 84.04 0.86 -12.91 16 19 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 20 C -0.06 -3.44 5.48 84.86 0.47 -2.97 16 21 N -0.95 -56.10 10.36 21.65 0.22 -55.88 16 22 Si 0.98 45.36 29.56 68.60 2.03 47.39 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.16 7.90 5.15 86.75 0.45 8.35 16 27 C 0.09 3.22 3.91 31.80 0.12 3.34 16 28 H 0.09 2.81 7.21 -2.39 -0.02 2.79 16 29 O -0.57 -20.89 13.39 -148.98 -1.99 -22.88 16 30 H 0.09 1.16 6.87 -2.38 -0.02 1.14 16 31 H 0.08 1.62 6.15 -2.39 -0.01 1.60 16 32 H 0.10 1.41 5.82 -2.39 -0.01 1.39 16 33 H 0.17 1.86 5.30 -2.91 -0.02 1.85 16 34 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.24 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.12 3.69 8.04 -2.91 -0.02 3.66 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 2.04 6.13 -2.39 -0.01 2.03 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.01 0.69 7.46 -2.39 -0.02 0.67 16 41 H 0.03 1.61 7.37 -2.39 -0.02 1.59 16 42 H 0.39 10.72 9.12 -74.05 -0.68 10.04 16 Total: -1.00 -82.70 355.58 -0.72 -83.43 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.42 Total: 15.38 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 6.76 Total: 24.40 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -6.57 Total: -122.93 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.06 Total: -48.04 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.31 Total: 0.37 kcal Total: -82.70 -0.72 -83.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047582787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.213 kcal (2) G-P(sol) polarization free energy of solvation -82.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds