Wall clock time and date at job start Wed Apr 1 2020 04:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00213 * 2 1 4 4 H 1.09006 * 110.77936 * 26.75730 * 3 2 1 5 5 C 1.54323 * 110.71996 * 263.51907 * 3 2 1 6 6 N 1.47025 * 107.27191 * 219.44189 * 5 3 2 7 7 C 1.36929 * 125.64628 * 178.90141 * 6 5 3 8 8 H 1.08002 * 120.00205 * 180.02562 * 7 6 5 9 9 C 1.38813 * 120.00342 * 0.02630 * 7 6 5 10 10 N 1.31622 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47005 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46744 * 119.99913 * 11 9 7 14 14 H 1.48497 * 109.47233 * 239.99631 * 11 9 7 15 15 C 1.47462 * 108.71972 * 358.97593 * 6 5 3 16 16 C 1.54901 * 104.81520 * 24.06942 * 15 6 5 17 17 H 1.08998 * 111.00471 * 81.13545 * 16 15 6 18 18 N 1.46502 * 111.00733 * 204.94691 * 16 15 6 19 19 C 1.34775 * 120.00207 * 270.42203 * 18 16 15 20 20 O 1.21547 * 119.99905 * 359.97438 * 19 18 16 21 21 C 1.47874 * 120.00071 * 179.97438 * 19 18 16 22 22 N 1.32464 * 119.74958 * 359.97438 * 21 19 18 23 23 C 1.31760 * 121.97985 * 179.97438 * 22 21 19 24 24 C 1.37675 * 121.49376 * 0.02562 * 23 22 21 25 25 C 1.41108 * 119.39238 * 359.97086 * 24 23 22 26 26 C 1.44982 * 130.46898 * 180.02562 * 25 24 23 27 27 C 1.32003 * 114.84792 * 179.97438 * 26 25 24 28 28 S 1.75342 * 111.45721 * 0.02562 * 27 26 25 29 29 C 1.40263 * 117.63426 * 0.02681 * 25 24 23 30 30 H 1.09000 * 109.47265 * 300.00285 * 1 2 3 31 31 H 1.09008 * 109.47077 * 60.00064 * 1 2 3 32 32 H 1.09006 * 109.47484 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.88101 * 338.86289 * 5 3 2 34 34 H 1.09005 * 109.88092 * 100.02315 * 5 3 2 35 35 H 0.97000 * 119.99962 * 180.02562 * 10 9 7 36 36 H 1.09004 * 110.35024 * 265.25214 * 15 6 5 37 37 H 1.09005 * 110.40447 * 142.92027 * 15 6 5 38 38 H 0.97006 * 119.99524 * 90.41821 * 18 16 15 39 39 H 1.08004 * 119.24957 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.30333 * 179.97438 * 24 23 22 41 41 H 1.07999 * 122.57751 * 359.96000 * 26 25 24 42 42 H 1.07999 * 124.27364 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3362 2.0289 0.4588 5 6 2.3811 1.7379 -1.4342 6 7 3.6686 2.4438 -1.3580 7 6 4.3548 2.9689 -2.4203 8 1 5.2974 3.4710 -2.2593 9 6 3.8391 2.8560 -3.7041 10 7 2.6906 2.2437 -3.9004 11 14 4.7749 3.5730 -5.1531 12 1 6.0288 4.2043 -4.6690 13 1 5.1054 2.4898 -6.1137 14 1 3.9347 4.5942 -5.8286 15 6 4.0997 2.4912 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3639 0.5396 18 7 3.2167 1.5252 2.1632 19 6 4.1767 1.1308 3.0230 20 8 5.1791 0.5845 2.6059 21 6 4.0105 1.3629 4.4740 22 7 2.9162 1.9592 4.9231 23 6 2.7225 2.1874 6.2063 24 6 3.6525 1.8163 7.1512 25 6 4.8408 1.1763 6.7394 26 6 5.9649 0.6896 7.5150 27 6 6.9283 0.1319 6.8056 28 16 6.5539 0.1460 5.0926 29 6 5.0150 0.9488 5.3663 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.4769 0.8600 -2.0730 34 1 1.6154 2.4051 -1.8299 35 1 2.3304 2.1644 -4.7976 36 1 3.7887 3.4291 0.5115 37 1 5.1810 2.3732 0.1222 38 1 2.4165 1.9609 2.4961 39 1 1.8139 2.6774 6.5239 40 1 3.4741 2.0131 8.1981 41 1 6.0106 0.7769 8.5905 42 1 7.8329 -0.2809 7.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081814492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:06 Heat of formation + Delta-G solvation = 19.190024 kcal Electronic energy + Delta-G solvation = -27636.911443 eV Core-core repulsion = 23709.983487 eV Total energy + Delta-G solvation = -3926.927956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83692 -39.37798 -38.04419 -36.29817 -35.88309 -34.08160 -32.11308 -31.43341 -30.60904 -28.78065 -27.26077 -26.08203 -25.06653 -24.60409 -23.87226 -21.80106 -20.79001 -20.49286 -19.93817 -18.55276 -17.66318 -17.06785 -16.68429 -16.37939 -15.49917 -15.34329 -15.31139 -15.01554 -14.81833 -14.46259 -14.37426 -14.21270 -13.99145 -13.82199 -13.21428 -12.94606 -12.79400 -12.43815 -12.25819 -12.12270 -11.86049 -11.56984 -11.20398 -11.06419 -10.98371 -10.80512 -10.72291 -10.29645 -10.12517 -10.09936 -9.96335 -9.83112 -9.76883 -9.44421 -9.11578 -8.76617 -8.57613 -8.05316 -6.86668 -5.71218 -3.06117 0.09874 0.51228 1.23751 1.79486 1.82919 2.75181 3.09600 3.42032 3.47656 3.50236 3.61272 3.97019 4.11918 4.16447 4.38285 4.51518 4.57339 4.85489 5.03346 5.09287 5.12367 5.19423 5.42094 5.43367 5.50878 5.61741 5.66889 5.67928 5.73975 5.86530 5.88990 5.95479 6.06462 6.13660 6.18770 6.51223 6.63802 6.84733 7.27295 7.36786 7.50342 7.69832 7.74433 7.89139 8.21027 8.27417 9.19648 9.79591 10.42817 11.40259 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.002764 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.783840 B =10127.533641 C =11157.630939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.065 0.935 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.131 3.869 16 C 0.130 3.870 17 H 0.108 0.892 18 N -0.689 5.689 19 C 0.565 3.435 20 O -0.522 6.522 21 C 0.139 3.861 22 N -0.443 5.443 23 C 0.082 3.918 24 C -0.111 4.111 25 C -0.046 4.046 26 C -0.133 4.133 27 C -0.203 4.203 28 S 0.200 5.800 29 C -0.166 4.166 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.407 0.593 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -2.852 25.488 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.083 0.917 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.025 3.975 17 H 0.126 0.874 18 N -0.339 5.339 19 C 0.348 3.652 20 O -0.398 6.398 21 C -0.012 4.012 22 N -0.156 5.156 23 C -0.073 4.073 24 C -0.133 4.133 25 C -0.062 4.062 26 C -0.163 4.163 27 C -0.338 4.338 28 S 0.465 5.535 29 C -0.286 4.286 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.243 0.757 39 H 0.185 0.815 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.617 -3.671 23.082 23.380 hybrid contribution -0.425 1.094 1.399 1.826 sum 0.192 -2.577 24.480 24.616 Atomic orbital electron populations 1.22713 0.81699 1.02049 0.99794 1.87903 1.19134 1.27509 1.95037 1.23840 0.92827 0.84173 0.99429 0.91730 1.21565 0.88232 0.97280 0.88917 1.44271 1.21366 1.66508 1.00635 1.19126 1.02305 1.29408 0.84656 0.90073 1.24821 0.97442 1.00740 0.97394 1.69951 1.19216 1.47298 1.20495 0.86004 0.78809 0.78188 0.82525 1.20429 1.21689 1.21771 1.21834 0.97813 0.93773 0.86232 1.22512 0.96813 1.01242 0.76953 0.87399 1.45747 1.21716 1.59431 1.06975 1.17713 0.83829 0.79399 0.84243 1.90797 1.28692 1.42731 1.77574 1.20692 0.89666 0.96970 0.93824 1.67591 1.19445 1.10605 1.17944 1.22490 0.99338 0.98145 0.87352 1.22107 0.92382 0.97200 1.01561 1.19510 0.95999 0.99503 0.91186 1.20755 0.92568 1.02248 1.00768 1.25811 1.03586 1.04356 1.00081 1.85206 1.09883 1.57831 1.00585 1.23697 1.01680 1.06163 0.97020 0.94750 0.93630 0.90262 0.91874 0.93269 0.93722 0.95793 0.93010 0.75677 0.81534 0.83844 0.83441 0.81077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.16 10.43 -35.23 -0.37 -7.52 16 3 C 0.06 1.10 3.08 -24.90 -0.08 1.02 16 4 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 5 C 0.17 4.07 5.15 -3.06 -0.02 4.06 16 6 N -0.60 -15.66 3.40 -170.04 -0.58 -16.24 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 11 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 C 0.13 2.87 6.93 -2.51 -0.02 2.85 16 16 C 0.13 2.53 3.09 -65.79 -0.20 2.33 16 17 H 0.11 2.35 7.63 -51.93 -0.40 1.95 16 18 N -0.69 -11.32 5.20 -52.66 -0.27 -11.60 16 19 C 0.56 9.55 7.80 -12.32 -0.10 9.46 16 20 O -0.52 -10.10 14.72 5.32 0.08 -10.02 16 21 C 0.14 2.00 6.78 -82.76 -0.56 1.44 16 22 N -0.44 -5.51 9.51 -9.78 -0.09 -5.60 16 23 C 0.08 0.74 11.12 -17.79 -0.20 0.54 16 24 C -0.11 -0.90 10.18 -38.70 -0.39 -1.29 16 25 C -0.05 -0.47 6.10 -105.38 -0.64 -1.12 16 26 C -0.13 -1.09 10.39 -38.83 -0.40 -1.49 16 27 C -0.20 -1.70 11.02 28.82 0.32 -1.38 16 28 S 0.20 2.42 21.43 -107.50 -2.30 0.12 16 29 C -0.17 -2.19 6.33 -37.93 -0.24 -2.43 16 30 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.76 7.29 -51.93 -0.38 1.38 16 34 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.41 5.88 7.86 -40.82 -0.32 5.56 16 39 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -33.80 367.49 -9.37 -43.17 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.23 Total: 2.74 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.68 Total: 8.68 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.37 Total: -60.03 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.29 Total: -17.55 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.30 Total: 0.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -9.37 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081814492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.357 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds